mRNA_P-littoralis_Contig1147.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig1147.7.1
Unique Name	mRNA_P-littoralis_Contig1147.7.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig1147.7.1 vs. uniprot
Match: A0A6H5JXN1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN1_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 2.140e-14
Identity = 46/106 (43.40%), Postives = 64/106 (60.38%), Query Frame = 2

Query:   56 HAFLDHANIKSMIETAKQMGIKLTGVR----GTATVVPKRKQSEVRRAKSRRCISQIFAAVPAYLHGPMGPYIASTGGAKYLMQLVDDHTNFGWVAFLRDKSGSTV 361
            H  L HAN K++ ETAKQMG+K+TG      G A +   ++      + SRR    +   V   L GP G    S+GGAKY+MQ++D HTN+GW+ FLR++SG+ V
Sbjct:  603 HCSLGHANSKTLYETAKQMGVKVTGTPEYCDGCAELKAIQRSVPKVISPSRRTTRPV-ERVAMNLAGPFGQ---SSGGAKYVMQILDHHTNYGWICFLREESGTNV 704

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BLAST of mRNA_P-littoralis_Contig1147.7.1 vs. uniprot
Match: A0A6H5KNS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNS9_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.750e-14
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 2

Query:   56 HAFLDHANIKSMIETAKQMGIKLTGVRGTATVVPKRK--QSEVRRAKS-RRCISQIFAAVPAYLHGPMGPYIASTGGAKYLMQLVDDHTNFGWVAFLRDKSGSTV 361
            H  L HAN K++ ETAKQMGIK+TG         + K  Q  V +  S  R  ++    V   L GP G    S+GGAKY+MQ++D HT++GW+ FLR+KSG+ V
Sbjct:   20 HCSLGHANSKTLYETAKQMGIKVTGTPEYCDGCAESKAIQRSVPKVISPSRRTTRPLERVAMDLAGPFGQ---SSGGAKYVMQILDYHTDYGWICFLREKSGTNV 121

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BLAST of mRNA_P-littoralis_Contig1147.7.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 7.700e-14
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 2

Query:   56 HAFLDHANIKSMIETAKQMGIKLTGVRGTATVVPKRK--QSEVRRAKS-RRCISQIFAAVPAYLHGPMGPYIASTGGAKYLMQLVDDHTNFGWVAFLRDKSGSTV 361
            H  L HAN K++ ETAKQMGIK+TG         + K  Q  V +  S  R  ++    V   L GP G    S+GGAKY+MQ++D HTN+GW+ FLR+KS + V
Sbjct:  820 HCSLGHANSKTLYETAKQMGIKVTGTPEYCDGCAESKAIQRSVPKVISPSRRTTRPLERVAMDLAGPFGQ---SSGGAKYVMQILDHHTNYGWICFLREKSSTNV 921

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BLAST of mRNA_P-littoralis_Contig1147.7.1 vs. uniprot
Match: A0A6H5JE07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE07_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.030e-13
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = 2

Query:   56 HAFLDHANIKSMIETAKQMGIKLTGVR----GTATVVPKRKQSEVRRAKSRRCISQIFAAVPAYLHGPMGPYIASTGGAKYLMQLVDDHTNFGWVAFLRDKSGSTV 361
            H  L HAN K++ ETAKQMGIK+TG      G A     ++      + SRR  ++    V   L GP G    S+GGAKY+MQ++D HTN+GW+ FLR+KS + V
Sbjct:  360 HCSLGHANSKTLYETAKQMGIKVTGTPLYCDGCAESKAIQRSVPKVISPSRRT-TRPLERVAMDLAGPFGQ---SSGGAKYVMQILDHHTNYGWICFLREKSSTNV 461

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BLAST of mRNA_P-littoralis_Contig1147.7.1 vs. uniprot
Match: A0A6H5JEM9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM9_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.360e-13
Identity = 48/120 (40.00%), Postives = 63/120 (52.50%), Query Frame = 2

Query:   32 RSASTSTPHAFLDHANIKSMIETAKQMGIKLTGVRGTAT----------VVPKRKQSEVRRAKSRRCISQIFAAVPAYLHGPMGPYIASTGGAKYLMQLVDDHTNFGWVAFLRDKSGSTV 361
            RS   +  H  L H N  +  ETAKQ+GI++TG RG              VPK  Q+     K+ R   ++F  +        GPY  STGGA+Y M +VDD++N GW  FL DKSGST+
Sbjct:   12 RSIDINDLHVSLGHTNDANARETAKQLGIQITGTRGYCAGCGEAKAIRRSVPKEPQT-----KAGRPFGRVFIDLT-------GPYPPSTGGARYCMMVVDDYSNVGWTLFLADKSGSTL 119

