mRNA_P-littoralis_Contig1146.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1146.12.1
Unique NamemRNA_P-littoralis_Contig1146.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1146.12.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 1.830e-13
Identity = 49/95 (51.58%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:  433 REFAAAVCRAVGGLYCECDGEPEPLEPHSNRDKRMAAARDHPGTCGVAMAAVIAAVETEDVEETANRRQQQATLKTFRNQACFDAARALNARGRG 717
            R FA  V   VG  YC     PEPLE  S+  KR  AA DHPG CGV  A +IAAV T+DV E  N    Q T   +RNQAC++ A A+NARG G
Sbjct:  111 RAFAFEVASKVGARYCSHVSAPEPLEDMSHA-KRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWN----QTTGNKYRNQACYNGAEAVNARGAG 200
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BLAST of mRNA_P-littoralis_Contig1146.12.1 vs. uniprot
Match: A0A6H5KGD0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGD0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 4.380e-12
Identity = 50/117 (42.74%), Postives = 60/117 (51.28%), Query Frame = 1 
Query:  367 EADPGAVQAQLLFVAQHHTARTREFAAAVCRAVGGLYCECDGEPEPLEPHSNRDKRMAAARDHPGTCGVAMAAVIAAVETEDVEETANRRQQQATLKTFRNQACFDAARALNARGRG 717
            + +P  V  +LL +A     R RE   A   AVG  YC  D  P PL   S   +R AA + H G CG   A  IA ++   VEE A   +   T K  RNQAC+DA  ALNARGRG
Sbjct:   21 QGNPLKVWEELLLMAAQTPERFREALQAAAVAVGARYCNHDTPPGPLPDISKLPERQAAVQQHAGLCGKYHAEHIANIDVTRVEERAAGAE--ITTKRMRNQACYDAGTALNARGRG 135
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BLAST of mRNA_P-littoralis_Contig1146.12.1 vs. uniprot
Match: A0A6H5KUP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP8_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.560e-12
Identity = 45/95 (47.37%), Postives = 53/95 (55.79%), Query Frame = 1 
Query:  433 REFAAAVCRAVGGLYCECDGEPEPLEPHSNRDKRMAAARDHPGTCGVAMAAVIAAVETEDVEETANRRQQQATLKTFRNQACFDAARALNARGRG 717
            R FA  V   VG  YC  D  PEP+   +    + AAA +HPG CGV  A +IAAV TEDV      R        FRNQAC+D A A+NARG+G
Sbjct:   40 RAFAFEVAAKVGAEYCHHDTAPEPMPSMALAAAKKAAA-EHPGLCGVYHAHIIAAVRTEDVTS----RSGSTAANKFRNQACYDGAMAMNARGKG 129
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BLAST of mRNA_P-littoralis_Contig1146.12.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 8.910e-12
Identity = 49/117 (41.88%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:  367 EADPGAVQAQLLFVAQHHTARTREFAAAVCRAVGGLYCECDGEPEPLEPHSNRDKRMAAARDHPGTCGVAMAAVIAAVETEDVEETANRRQQQATLKTFRNQACFDAARALNARGRG 717
            + +P  V  +LL +A     R RE   A   AVG  YC  D  P PL       +R AA + H G CG   A  IA ++   VEE A   +   T K  RNQAC+DA  ALNARGRG
Sbjct:   51 QGNPLKVWEELLLIAAQTPERFREAMQAAAVAVGARYCNHDTPPGPLPDIGKLPERQAAVQQHAGLCGKYHAEHIANIDVTMVEERAAGAE--ITTKRMRNQACYDAGTALNARGRG 165
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BLAST of mRNA_P-littoralis_Contig1146.12.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.300e-9
Identity = 47/117 (40.17%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:  367 EADPGAVQAQLLFVAQHHTARTREFAAAVCRAVGGLYCECDGEPEPLEPHSNRDKRMAAARDHPGTCGVAMAAVIAAVETEDVEETANRRQQQATLKTFRNQACFDAARALNARGRG 717
            + +P  V  +LL +A       RE   A   AVG  YC  D  P PL   S   +  AAA+ H G+CG      IA ++   V+E A   +   T K  RNQAC+DA  ALNARGRG
Sbjct:  155 QGNPLNVWEELLLIAAQTPEGFREALQAAAVAVGARYCNHDTPPGPLPDISKLPEMQAAAQQHAGSCGKYHGEHIANIDVTMVKERAAGAE--ITTKRMRNQACYDAGTALNARGRG 269
[Close]
