mRNA_P-littoralis_Contig115.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.14.1
Unique NamemRNA_P-littoralis_Contig115.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig115.14.1 vs. uniprot
Match: A0A6H5JTW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW2_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 8.590e-36
Identity = 76/124 (61.29%), Postives = 92/124 (74.19%), Query Frame = 3 
Query:  243 AFSFAGIENELLSRSATRT-TAKIPTGDSGEGGGVEEEESAWLPRFFPPPSPGDQDVEGGNGIRPLIELPLDGILLQLFPALLIAVVGTFLTIAVQFEASKFDGMVGEDGRTPVITDLRDTRTE 611
            AFS + +E+EL +R+A +  T +     SG G   +E E AWLPRFFPPP P  QD E G+ I+PLIELPLDGILLQLFPALLI V+G FLT+ +Q EA +FDGMVGEDG   V+TDLRDTRT+
Sbjct:  160 AFSVSALEDELQARAAQKAATTQRDGARSGGGTTADEGEDAWLPRFFPPPLP-TQDDEEGDAIQPLIELPLDGILLQLFPALLIGVLGLFLTVVIQVEAGRFDGMVGEDGGVVVVTDLRDTRTQ 282
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTW2_9PHAE8.590e-3661.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:46936..47995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1060
Hectar predicted targeting categoryother localisation
Exons1
Cds size618
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789468.660897-UTR-P-littoralis_Contig115:46935..473751680789468.660897-UTR-P-littoralis_Contig115:46935..47375Pylaiella littoralis U1_48UTRP-littoralis_Contig115 46936..47375 -
1680789468.691592-UTR-P-littoralis_Contig115:47993..479951680789468.691592-UTR-P-littoralis_Contig115:47993..47995Pylaiella littoralis U1_48UTRP-littoralis_Contig115 47994..47995 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789468.6750193-CDS-P-littoralis_Contig115:47375..479931680789468.6750193-CDS-P-littoralis_Contig115:47375..47993Pylaiella littoralis U1_48CDSP-littoralis_Contig115 47376..47993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.14.1prot_P-littoralis_Contig115.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 47376..47993 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.14.1

>prot_P-littoralis_Contig115.14.1 ID=prot_P-littoralis_Contig115.14.1|Name=mRNA_P-littoralis_Contig115.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=206bp
MKTPFSTTAGQPRRGATGRRGRQDSDRSMVGVICRAGGGKGGLYDDDKEK
GDAEDDAEGDEDDQSITTNTGGGGGDDSSPAFSFAGIENELLSRSATRTT
AKIPTGDSGEGGGVEEEESAWLPRFFPPPSPGDQDVEGGNGIRPLIELPL
DGILLQLFPALLIAVVGTFLTIAVQFEASKFDGMVGEDGRTPVITDLRDT
RTELP*
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mRNA from alignment at P-littoralis_Contig115:46936..47995-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.14.1 ID=mRNA_P-littoralis_Contig115.14.1|Name=mRNA_P-littoralis_Contig115.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1060bp|location=Sequence derived from alignment at P-littoralis_Contig115:46936..47995- (Pylaiella littoralis U1_48)
GAATGAAAACACCATTTTCGACAACAGCTGGACAGCCAAGACGAGGGGCA
ACAGGTCGAAGGGGTAGGCAGGACAGCGATCGATCCATGGTTGGTGTGAT
TTGTCGAGCCGGCGGCGGCAAGGGTGGCCTGTACGATGATGACAAAGAGA
AGGGCGACGCGGAGGACGACGCGGAGGGGGACGAGGACGACCAGAGCATC
ACTACCAATACCGGCGGCGGTGGTGGTGATGATTCATCGCCAGCATTTTC
CTTCGCGGGGATCGAAAACGAACTTCTGTCTCGATCAGCAACAAGAACGA
CGGCAAAAATACCAACGGGAGATAGTGGTGAAGGCGGAGGAGTGGAAGAA
GAGGAGAGCGCATGGTTGCCGAGGTTCTTCCCGCCGCCGTCGCCGGGGGA
TCAAGACGTCGAAGGTGGCAACGGCATCCGGCCCTTGATTGAGCTCCCGC
TGGACGGAATCCTGTTGCAACTGTTTCCGGCTCTTCTGATAGCGGTAGTC
GGTACCTTTCTAACAATCGCCGTGCAGTTTGAAGCAAGCAAGTTCGATGG
GATGGTCGGCGAAGATGGCAGGACCCCTGTCATAACCGATCTTCGAGACA
CACGTACGGAGCTGCCATGATTGACCGAATGATTGATAAATGAAAGCCAT
TGAGTATCATAGCGCTGATGTATGTATGTATCCCATTTGTGTTCTTACGT
ATCACATACTTCGTACGAAGTATATATGCGTCTCGCGATGCAAGAGAGGT
CATCGATGCTGCGTTGGTGTCTTGGTGTATACGGAGTATTTGTTGACCTC
TGTCAGGCTTGCGGCTCTTTGCTGTTGTTCCACACAACAACCGATGGGCT
TGAATATTTGCTTGCAGACACGACAACGGATAAATGTGTCTTATACGTGC
TTGGCATGCGGCGAGATTTCGTAGCTACGCTTTTTTTTGTTTGCAACACG
ATCCAACGTATACTGCACCCACTTGATGTTGCTCACGTTATTGCGTTCGG
AGAACAAGCGACGAAAGTTCTCGACGGCTGAACTATCGCTGCGACAAGGA
TTCCATAAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:46936..47995-

>mRNA_P-littoralis_Contig115.14.1 ID=mRNA_P-littoralis_Contig115.14.1|Name=mRNA_P-littoralis_Contig115.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=618bp|location=Sequence derived from alignment at P-littoralis_Contig115:46936..47995- (Pylaiella littoralis U1_48)
ATGAAAACACCATTTTCGACAACAGCTGGACAGCCAAGACGAGGGGCAAC
AGGTCGAAGGGGTAGGCAGGACAGCGATCGATCCATGGTTGGTGTGATTT
GTCGAGCCGGCGGCGGCAAGGGTGGCCTGTACGATGATGACAAAGAGAAG
GGCGACGCGGAGGACGACGCGGAGGGGGACGAGGACGACCAGAGCATCAC
TACCAATACCGGCGGCGGTGGTGGTGATGATTCATCGCCAGCATTTTCCT
TCGCGGGGATCGAAAACGAACTTCTGTCTCGATCAGCAACAAGAACGACG
GCAAAAATACCAACGGGAGATAGTGGTGAAGGCGGAGGAGTGGAAGAAGA
GGAGAGCGCATGGTTGCCGAGGTTCTTCCCGCCGCCGTCGCCGGGGGATC
AAGACGTCGAAGGTGGCAACGGCATCCGGCCCTTGATTGAGCTCCCGCTG
GACGGAATCCTGTTGCAACTGTTTCCGGCTCTTCTGATAGCGGTAGTCGG
TACCTTTCTAACAATCGCCGTGCAGTTTGAAGCAAGCAAGTTCGATGGGA
TGGTCGGCGAAGATGGCAGGACCCCTGTCATAACCGATCTTCGAGACACA
CGTACGGAGCTGCCATGA
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