mRNA_P-littoralis_Contig115.74.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.74.1
Unique NamemRNA_P-littoralis_Contig115.74.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:194055..197954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size310
Hectar predicted targeting categoryother localisation
Exons3
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789468.081286-UTR-P-littoralis_Contig115:194054..1940591680789468.081286-UTR-P-littoralis_Contig115:194054..194059Pylaiella littoralis U1_48UTRP-littoralis_Contig115 194055..194059 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789468.092024-CDS-P-littoralis_Contig115:194059..1942061680789468.092024-CDS-P-littoralis_Contig115:194059..194206Pylaiella littoralis U1_48CDSP-littoralis_Contig115 194060..194206 +
1680789468.1048543-CDS-P-littoralis_Contig115:196917..1970431680789468.1048543-CDS-P-littoralis_Contig115:196917..197043Pylaiella littoralis U1_48CDSP-littoralis_Contig115 196918..197043 +
1680789468.1170661-CDS-P-littoralis_Contig115:197924..1979541680789468.1170661-CDS-P-littoralis_Contig115:197924..197954Pylaiella littoralis U1_48CDSP-littoralis_Contig115 197925..197954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.74.1prot_P-littoralis_Contig115.74.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 194060..197954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.74.1

>prot_P-littoralis_Contig115.74.1 ID=prot_P-littoralis_Contig115.74.1|Name=mRNA_P-littoralis_Contig115.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MSEEILDGGAIAETPESWEERQARRARKRLKNEEARRQWDALEAATRAEE
DARSQARRDEIKEVLSHHVSSEDNTRDEEYDFSLVGPKKQQSILPATGGV
H
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mRNA from alignment at P-littoralis_Contig115:194055..197954+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.74.1 ID=mRNA_P-littoralis_Contig115.74.1|Name=mRNA_P-littoralis_Contig115.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3900bp|location=Sequence derived from alignment at P-littoralis_Contig115:194055..197954+ (Pylaiella littoralis U1_48)
CGGAGATGTCGGAGGAGATATTAGATGGAGGGGCAATCGCGGAAACTCCA
GAATCCTGGGAGGAACGGCAGGCAAGGCGCGCTCGTAAGAGGCTGAAGAA
CGAGGAAGCGCGGAGGCAATGGGATGCACTGGAGGCGGCAACGAGGGCCG
