mRNA_P-littoralis_Contig1147.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1147.2.1
Unique NamemRNA_P-littoralis_Contig1147.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1147.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1147contigP-littoralis_Contig1147:7584..8543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size291
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789467.5680327-CDS-P-littoralis_Contig1147:7583..77381680789467.5680327-CDS-P-littoralis_Contig1147:7583..7738Pylaiella littoralis U1_48CDSP-littoralis_Contig1147 7584..7738 +
1680789467.5771413-CDS-P-littoralis_Contig1147:8407..85431680789467.5771413-CDS-P-littoralis_Contig1147:8407..8543Pylaiella littoralis U1_48CDSP-littoralis_Contig1147 8408..8543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1147.2.1prot_P-littoralis_Contig1147.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1147 7584..8543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1147.2.1

>prot_P-littoralis_Contig1147.2.1 ID=prot_P-littoralis_Contig1147.2.1|Name=mRNA_P-littoralis_Contig1147.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
MVQDHRDRALSTRPSPYTHPIARASTGLALGVRSSTITGPAGGEGRRPNR
QRTLCTSPSPYTHPIARASTGLALGVRSSTITGPAGGEGRRPNRQR*
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mRNA from alignment at P-littoralis_Contig1147:7584..8543+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1147.2.1 ID=mRNA_P-littoralis_Contig1147.2.1|Name=mRNA_P-littoralis_Contig1147.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=960bp|location=Sequence derived from alignment at P-littoralis_Contig1147:7584..8543+ (Pylaiella littoralis U1_48)
ATGGTACAGGACCATAGGGACAGGGCCCTCTCCACCCGCCCTTCACCGTA
CACTCATCCGATAGCTCGAGCATCTACTGGTCTCGCACTCGGTGTGCGCT
CTAGTACCATCACAGGCCCGGCTGGCGGCGAAGGAAGGAGGCCCAATCGT
CAACGGTGAGTCGAGAAAAATGAAAACATGACCAAACATGACCATAGGAG
ATCCGGGGGGTCGGACAAAACTGGCGAACATGCTCGCCACGCAGCCCTCA
CGCTCGTCTCCGAGCGCACGGGTTGCTGCGCAACAAGGTTAGGAGCATAG
AGTGTGTAAGTCTGGCTTTCTCGGACAGAAGTCCGTTTGTCAAACGGTGT
AGTGTACGCAGAGCAATATCCAAACTTCGGACCCATAACCGTCACAGTGC
CGTATCTCTCCGCTTGGGCACACTAAAATGGACTGGTTTGTCAAGCAGTT
TGTTTGCACAATCAGAACGCTGTCCTCCTGCTGCAACAGCTGAACCCCGC
AGCATAACCTCCCCAACATGTTGCACAGCACCACTTCAGTAGAAGCTGGG
GGAGTGCTGCACACCCTGTCATGTAGCATGGCCGCGTCAGACGCCTTTTT
TGTCACTTGTGTCTCAATATTGTCACGGACCCACCGCCGTGTTCGACTCA
AGATAACACACCCCCTAGACCGACAATCAAAGCACGATTATCGACAACTA
TGGTACATGACTATTAAAAGAACAACTTGGACGGTAGCTGTACGAGATCT
CCGAAAGTTCGCTCGATTGAGGGTTCTCATTATAAGAAGGCGTGCACGGC
ACATGCGGGGACACGTCAGGACAGGACCCTCTGCACCAGCCCTTCACCGT
ACACCCATCCGATAGCTCGAGCATCTACTGGTCTCGCACTCGGTGTGCGC
TCTAGTACCATCACAGGCCCGGCTGGCGGCGAAGGAAGGAGGCCCAATCG
TCAACGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1147:7584..8543+

>mRNA_P-littoralis_Contig1147.2.1 ID=mRNA_P-littoralis_Contig1147.2.1|Name=mRNA_P-littoralis_Contig1147.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig1147:7584..8543+ (Pylaiella littoralis U1_48)
ATGGTACAGGACCATAGGGACAGGGCCCTCTCCACCCGCCCTTCACCGTA
CACTCATCCGATAGCTCGAGCATCTACTGGTCTCGCACTCGGTGTGCGCT
CTAGTACCATCACAGGCCCGGCTGGCGGCGAAGGAAGGAGGCCCAATCGT
CAACGGACCCTCTGCACCAGCCCTTCACCGTACACCCATCCGATAGCTCG
AGCATCTACTGGTCTCGCACTCGGTGTGCGCTCTAGTACCATCACAGGCC
CGGCTGGCGGCGAAGGAAGGAGGCCCAATCGTCAACGGTGA
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