mRNA_P-littoralis_Contig115.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.41.1
Unique NamemRNA_P-littoralis_Contig115.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig115.41.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 7.950e-13
Identity = 32/50 (64.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:   83 FRNLKPGCFNRNSWNCMNVGMSSKVLSGTMVRIIDKIQFDRVTMGESPDL 232
            FR + P CFNRNSWNCMNV  S+KVLSGT+V +I+K+Q D +TMG+  DL
Sbjct:  457 FRKVVPSCFNRNSWNCMNVSYSAKVLSGTIVCMIEKVQRDLLTMGKPLDL 506
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BLAST of mRNA_P-littoralis_Contig115.41.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.920e-7
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:   83 FRNLKPGCFNRNSWNCMNVGMSSKVLSGTMVRIIDKIQFDRVTMGESPDL 232
            F  +  G FNR ++ CMNV +S+KV+SGT+VR I +++ ++ T GESPDL
Sbjct:  864 FPGMPVGAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANQETRGESPDL 913
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BLAST of mRNA_P-littoralis_Contig115.41.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 2.920e-7
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:   83 FRNLKPGCFNRNSWNCMNVGMSSKVLSGTMVRIIDKIQFDRVTMGESPDL 232
            F  +  G FNR ++ CMNV +S+KV+SGT+VR I +++ ++ T GESPDL
Sbjct:  773 FPGMPVGAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANQETRGESPDL 822
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BLAST of mRNA_P-littoralis_Contig115.41.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.580e-6
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 2 
Query:   83 FRNLKPGCFNRNSWNCMNVGMSSKVLSGTMVRIIDKIQFDRVTMGESPDL 232
            F  +    FNR ++ CMNV +S+KV+SGT+VR I +++ +R T GE PDL
Sbjct:  671 FPGMPVSAFNRTNFTCMNVKLSAKVVSGTIVRAIREVRANRETRGEPPDL 720
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE7.950e-1364.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVF4_9PHAE2.920e-750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI2.920e-750.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE2.580e-648.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:122877..125655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size238
Hectar predicted targeting categoryother localisation
Exons3
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789467.9445388-CDS-P-littoralis_Contig115:122876..1229131680789467.9445388-CDS-P-littoralis_Contig115:122876..122913Pylaiella littoralis U1_48CDSP-littoralis_Contig115 122877..122913 +
1680789467.9616632-CDS-P-littoralis_Contig115:125141..1252581680789467.9616632-CDS-P-littoralis_Contig115:125141..125258Pylaiella littoralis U1_48CDSP-littoralis_Contig115 125142..125258 +
1680789467.9733617-CDS-P-littoralis_Contig115:125573..1256531680789467.9733617-CDS-P-littoralis_Contig115:125573..125653Pylaiella littoralis U1_48CDSP-littoralis_Contig115 125574..125653 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.41.1prot_P-littoralis_Contig115.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 122877..125653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.41.1

>prot_P-littoralis_Contig115.41.1 ID=prot_P-littoralis_Contig115.41.1|Name=mRNA_P-littoralis_Contig115.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=78bp
ETLCQGRVLFFHGCRRCFRRRRRMREGLPQLEAGVLQQEQLELHERRHVF
EGAVGDDGSYHRQDSVRPRDHGRITRPG
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mRNA from alignment at P-littoralis_Contig115:122877..125655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.41.1 ID=mRNA_P-littoralis_Contig115.41.1|Name=mRNA_P-littoralis_Contig115.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2779bp|location=Sequence derived from alignment at P-littoralis_Contig115:122877..125655+ (Pylaiella littoralis U1_48)