AGGTATGTGAAGAGCGTTGGAATTCGTACTGGGTACGTTCGTTTTTCAGT
TCTTCTGTGTACTGCACTTGTTTCCCCATATTGTAGCACTGCTGTAGCTG
TAATACTCCAGTATGAAATATGCGAATGGCGCTGCTGGGTGTGCGCACTG
CTGTACAACAGTAGCTCCGTTGGTGTGTGTTTCTTATCGCTATAGTTTTG
AGTACAGCGGGCCCCCAAACAGACGGCGTCACTGCAGAGTGTGTGCGGTT
GTCGTCGTCATGAAGGGCAGGTAAGTCAACGGGTGCTTGTATGTCTCTTT
GTGGTCAAGAGGGAGAATGAGCGGTCCGACTTCCGTTTTTCCGGTATGTA
TGAAGACTTCGAACAAAATGAAGTACGACATAGGCAGGCGTTGAGGTTTC
TCGCCAATCAGGCCCACTTTTGATGAGAAGTGAACACAGGTATCATATCA
TGAGACACGTTCAAAACGCGGCGATTAAGATGAATCGGCCCCAACGACCA
AAAGAAGACATTCATCGAGTTTTAAATCACAGAGGTTATCAACTTCCAGT
TCAATGGATTTTGCTTAACGACCACCAGAAACGGGGTTGGAGCTCCAGAG
CTCCAAACAACTTGTAAATCAACTTTTGTGGTGGTCTGGTTGGTCTGTTG
GGAGCACCCTCTCTACGTGTGTGTTTGTGCGCGCGCGTGTGTGTGTGTAT
GCTGTGCTGGTACACACCAAAAAAGAACATACACCAAGGCATGCACCACA
TATATATGCACACACCTGGACACACAGCAGTAGCAGTGGGCGGGCACCAT
GAACTGTAGCGAGAGGGTGCGTGGTGCGTAAGGCACACATAAATGGTGCC
GACGACAATCAGTCCTGTCGCTGTGCTGCCGGTGTAAGGCGTGCACATAT
ATCATGACGACCAGACACAGCAGCAGCAGCCACAGCAGCAGCAGTAGTAA
CGGAGAGGCGGGCCCAGAAAGCTCTTTGACAAGTATACTGCTGCTGTCCT
CCTCTCTTTTTCCCTTGTCTTGTCCTCGCCCCTTGCGTCGTGGCGTGGGT
GTTATTGTGGGTTGCCAACGTGCTGAGTTTGCCAACGTGCTCAGTCCCGT
TCATTACTTGTTGATTCTCACAAAAGCAGGCAGTTTACACCGCCGTGCAA
CACACGATCGGGCGCCTACACTTTAATCAAGTGATATGGGCTGTGTTGGG
TCCAGTATAGGGCAGGGTCATGAAGAGGTTCACTAAATGAACATTCTCAA
GATATATGTTTTAGTATCAGACTTCCATTCTCTCCACGTGAAAGATGCGA
TTATTCGTATTTCTAGTGTAGCGTGAGTTTTAAATCGGAGGCCAAAGTCG
CCGAAAAATGGATGTAGCGACGATGGTTGGAAAATGTTCCTCCTACCTGT
AAATCGAGTTTCGAATGACTCTATAGATGTAAATATTATGTGATGGCCTC
CGACGAGCTTCCTCGTGTTTCGCATTCTTCATTATTCGCGACATCATCGC
TCACTGCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCGCGGTTTGTGTAC
TCGCCCGCTCTCCTCGCGGAGCTTGCCTCTCAGATGTATTCGCCGAAATA
ACAATTGTCCTCGTACTCGGTGTATACTTCTTCGAATTACCTAGTACGTC
GCCGAGATCGGGGCCGAGATCGGAAACGAGATCGAGATGGAGATCGAGAC
CGGCCATTTTTTCAGAGATCGAGAAAAGATCGAACATCGGCCTTTTTGTT
GTGCCGATCTCTAAAAACCAGATCGGCCTGATTTTGCCGGCGATCTGCAA
CACTGACGCGTGGGTTTTAAAGAAACGCGCACGGTTAACGGTTGGAAAAT
ATCTGGAAAATGTGTTGGACGGCGTGCACGCATGTGAGATATTCACCTCT
TTCTCTATTATTTCCTTCCAAACTCTAGCACAGCTCCACCCGAACATATG
GAAGCCATAAGACTAACAGCAGCAACAGAAGCAGCGGCAGCGGCAACGAC
ACACAACACGCACACGCACCGCCACAGCAGTTGAAGCAGCACCATAGCAC
ACGCACGAACGCGTTGTTTATCTCTCTCCACCCCCCAATCCCTCTCTCTC
TCGGCCCCCGCACGGCATGAACACACCACTATGGTGTGTGTGTGACTACC
CCCCTATCAATAACACACCGAACAGCGGCACCGGCAGCAGCATCACACAA