BLAST of mRNA_P-littoralis_Contig1146.12.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 8.210e-7
Identity = 32/59 (54.24%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:  541 AARDHPGTCGVAMAAVIAAVETEDVEETANRRQQQATLKTFRNQACFDAARALNARGRG 717
            AA +HPG CGV  A +IAAV TEDV      R        FRNQAC+D A A+NARG+G
Sbjct:   12 AAAEHPGLCGVYHAHIIAAVRTEDVTS----RSGSTAANKFRNQACYDGAMAMNARGKG 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1146.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JH50_9PHAE1.830e-1351.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGD0_9PHAE4.380e-1242.74Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUP8_9PHAE7.560e-1247.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJS7_9PHAE8.910e-1241.88Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3W2_9PHAE1.300e-940.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAI4_9PHAE8.210e-754.24Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1146contigP-littoralis_Contig1146:46554..48911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1138
Hectar predicted targeting categoryother localisation
Exons3
Cds size723
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789467.4924262-UTR-P-littoralis_Contig1146:46553..468661680789467.4924262-UTR-P-littoralis_Contig1146:46553..46866Pylaiella littoralis U1_48UTRP-littoralis_Contig1146 46554..46866 -
1680789467.5363975-UTR-P-littoralis_Contig1146:48809..489111680789467.5363975-UTR-P-littoralis_Contig1146:48809..48911Pylaiella littoralis U1_48UTRP-littoralis_Contig1146 48810..48911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789467.5078416-CDS-P-littoralis_Contig1146:46866..470191680789467.5078416-CDS-P-littoralis_Contig1146:46866..47019Pylaiella littoralis U1_48CDSP-littoralis_Contig1146 46867..47019 -
1680789467.5159276-CDS-P-littoralis_Contig1146:48213..486761680789467.5159276-CDS-P-littoralis_Contig1146:48213..48676Pylaiella littoralis U1_48CDSP-littoralis_Contig1146 48214..48676 -
1680789467.5261579-CDS-P-littoralis_Contig1146:48702..488091680789467.5261579-CDS-P-littoralis_Contig1146:48702..48809Pylaiella littoralis U1_48CDSP-littoralis_Contig1146 48703..48809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1146.12.1prot_P-littoralis_Contig1146.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1146 46867..48809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1146.12.1

>prot_P-littoralis_Contig1146.12.1 ID=prot_P-littoralis_Contig1146.12.1|Name=mRNA_P-littoralis_Contig1146.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=241bp
MCPQNSRFEMGTVFILKLHQAQTWVVDYINFSYLGVTCMSTAVDTHTHTP
PAPPAHQEFRVKAIYIARVPPASMGDEGYPQDIHIGDLEADPGAVQAQLL
FVAQHHTARTREFAAAVCRAVGGLYCECDGEPEPLEPHSNRDKRMAAARD
HPGTCGVAMAAVIAAVETEDVEETANRRQQQATLKTFRNQACFDAARALN
ARGRGFRSVATNVSRRPARRFGLGTRRSTTILRLASRLII*
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mRNA from alignment at P-littoralis_Contig1146:46554..48911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1146.12.1 ID=mRNA_P-littoralis_Contig1146.12.1|Name=mRNA_P-littoralis_Contig1146.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2358bp|location=Sequence derived from alignment at P-littoralis_Contig1146:46554..48911- (Pylaiella littoralis U1_48)
GTGTAGGGTGGACAGTCTTGAAAAAAAAAAAATAATGCCGGACGGCCCGC
GTCGGGAAGCTCTCTTTTCCTTGGTACGAGGGTGACTTGGCTAAAGACTG
AAATGTGTCCCCAAAACTCCCGATTTGAAATGGGGACAGTTTTCATACTG
AAGCTACATCAAGCTCAAACTTGGGTAGTTGACTACATAAATTTTTCCTA
