mRNA_P-littoralis_Contig1145.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1145.16.1
Unique NamemRNA_P-littoralis_Contig1145.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1145.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1145contigP-littoralis_Contig1145:42225..46076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size433
Hectar predicted targeting categorysignal anchor
Exons2
Cds size390
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789467.0755548-CDS-P-littoralis_Contig1145:42224..425531680789467.0755548-CDS-P-littoralis_Contig1145:42224..42553Pylaiella littoralis U1_48CDSP-littoralis_Contig1145 42225..42553 +
1680789467.0868433-CDS-P-littoralis_Contig1145:45974..460351680789467.0868433-CDS-P-littoralis_Contig1145:45974..46035Pylaiella littoralis U1_48CDSP-littoralis_Contig1145 45975..46035 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789467.1031008-UTR-P-littoralis_Contig1145:46035..460761680789467.1031008-UTR-P-littoralis_Contig1145:46035..46076Pylaiella littoralis U1_48UTRP-littoralis_Contig1145 46036..46076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1145.16.1prot_P-littoralis_Contig1145.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1145 42225..46035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1145.16.1

>prot_P-littoralis_Contig1145.16.1 ID=prot_P-littoralis_Contig1145.16.1|Name=mRNA_P-littoralis_Contig1145.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=130bp
YGSNHRGKRTKLQFIGLRRCHLNYYCLLQRQRQDRAAARASSFTLKNEKL
LTHVSRQLCHICLPVSFTSAGTSVAVVFLFSRSRAIGARLRRGSGRTPSS
RESALLRHTRWYFGFRCPRQPTPMPTSKW*
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mRNA from alignment at P-littoralis_Contig1145:42225..46076+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1145.16.1 ID=mRNA_P-littoralis_Contig1145.16.1|Name=mRNA_P-littoralis_Contig1145.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3852bp|location=Sequence derived from alignment at P-littoralis_Contig1145:42225..46076+ (Pylaiella littoralis U1_48)
TACGGCTCCAACCATAGGGGGAAGAGAACGAAATTACAGTTTATTGGTCT
ACGGAGATGTCATTTAAATTATTATTGTTTACTGCAAAGACAGAGGCAGG
ATCGCGCAGCAGCACGAGCCTCTAGTTTCACTCTGAAAAACGAAAAGCTT
CTCACACACGTGAGCAGACAACTCTGCCACATCTGCCTGCCGGTCAGCTT
TACTTCTGCGGGAACTAGTGTTGCTGTCGTTTTTCTTTTCAGCCGTTCAA