CACGCGTACACGCACACACGCAGTGGCTGCGTGCGGTGTGCGGTGTTGAC
TAGTTGCACGCTGTGTTCTCTCTCGCTTTTAAGGCTCTCTCAGGCGCTCC
CTCCGTGCGTGTTATATGTGATAGAGTTGCTGCTGCCCTGTCCATTTCTC
TTGTTCTCTCCCTCTCTTTCAGCGTATGGTATAGGGGTTTTGTGAGCACG
TGTGCGCAGCAGCTTGTCAAGCTTTCACGCCTCCCTCAACTACTGTTGAC
AGAACAAAAAAATACGGCAGCTGTAACAGAGGAGCCGCAGCAGTAGCACG
TACGTCTTGACGCTCTGGCGTCGTACAAGCGAAACTTGTGGAGACGACCC
AAACACAACGCGCTATATTGTTTTTTAATGTTTTGTTGAACGAGGATACT
CACTCACCGCTGTTACCGATAAATCTCTCATGCCTTTCCATGTTTCTCCT
TTCCCTTCTCAATCCGCGTGAACAATTCATGGATTCCCTGTATGATCTAT
CACTATTGGGCAGGAGGACGCGCGAAGCCAAGCAAGAAGGGACGAGATCA
AGGAAGTCCTCTCTCACCACGTCTCCTCCGAGGACAACACCCGAGACGAG
GAGTACGACTTCTCCCTCGTTGGCCCAAAGAAGCAACAGGTATATAGGAC
ATACGAAGTAGTGTTCTAAATGCGTGATAGTTCCCGACGCCCCTGTCATT
ATTGCTTCTTGTCGACGGATTTATTACGGCACACCAGGGCATTCAGACCC
CGGGCGGACGGTGTCAAATGAACGGCGTAATTTGAAGTCTCCAATTTGAG
GCTTATGGAATCGGTGAAGCAATTGGTACAACAATATACTGAAAACACGG
CGGAGTTTGGCTGATGTACAACTTCGGAGCAGTGACGAATGAACAACGCC
AATAAAAACATTTTTGTGCAAATAACCTCTCTGCTGTCTCCGTCGAAAGA
CTTCGTGTTTTTTTTTTTCGTAGCACTTACCCTGGGCATGCCCGGTAAAC
GGTACCGCCATCCCTCCTATGATACAGTCTGCGGGTATTGCCGTCTGTGA
ATAGTCGAGACGTTTGTGAACATGTCCACTTTACTGCGATTCTCAAGTCA
ACAGGAAAAGTCTTGCAGACCTCCCAAGCGTCACTGTTTGAGATGCATAC
GATGTCCGTTTTTTTTTTCCTTCGGCAAAATATTCATGAAAAGTGTTACA
ATTGCGTGCGGGGAGTCAACCCTGTGACGATTATTTCAATGGTACGATGC
CTGCTTTGTGCTTGACCAATGGACTGATACAAAAGGTGTGGCGTACATCA
CTCGTACTGGAAGATGACATGGAGGCAGTACGGGTGCGCCTGGCGTTTTT
ATAAAATTGTGAAGCTGAAACTCCCCACGCCCCCTCAAGAGGCGGGAAAG
ATTAGCACAAGCGACATGACTAGTCACGAACATGTCAGTGCCGTCACCCA
TCAATGACTGAAAATGATACGTGCGTCGCCTGCCGTTTCTTCCGTCTTAT
CGCCGTGCGTACACTTGAAGTCGATCCTCCCGGCCACGGGGGGCGTGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:194055..197954+

>mRNA_P-littoralis_Contig115.74.1 ID=mRNA_P-littoralis_Contig115.74.1|Name=mRNA_P-littoralis_Contig115.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig115:194055..197954+ (Pylaiella littoralis U1_48)
ATGTCGGAGGAGATATTAGATGGAGGGGCAATCGCGGAAACTCCAGAATC
CTGGGAGGAACGGCAGGCAAGGCGCGCTCGTAAGAGGCTGAAGAACGAGG
AAGCGCGGAGGCAATGGGATGCACTGGAGGCGGCAACGAGGGCCGAGGAG
GACGCGCGAAGCCAAGCAAGAAGGGACGAGATCAAGGAAGTCCTCTCTCA
CCACGTCTCCTCCGAGGACAACACCCGAGACGAGGAGTACGACTTCTCCC
TCGTTGGCCCAAAGAAGCAACAGTCGATCCTCCCGGCCACGGGGGGCGTG
CAC
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