TTTAGGAGTACAGCAAGCTGCTTTCGCATGTATGTTACATGTATGTCCAC
TGCTGTGGACACACACACACACACACCACCAGCACCACCGGCGCACCAGG
AGTTTAGGGTGAAGGCAATCTACATAGCAAGGGTTCCTCCAGCGAGCATG
GGTGATGAAGGCTACCCGCAAGACATCCACATAGGAGACCTCGAAGCTGA
CCCCGGCGCGGTGCAGGCCCAGCTTCTCTTCGTTGCGCAGCATCACACTG
CCCGCACACGAGAATTCGCTGCCGCAGTATGCCGAGCGGTAGGCGGGCTG
TATTGTGAATGCGACGGCGAGCCGGAGCCTCTAGAACCACACTCCAACCG
CGACAAGCGCATGGCCGCCGCAAGGGACCACCCTGGTACTTGTGGCGTTG
CCATGGCGGCCGTGATCGCCGCCGTTGAAACGGAAGACGTGGAGGAGACG
GCCAATCGGAGGCAACAACAAGCGACCTTGAAGACCTTCAGGAACCAGGT
GACTGGAAAGAGTGTGTCAGTGTCAGAGAGAGAGAGAGAGCGGGACGCTG
GTTGTTCGGCTCCTTGTGTCTGGTTAGCCGTGCGTGCACGACATTGGGTT
CGGGTGGTAGTGGTAGGTGTTCTTGCTACTCTTCAACTGACCCGACCAGT
GGTGTCCTTTGTGCACAGTGCGACACTGCGCGTGTGTGCAGCCGTGGGGG
CTGTTTTGTCCGGAGTGAACCCGACTCCGCAACACTGCTGAACCCTGCTC
TACAGCATGCACGGACATCGCTAGTTATTCCGTTTCTGATATATACCAGG
TATAGACCAAATCTGTACTGGGTACAGCAGTAGTCTACACTGCTGCGGCG
CACAGTACAGCAAAACAACCAGGTAACACTGCTAATACTGCTGCTGCTGT
AGTCGTTCGGGTACTCCTGTAGTATTGTAATATTCCACACACGGCAGCAG
CGTTGAGAGTGTGCTTTTTTTCAGCAAGCATAAAATTTGTGTACATATGT
GCAGCAGCAGCAGCACCACCACCACCACCACCACCAGAACATGCGTACGG
CATAGCTTGCATGCGGTATTCTACAAACGGCAAAGGCATTTTGATCCTGT
AGCTCAAAGCAAATACCTCGTACCTGGTAAACTGCTGTATGTACAACTGC
TGTACTGCGTTCCTGGAAGCGAGTATGTACTGCTGTAGGACCATCAGTAC
CAGGACCAGCATGAGCTCAGCTGAGCTTCTCAGGTTGATATAACACACAT
AGTCTACAGCAGCAAGTACGTGACAGGCAGGTTTACCTGCAAGCATCACA
GATGAATGTAGACACCGCCCCCCCCCCCCCCCCCCCTTGCGCCGCCGCAC
ATCCTCCCCGTTGTACCCCGCACATCATGGACGCAATAATGTTGACGAGG
GCGCGTGTGTAAAAACTCCTTGCCTTATGTCCTCAGTTTGCAAAACTCAT
GCAGGTAACGCATTTGTATCACTCGTTGTGGGCATAAGGTTAGGAGTGAT
ATCTGCACAACATGTTGAATGCAGGTACTTGGACCGACATATACCCACCC
AGGCCAAATTATATAAACCGAAAAGGGCGCAAACGCCAAACGAAGTACTA
AAAGGGCCACAACTATGTCGCCAACGCATAATAATACATCATGCCCCTCT
GTGTTGCCACTTGTCGAAAACTCTGCGCCGAATCCCTCACAGGCGTGCTT
CGACGCAGCCCGCGCCCTCAATGCGCGTGGTCGGGGGTTCAGGTCCGTCG
CAACAAATGTTTCGAGAAGGCCTGCCAGGCGCTTTGGCCTGGGGACGCGC
CGATCGACGACTATACTGCGGCTGGCTTCGCGGCTGATAATATAGTCTAA
TGTAGTTGCGTAGTCGGGGACAGAGGAGACCGCGGAAGGAGAATGCGACC
GGAAATCAGAGGAGGCGCCCACCCGTTTTTTTTTATATTTTGCGTCAGTC
AGCATGTAAAGAAATGTTGTACGTAAGCAAGACGGTTGCTGTTTGTAATG
TGTTTCCTTTCCAGCCGTGCCCCTCCTATATAATTTGCGGGTAGCGTAAT
TATATACGGCGGGGTGTGCACACTGTCATCCATCCCGTTTGCCCCCCCTG
TAGCAGTGTTGTACTTTTTTGTCAACCACGACCTATTGGACAGCGCGAGT
GGGCGCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1146:46554..48911-

>mRNA_P-littoralis_Contig1146.12.1 ID=mRNA_P-littoralis_Contig1146.12.1|Name=mRNA_P-littoralis_Contig1146.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=723bp|location=Sequence derived from alignment at P-littoralis_Contig1146:46554..48911- (Pylaiella littoralis U1_48)
ATGTGTCCCCAAAACTCCCGATTTGAAATGGGGACAGTTTTCATACTGAA
GCTACATCAAGCTCAAACTTGGGTAGTTGACTACATAAATTTTTCCTATT
TAGGAGTTACATGTATGTCCACTGCTGTGGACACACACACACACACACCA
CCAGCACCACCGGCGCACCAGGAGTTTAGGGTGAAGGCAATCTACATAGC
AAGGGTTCCTCCAGCGAGCATGGGTGATGAAGGCTACCCGCAAGACATCC
ACATAGGAGACCTCGAAGCTGACCCCGGCGCGGTGCAGGCCCAGCTTCTC
TTCGTTGCGCAGCATCACACTGCCCGCACACGAGAATTCGCTGCCGCAGT
ATGCCGAGCGGTAGGCGGGCTGTATTGTGAATGCGACGGCGAGCCGGAGC
CTCTAGAACCACACTCCAACCGCGACAAGCGCATGGCCGCCGCAAGGGAC
CACCCTGGTACTTGTGGCGTTGCCATGGCGGCCGTGATCGCCGCCGTTGA
AACGGAAGACGTGGAGGAGACGGCCAATCGGAGGCAACAACAAGCGACCT
TGAAGACCTTCAGGAACCAGGCGTGCTTCGACGCAGCCCGCGCCCTCAAT
GCGCGTGGTCGGGGGTTCAGGTCCGTCGCAACAAATGTTTCGAGAAGGCC
TGCCAGGCGCTTTGGCCTGGGGACGCGCCGATCGACGACTATACTGCGGC
TGGCTTCGCGGCTGATAATATAG
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