GGGCCATCGGCGCGAGGCTACGACGTGGGAGCGGCCGGACACCATCCAGC
CGCGAGTCAGCCCTACTGCGCCACACTCGGTACGAGCGACGCATGTAACA
TTGTTAGGACTGAAAGGAAAATCGCCTGTTGTGTGGCTGTGCGCGGATAC
GCGCTTCGTATGCGGATAGGCACGGAGTAGGTATGGCTAGGGTTAGGGCC
GAGCCTAAGGAGGCATATTATGCACATTACCATCTGGTGGGCACACAGTA
GAGCACCACGTTACACGCGCTGCCGGTGCAGCGTAGACGCACGACGCACT
ACTGCGCAATACGTGCGTACGTCAACACAAGCTGTCATCTCGTTACACAT
TTGACATGAGACCTGCCAGGAGGTAACGATACACAGCAGTGGATGTTCGC
ACATCGTATAAATGTCGACAGCCGTCGCACGCCGGTCATCTAAAAACCGG
GCGAACCCATACCAGAGATCACTGACACACGCATTGGGGCACAGCGTAGG
GACGCTGCACGCGTTCTGTCGCTAACGGGCGCGCGTGGCCATGGGTCTAA
TATATCGTCTCACATTTGTCAAGGGACATGTCATAGGGTACCACGATGCG
ATCATATGAGAGTTGAGACTGTCGCACGCCACAGAGCGAGTTACCTTCAT
ACCAACCCAGGTCGCCATTCGATAGACGCAAACCCGTAATGATAGACGCA
CACCCATAATGAGGCTGCCGGCGCAGCACAGGTGCAGATAGCCATAACGT
AGTCCACTATCGCGCATTTCGCACTTGGTACGTACGAGGTACCGAATGCA
GGTTCCGTAATGAGGTCACCAGGACATGGTCGGACGAAACAAAAACAAAA
ATGCGGGTCACCAAAAATCCAACTTTGATCCGTGGTACAGAGACCGCCGC
CCACACAATGGCGGAGAACCGAAGTTGTAGGCGTCATTCGACGCAGGGCC
AACGATACTGTTACCATGAGCCACCACTGCTGTCCGATTGTTGCGCGATC
CACGATATCATGTCGTGAGATCGCACACACAACGGTCAGAGAGGGCACAT
AGCAGCAGTAGTAGTCACATATATCGTTGCACATACACGACGACTCGACA
GTCAACGCCGTGAGGTCAACTACATTAACAATATACCAAAGTATATAATG
CTTCGACTACAGGGTGTGAACCGGAGTTGCAGGCGTCATTCGACGCAGGG
TAAACTATGCTACTACCATGCGCCACCGCTGCTGTCCGATTGTTGCGCGA
TCCACAACGTCCATGTAGTGAGTTCACGCACACAACGGGCAGGGAGGGCA
CGCAGTAGCGGTAATAGTCGCTTATATCGCTGCACATTACACGACGATTT
GCCAGTCAATGCCGTGAGGTCAACTACATCTATTATCAATATACCGAAGT
ATGTGATACTCCAACTCGTGGGTGTAGTCGACGTAGTTGACCACACCGGA
GAGAAAAATCCAGCAGTCTGAATCGAATAATAATACAAGGAGACGAGAGA
AACAAACCCGGAGGTTTCGAGTTTAACACATGTATTAGAGGGTGTAGTCG
ACGTAGTCGACCACACAGGATAAATTCAGCACAGCTGAAGTCATGATATA
CCAAAATATATGATACTCCGACTCGAGGGTGTAGCCGACGTCGTCGACTA
CACGGGAGAGGGGAAAAACAAAATTCAGCGGGTCTGAACCGAAAAGATAA
TACAACGAGACGAGGGACACCAACCCGGGGTTCGAGTTCAACGCATGTAT
TATAGGATGTAGTCGACGCAGTCGACTATAGGGTGTAGTCGACGTAGTCG
ACCACACAGGGTAAAGTCAGCGAAGCTGAAATAAAAAATATACCAAAGTA
TATGATACTCCGACTCGAGGGTGTAGCCGACGTAGTCGACCACACGGGAG
AGGGGAAACACTAAAATTCAGCGGGCTGAACCGAAAGATAATACAGAGAG
ACGAGAGAAACAAACCCGGGGTTTCGAGTACAACGCATGTATTATAGGGT
GTAGTCGACTCAGTCGACCACAAGGGGAAATTCAGCAAGGCTGAAACGGA
AGATAATACAAAGAGAAAAACGAACCCGGCGGTTCTCGCATACAACACAC
GTATTATCCCGCCCGCATCACACACTGGTGATATCAGGCGATGGCACTTC
CAACGTAGTGTCAAAAAGGGCGAGTTCCTCGCAGGTGCGAGAAGCAGGTT