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BLAST of mRNA_P-littoralis_Contig1147.7.1 vs. uniprot
Match: A0A6H5L6D3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D3_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.830e-13
Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 2

Query:   32 RSASTSTPHAFLDHANIKSMIETAKQMGIKLTGVRGTAT-----VVPKRKQSEVRRAKSRRCISQIFAAVPAYLHGPMGPYIASTGGAKYLMQLVDDHTNFGWVAFLRDKSGSTV 361
            RS + +  H  L H N  +  ETAKQ+GI++TG RG           +R   +  +AK+ R   ++F  +        GPY  STGGA+Y M +VDD++N GW  FL DK GST+
Sbjct:   12 RSININDLHVSLGHTNDANARETAKQLGIQVTGTRGYCAGCGEAKAIRRSVPKETKAKAGRPFGRVFIDLT-------GPYPPSTGGARYCMMVVDDYSNVGWTLFLADKGGSTL 119

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BLAST of mRNA_P-littoralis_Contig1147.7.1 vs. uniprot
Match: A0A6H5LEE5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE5_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.840e-13
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 2

Query:   56 HAFLDHANIKSMIETAKQMGIKLTGVRGTATVVPKRK--QSEVRRAKS-RRCISQIFAAVPAYLHGPMGPYIASTGGAKYLMQLVDDHTNFGWVAFLRDKSGSTV 361
            H  L HAN K++ ETAKQMGIK++          + K  Q  V +  S  R  ++    V   L GP G    S+GGAKY+MQ++D HTN+GW+ FLR+KSG+ V
Sbjct:  119 HCSLGHANSKTLYETAKQMGIKVSDTSEYCDGCTESKAIQRSVPKVVSPSRRTTRPLERVAMDLAGPFGQ---SSGGAKYVMQILDHHTNYGWICFLREKSGTNV 220

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BLAST of mRNA_P-littoralis_Contig1147.7.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.920e-13
Identity = 45/115 (39.13%), Postives = 63/115 (54.78%), Query Frame = 2

Query:   32 RSASTSTPHAFLDHANIKSMIETAKQMGIKLTGVRGTAT-----VVPKRKQSEVRRAKSRRCISQIFAAVPAYLHGPMGPYIASTGGAKYLMQLVDDHTNFGWVAFLRDKSGSTV 361
            RS + +  H  L H N  +  ETAKQ+GI++TG RG           +R   +  +AK+ R   ++F  +        GPY  STGGA+Y M +VDD++N GW  FL DK GST+
Sbjct:  347 RSININDLHVSLGHTNDANARETAKQLGIQVTGTRGYCAGCGEAKAIRRSVPKETKAKAGRPFGRVFIDLT-------GPYPPSTGGARYCMMVVDDYSNVGWTLFLADKGGSTL 454

[Close]

BLAST of mRNA_P-littoralis_Contig1147.7.1 vs. uniprot
Match: A0A6H5L9C8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9C8_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.370e-13
Identity = 46/101 (45.54%), Postives = 60/101 (59.41%), Query Frame = 2

Query:   56 HAFLDHANIKSMIETAKQMGIKLTGVRGTATVVPKRK--QSEVRRAKS-RRCISQIFAAVPAYLHGPMGPYIASTGGAKYLMQLVDDHTNFGWVAFLRDKS 349
            H  L HAN K++ ETAKQMGIK+TG         + K  Q  V +  S  R  ++    V   L GP G    S+GGAKY+MQ++D HTN+GW+ FLR+KS
Sbjct:  208 HCSLGHANSKTLYETAKQMGIKVTGTPEYCDGCAESKAIQRSVPKVISPSRRTTRPLERVAMDLAGPFGQ---SSGGAKYVMQILDHHTNYGWICFLREKS 305

[Close]

BLAST of mRNA_P-littoralis_Contig1147.7.1 vs. uniprot
Match: A0A6H5KYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYB5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.620e-13
Identity = 46/105 (43.81%), Postives = 62/105 (59.05%), Query Frame = 2