GAGACTCTGTGCCAGGGCAGAGTTTTGTTTTTTCACGGTGAGTCTTGTTG
TCATGACCGTCCTCAGGGCAGCACCCCGGGGTAGTTCCCTACCGAATTCA
GACTACCCTCGACGTCGCAGGCACTAGCGTCTCGCCCACCAAGGAGGTTA
GTCTCATACACCCGGTGCCGTCAGTATATGTCTCAGGCTCTCTTGGATAG
AAGTCCGTTTGGAAATCGGACTTGTGTAGGCAGACTTCTCTCCAAAATGC
GGACAAGAATCTCACCGTGTCGAGAGGACCCTGAGCGTTCGCCAGAAGCA
GGTTGAAAAACAATGCAGGAAAAATGGAAAAATTATTTTTGAAAAATCAA
CACACAGCCCATGGCGTGCAATCACCACCGCGCGGTACGCCAGAGCACGC
CTCGTGCCTGCGGGTGAACAGAAAATGCTGTGGGTTACCAGAATGCCGTC
GGCTTCAGCTTTGGTGCTGTGTTGTGTATCGGTGACGAGTCACTTTGTAG
CAGGGCATTGTTGGCTAGGTAATCTGTAATCTGTAATCTGCCATCGCTTC
TGCGCCAGAGACAAGACACCATACAGACTTGAACAGACAGATCCTTCGAG
ATTATCTCTTCCCACACAAAGCCGTTATCGTCCGTTCACACGCGGGTGTG
CTTGCCCACCACAGGTTTATAGCGTACCTTCGGGACCGCACGCTTCCCAG
TGCTGCGCACCGGTTTAAGGGAGCGCACCTTCCGAACACCGTTCTGGCTG
CTGTGAGGGCCGAAGAAGACACAACATACCAATCTAAAACACCTCAGCTG
TAGTGTGCTGTGTTGGCTGTCGAATGAGCCCTGGTTTGTCGAGTTAGGCG
GCCTGTGGCCCTCAAATGTGACGAAAGAAAAAATCGAAGTCCGGCGGCAA
ATAGGCTGCAGTTTTGTGCGGCGCAACCTCTCGCGGGTGCAGAGGCTGCA
TTTCACCCGAGTACGAGAACGCATAGCACACAGCACAGATCCGTACGAAA
GTTGGCACATGGGCTCAACATACAACTAGGGGGTAGTTTGCAAGAAGACG
CGCACCAATACGCGCTGTGGCGCACGAACGCGGCGCTTGCTTGTTAAAAA
TAACGTCCGCGCGAAGGCACCATGCTTAGCTTCCTGCAAACGATTCAGGG
AGAGTGCACCGGTTTGAACAAGAGGACATTCTGAGGGTTGCTACGCACTT
CGAATTTTGCGGGAACACCCAGTATAGGCTGAGAACGCGCAATCGGCGCG
CACCAGGTTTGAACTTAAATTTTACGTTCCGCCGACGCACACCGGCTCTC
TTCATCTTACGCGCCAAAAAGAAAAACAGATGTACTTCGTGTGTCGCTAG
ACTGATTAGGTTTTTCCGCGGGCGCGCGAATCCACGGCCCCCCGCGAATC
TGCTGGGCCCCTCCTATTTTTTCGCCGGTGCGCAGCACTGTTCCTCGCAA
GCCGTTTCACCAATGTCAGCTGACTGCGGTTCAGGCTTCCGGGCAATTTC
GAATGGGTGTAGACTAGTCTTACACGTGACAAATTCTTCGTCCTGCCTGA
ACTCTTCCTCACTGCCGCGAACATCGATTGACTTCTGCGCACACACCCTA
TCATTCGAAGATAACAATATGCGGACCATGACCATTGCTCCCATTCCCTG
TCCTCCACAGCAGTACTTCCTTAAAGAGGCAGCGTCCCACAAGAGGAAAT
GACGTAGAATACCACCCCTCTTGCGCAAATATGAATCTGCCGTGCTCGAT
GTTTCGCGCGCTAGTGGTTTCATACTTTCCACCACTATTAATAGCTGTTA
ATTTGCTTGCATTATTTGCACCCTTGTTCTGGCGAGTGTTAAAGGCTGTA
TTTCAGCTGTTGTTTTTGTCACATTGAAAACCGTTCCGTTCTCTCTATCC
AGTACCTCCAGCTGTCCGTGCTCTTCCAACACTTGCGTCGGGCGATTCCC
GTGGTCACAAGCTAACTACCCTAAGAAAAGGTATTCTAAAATTATACACA
ATAAAAACGGACCACGGAGCCGAAAGAGCAGCAAAGCAGTAGAAAGAAGC
AGCAGAAGCATATTTAAAATATAACTCAACGCATGCCGTGCTCAAGAGGC
GGGGAATGGACGGGGAGTTTGTGCATCTTAGGCCATAGGTATCTCAATGG
CAATCAGGTATAACCTCTTGTCGCGTGAACACATGTGCATGCCTATTCAT
AAAAGCCGATGAATTCCGAATAGTTCCCATTTTTTTTTCGTTCACACCGC
AACGGCTACCGACAGGCTGCCGTCGATGCTTTCGACGCCGGAGAAGGATG
AGGGAGGGCCTTCCGCAACTTGAAGCCGGGGTGCTTCAACAGGAACAGCT
GGAACTGCATGAACGTCGGCATGTCTTCGAAGGTGATCGACCGCTGTTAG
AAGCGTAATCATAGACCTCATTGTCTCGGGTGGGCGGTAAACCTTTATAT
GCGTGGAACGTGTCACGTGTATAAATCCCCTTGCCTCGTGTCATGCCGCA
TTTATATCCCACGAGGGTTACAAGCTAGCGTTACTGAGCACGGCAAACAT
GGTAATGCTAAGCGCTTGCAGTACTCTGTGTTGTGTTCGAAGGTCGTGTG
CACGAATGGCTTGTAGACGATGCCGAGAGAGGCGCATGCAGTCTCGATCC
ATCTCTCACCCGAGACCGTTCCATCATGTTGTCCGTTATTGTCCTAGGTG
CTGTCGGGGACGATGGTTCGTATCATCGACAAGATTCAGTTCGACCGCGT
GACCATGGGAGAATCACCCGACCTGGAGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:122877..125655+

>mRNA_P-littoralis_Contig115.41.1 ID=mRNA_P-littoralis_Contig115.41.1|Name=mRNA_P-littoralis_Contig115.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=234bp|location=Sequence derived from alignment at P-littoralis_Contig115:122877..125655+ (Pylaiella littoralis U1_48)
GAGACTCTGTGCCAGGGCAGAGTTTTGTTTTTTCACGGCTGCCGTCGATG
CTTTCGACGCCGGAGAAGGATGAGGGAGGGCCTTCCGCAACTTGAAGCCG
GGGTGCTTCAACAGGAACAGCTGGAACTGCATGAACGTCGGCATGTCTTC
GAAGGTGCTGTCGGGGACGATGGTTCGTATCATCGACAAGATTCAGTTCG
ACCGCGTGACCATGGGAGAATCACCCGACCTGGA
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