TTGCCCACATCCTCGCGTCCCGTAGTTTTGCCACGGTAACCGCGAGAGTA
ACATAACGCGTGCGATATACAGCGAAGCTCGTACAAATCCGCATGTCTGC
GCATTACGGAAAACCCCGCGTCGTTGTCGCGGTGCACTCCGCACAATTAC
GATATCAAGAGGCCGGCGCCTCGACCGACGTAGTGCCACCAATGTCGTTT
TGTTTTGTTTTTCGTTGTCGCGGTGCACTCCGCACAATTACGATGTCAAG
AGGCCGGCGCCTCGACCGAAGTGGTGCCACCAATGTCGTTTTGTTTTGTT
TTTCGCAAGGGTGGAAAATCGGTATGGCCCATAAAATTCGCGTAACACCA
TCTGCTGTCGCTGTCATACGTACCCATGACCATTGGCCGGCGCCAAAAAC
CTCAATAGTACCAGCAGGGCCGCGGTTCTCACAAGTATGGAAAATAGGTT
CGGCACGTAGTTCTGCGTACCACGAGAACGAAGACAAACATACATATGGC
ACCGAAATTAGGGTCTGTTAAAGCAGGAACAGCACCGTTTACTCGAAGTT
CCCACCGGCGTGGCGGTAGAATAAACAGGATTTTCGATTCGGCATGGAAT
AACCGGCCCCGCGGCGTGGAGACACGCGCACGGGATAAGTAAGTGGTCAG
GTGCAGCTATGGTCCCATTCTTATCTCACGATTGCGAACCCACCTGTCTG
GTTTTAATTTGGCGATGAATTTGTATTTTCCCAAGAGGtTTTTTTCTTTT
CGGAGCCAACATTACTATCAGAGAGAGGAGTCGCAACCATGAGCTTTGAA
CACTGCAGCAGGCACGTATAAACGGAATCGTACGGCGCACACCTATCGCA
CATACGTCACGCCGTAGGCACTGCTGGAGCAGATACGGTGCGATACCAAG
GTCGCACCCAGCCTGTATACAGCAGTTGCACAAAAACCGCATGTTAGTAC
GGGCGAAGTGCCCAGGATGATCCAGGGTAGGTAGCGGGGCATGCGCACTT
ATCCTCAATTCCATGCGAAATATGCCGGCGCATGCTGATCGGGCTACGGG
GGTAAATAAAAGCACCGGCGGGGCGTGCGTGATCGGTATCACTCACGAAG
AAATATAGTGACGGGGTGTGGGTGCAACATATGCCACCCACGGTTAAAGG
CGTCGAACGTGCCGGAGCACGAGGTTGTCACGCGTTAACCAGGCCCGCTG
CTATGTTCCACCTCCAATCATTGCTGACCCCGCCCCTCCGCGGTACCCTG
CCCCCCCACCCCTTTGGACACGATCATCGGATTCATCGAATAAATTCCAG
GTGGTATTTCGGTTTCCGATGTCCTCGCCAGCCGACTCCGATGCCGACGT
CCAAGTGGTGACGAGAGCTGAGTTCGAGCTGCAGGTGCAAGCCGGAGAAA
AC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1145:42225..46076+

>mRNA_P-littoralis_Contig1145.16.1 ID=mRNA_P-littoralis_Contig1145.16.1|Name=mRNA_P-littoralis_Contig1145.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=390bp|location=Sequence derived from alignment at P-littoralis_Contig1145:42225..46076+ (Pylaiella littoralis U1_48)
TACGGCTCCAACCATAGGGGGAAGAGAACGAAATTACAGTTTATTGGTCT
ACGGAGATGTCATTTAAATTATTATTGTTTACTGCAAAGACAGAGGCAGG
ATCGCGCAGCAGCACGAGCCTCTAGTTTCACTCTGAAAAACGAAAAGCTT
CTCACACACGTGAGCAGACAACTCTGCCACATCTGCCTGCCGGTCAGCTT
TACTTCTGCGGGAACTAGTGTTGCTGTCGTTTTTCTTTTCAGCCGTTCAA
GGGCCATCGGCGCGAGGCTACGACGTGGGAGCGGCCGGACACCATCCAGC
CGCGAGTCAGCCCTACTGCGCCACACTCGGTGGTATTTCGGTTTCCGATG
TCCTCGCCAGCCGACTCCGATGCCGACGTCCAAGTGGTGA
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