Query:   56 HAFLDHANIKSMIETAKQMGIKLTGVRGTATVVPKRK--QSEVRRAKS-RRCISQIFAAVPAYLHGPMGPYIASTGGAKYLMQLVDDHTNFGWVAFLRDKSGSTV 361
            H  L HAN K++ ETAKQMGIK+TG         + K  Q  V +  S  R  ++    V   L GP G    S+GGA+Y+MQ++D HTN+GW+ FLR+KS + V
Sbjct:  859 HCSLGHANSKTLYETAKQMGIKVTGTPEYCDGCAESKAIQRSVPKVISPSRRTTRPLERVAMDLAGPFGQ---SSGGAEYVMQILDHHTNYGWICFLREKSSTNV 960

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig1147.7.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig1147.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23


Match Name	E-value	Identity	Description
A0A6H5JXN1_9PHAE	2.140e-14	43.40	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KNS9_9PHAE	3.750e-14	44.76	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JVD9_9PHAE	7.700e-14	44.76	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JE07_9PHAE	1.030e-13	44.34	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JEM9_9PHAE	1.360e-13	40.00	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L6D3_9PHAE	1.830e-13	39.13	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5LEE5_9PHAE	1.840e-13	43.81	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JCD8_9PHAE	1.920e-13	39.13	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5L9C8_9PHAE	2.370e-13	45.54	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5KYB5_9PHAE	2.620e-13	43.81	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig1147	contig	P-littoralis_Contig1147:64615..64978 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Model size	364
Hectar predicted targeting category	other localisation
Exons	1
Cds size	276

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789467.7837842-UTR-P-littoralis_Contig1147:64614..64702	1680789467.7837842-UTR-P-littoralis_Contig1147:64614..64702	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig1147 64615..64702 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789467.7938318-CDS-P-littoralis_Contig1147:64702..64978	1680789467.7938318-CDS-P-littoralis_Contig1147:64702..64978	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig1147 64703..64978 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig1147.7.1	prot_P-littoralis_Contig1147.7.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig1147 64703..64978 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig1147:64615..64978+
coding sequence from alignment at P-littoralis_Contig1147:64615..64978+

protein sequence of mRNA_P-littoralis_Contig1147.7.1

>prot_P-littoralis_Contig1147.7.1 ID=prot_P-littoralis_Contig1147.7.1|Name=mRNA_P-littoralis_Contig1147.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
MIETAKQMGIKLTGVRGTATVVPKRKQSEVRRAKSRRCISQIFAAVPAYL
HGPMGPYIASTGGAKYLMQLVDDHTNFGWVAFLRDKSGSTVD

mRNA from alignment at P-littoralis_Contig1147:64615..64978+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig1147.7.1 ID=mRNA_P-littoralis_Contig1147.7.1|Name=mRNA_P-littoralis_Contig1147.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=364bp|location=Sequence derived from alignment at P-littoralis_Contig1147:64615..64978+ (Pylaiella littoralis U1_48)
TTGTGCGCGGCAGTGATGCGGCCCGGAAAGCCGTTCAGCATCGACGTCAA
CGCCCCACGCTTTCCTCGACCACGCCAACATCAAGTCTATGATCGAGACG
GCGAAGCAAATGGGCATCAAGCTGACAGGCGTCAGGGGTACTGCGACGGT
TGTGCCGAAGCGAAAGCAATCAGAAGTGCGCCGTGCCAAAAGTCGTCGAT
GCATCTCGCAAATCTTCGCGGCCGTTCCAGCGTATCTTCATGGACCTATG
GGACCCTACATTGCTTCAACGGGTGGTGCCAAGTACCTCATGCAGCTAGT
CGACGACCACACCAACTTTGGCTGGGTTGCTTTCTTGCGCGACAAAAGTG
GCTCGACTGTCGAC

Coding sequence (CDS) from alignment at P-littoralis_Contig1147:64615..64978+

>mRNA_P-littoralis_Contig1147.7.1 ID=mRNA_P-littoralis_Contig1147.7.1|Name=mRNA_P-littoralis_Contig1147.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig1147:64615..64978+ (Pylaiella littoralis U1_48)
ATGATCGAGACGGCGAAGCAAATGGGCATCAAGCTGACAGGCGTCAGGGG
TACTGCGACGGTTGTGCCGAAGCGAAAGCAATCAGAAGTGCGCCGTGCCA
AAAGTCGTCGATGCATCTCGCAAATCTTCGCGGCCGTTCCAGCGTATCTT
CATGGACCTATGGGACCCTACATTGCTTCAACGGGTGGTGCCAAGTACCT
CATGCAGCTAGTCGACGACCACACCAACTTTGGCTGGGTTGCTTTCTTGC
GCGACAAAAGTGGCTCGACTGTCGAC