mRNA_P-littoralis_Contig115.7.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.7.4
Unique NamemRNA_P-littoralis_Contig115.7.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig115.7.4 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 4.090e-11
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 2 
Query:    2 CSFEKVFGSVRGMLPATA-PGRNTPNWIQNLPRLDRYATALIPERLRHIWEAWFVETDGNCLWRALAKALWDCDQFWPHLK 241
            C++ KVFG+  G++P  A PG+    +       D  AT ++   LR  + A +VE DGNC WR++AKALW  D++W  LK
Sbjct:   60 CTWPKVFGTPEGVVPTVARPGKGQEMY-------DPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLK 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.7.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE4.090e-1140.74SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:33357..34480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size321
Hectar predicted targeting categoryother localisation
Exons3
Cds size255
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789468.5955338-UTR-P-littoralis_Contig115:33356..333931680789468.5955338-UTR-P-littoralis_Contig115:33356..33393Pylaiella littoralis U1_48UTRP-littoralis_Contig115 33357..33393 +
1680789468.63513-UTR-P-littoralis_Contig115:34451..344801680789468.63513-UTR-P-littoralis_Contig115:34451..34480Pylaiella littoralis U1_48UTRP-littoralis_Contig115 34452..34480 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789468.606185-CDS-P-littoralis_Contig115:33393..334291680789468.606185-CDS-P-littoralis_Contig115:33393..33429Pylaiella littoralis U1_48CDSP-littoralis_Contig115 33394..33429 +
1680789468.6144729-CDS-P-littoralis_Contig115:33944..341121680789468.6144729-CDS-P-littoralis_Contig115:33944..34112Pylaiella littoralis U1_48CDSP-littoralis_Contig115 33945..34112 +
1680789468.6232278-CDS-P-littoralis_Contig115:34400..344511680789468.6232278-CDS-P-littoralis_Contig115:34400..34451Pylaiella littoralis U1_48CDSP-littoralis_Contig115 34401..34451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.7.4prot_P-littoralis_Contig115.7.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 33394..34451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.7.4

>prot_P-littoralis_Contig115.7.4 ID=prot_P-littoralis_Contig115.7.4|Name=mRNA_P-littoralis_Contig115.7.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
MLPATAPGRNTPNWIQNLPRLDRYATALIPERLRHIWEAWFVETDGNCLW
RALAKALWDCDQFWPHLKARKKNEATGATGWRNW*
back to top

mRNA from alignment at P-littoralis_Contig115:33357..34480+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.7.4 ID=mRNA_P-littoralis_Contig115.7.4|Name=mRNA_P-littoralis_Contig115.7.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=1124bp|location=Sequence derived from alignment at P-littoralis_Contig115:33357..34480+ (Pylaiella littoralis U1_48)
CTGTTCGTTTGAGAAGGTCTTCGGCTCTGTCCGTGGGATGCTACCGGCCA
CCGCACCCGGCAGGAATACGCCGGTAAGCGAATCGTTGCAACTGTGCTAT
CGTAAACTCTGTTGGTGTATTTTTACGATTCCGCTCGTTTAAAGGCCACG
AGGCTGGATTTGGTTGGTTGATTGAGCTGGGTTGATTTGGTTGAGTTGGT
TAGAGGGTTAAATGAAATTGGGTTTGTACAGGAGTGGCGTTGCGCCAAAT
ACGAAACGGCTTGAATATGTTACGTTAGATTGAGTCAAGCGTGTAAATAT
CACGGAGCGGGCGCCCTTCCCAGCGTGGCCATCAGACATTGTGTTCGCTG
TTGCCAAGGTGCTAGTAACTTAAAATGAACCCCACCGCGTAGCGCGAATA
AGAACGGTGTCAGCGGCAACTGTTGTAATTCGTGGCTTTGTGTAGACCGC
CTACCTGTTCGATAGAATCAATTTATTGGGAATGATTATTCCATGTTCTG
GGAGGCATATTCGTACAACAGGATTTTGTCGCGAGGCAGAGCGTTTCGCT
GAACCTTTTCTGCCCCTGCCTCCGAACCCCTGCCTCAGAACTGGATCCAG
AATCTACCACGGTTGGACCGGTACGCAACGGCGCTTATCCCAGAACGGCT
GCGCCACATTTGGGAAGCGTGGTTTGTCGAAACCGACGGAAACTGCTTGT
GGCGTGCCCTCGCCAAGGCCTTGTGGGATTGCGACCAGTTTTGGCCCCAT
TTGAAGGTTGTGGTTTTAGGATGGACTGCTGTGAACGCGGGAGCCCTTGT
AGAAGATGGTGGAGTCCTTTTTCGCTGCAAGAAATTCTATTCGCAACCCG
TCGTCGAGAAGTATTCGTGCCCCGCTGACTCAAGTGGGCTTACTTGTGAT
GCGGTCGATAACGCCCTCATGATGGTCCTGGAGTCCATCCTGGAATTTTG
CCCAAATAAAAAGTGGGGCGGAGACCTTACCGCGCTCTGGACATCTGAAG
CGCTAGGCATCACGGTGAAATTGGTTGTTCCCACTGACATGCAGGCGCGG
AAGAAGAACGAGGCAACGGGGGCAACCGGGTGGAGGAACTGGTAGGAACG
GGGGCAACCGCGATATCAGTCGCA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig115:33357..34480+

>mRNA_P-littoralis_Contig115.7.4 ID=mRNA_P-littoralis_Contig115.7.4|Name=mRNA_P-littoralis_Contig115.7.4|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig115:33357..34480+ (Pylaiella littoralis U1_48)
ATGCTACCGGCCACCGCACCCGGCAGGAATACGCCGAACTGGATCCAGAA
TCTACCACGGTTGGACCGGTACGCAACGGCGCTTATCCCAGAACGGCTGC
GCCACATTTGGGAAGCGTGGTTTGTCGAAACCGACGGAAACTGCTTGTGG
CGTGCCCTCGCCAAGGCCTTGTGGGATTGCGACCAGTTTTGGCCCCATTT
GAAGGCGCGGAAGAAGAACGAGGCAACGGGGGCAACCGGGTGGAGGAACT
GGTAG
back to top