mRNA_P-littoralis_Contig10.111.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig10.111.1
Unique NamemRNA_P-littoralis_Contig10.111.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig10.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig10contigP-littoralis_Contig10:456595..457575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size981
Hectar predicted targeting categoryother localisation
Exons1
Cds size549
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789325.9388855-UTR-P-littoralis_Contig10:456594..4570261680789325.9388855-UTR-P-littoralis_Contig10:456594..457026Pylaiella littoralis U1_48UTRP-littoralis_Contig10 456595..457026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789325.9511716-CDS-P-littoralis_Contig10:457026..4575751680789325.9511716-CDS-P-littoralis_Contig10:457026..457575Pylaiella littoralis U1_48CDSP-littoralis_Contig10 457027..457575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig10.111.1prot_P-littoralis_Contig10.111.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig10 457027..457575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig10.111.1

>prot_P-littoralis_Contig10.111.1 ID=prot_P-littoralis_Contig10.111.1|Name=mRNA_P-littoralis_Contig10.111.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=183bp
MYTYDMILFFCRVFQVFVFFYRSDCCGAQAYLLDFRRLCWFGCGLLAACS
YNAWYCKHLCILSVCIFSLLVKGRVCVGYVEAQIKLCASSIDILRVYIAD
EISSSGSSRRRTRHRSCGILCRGPHRVRYTHNDRSLILLARGYFPTDKEE
ERCTTADGVHIHLSFFFFLRSCLKGTREQGKAK
back to top

mRNA from alignment at P-littoralis_Contig10:456595..457575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig10.111.1 ID=mRNA_P-littoralis_Contig10.111.1|Name=mRNA_P-littoralis_Contig10.111.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=981bp|location=Sequence derived from alignment at P-littoralis_Contig10:456595..457575+ (Pylaiella littoralis U1_48)
CTCATTACCGTGTGTCGCGCCGATCGCGATGAAATCAAAAGCTCCTTTTT
TTTTTCCATGCTAGCTGACGTGTGTGCGCCCCGAAAAAAGACTGAGGCTT
GGTTTTGTTTAAAAAAGGGGGCGAGGGGAAGGAGGTCACGACGGCCTGGG
GCGTGTGGCCAATTTCGAAAGTACCAGCATTCCTGTTATTGCGTAAGCAG
AACATGGATCCATAACGATGTGTACGTGAAACCTGTGTGATGTACGATAC
AGCCAGTAGTACTGTATCCAGCTGGTTGGGTGTTTTCAGCATTCGGAATT
TTTGTGAGGTGCAGAGGGGCATATCATATGCGTGATTTGATGTACGCTCT
CGTTGAGTTCTTGCCGGAGTAAATTTTCGATTCTTACGACCGGATTTGTG
ACGCGCAGGGCACACGCTTTGATATCATATTTATGTATACGTATGATATG
ATACTGTTCTTTTGTAGAGTTTTTCAAGTTTTCGTTTTTTTCTACCGTTC
GGATTGCTGTGGGGCGCAGGCATACTTGCTTGATTTTAGACGCCTTTGTT
GGTTTGGCTGCGGCTTGTTGGCGGCGTGCTCTTATAATGCCTGGTATTGC
AAACACCTCTGTATTTTGTCGGTTTGCATATTTTCTCTATTAGTCAAGGG
ACGGGTTTGTGTGGGGTACGTGGAGGCGCAAATAAAGTTGTGTGCTTCAT
CGATAGATATTCTTCGTGTTTACATTGCCGACGAGATCAGCAGCAGCGGT
AGCAGCAGGAGGAGGACGAGACACAGATCTTGCGGAATTTTATGTCGGGG
CCCTCATCGCGTACGATACACGCACAACGATCGCTCGCTTATCCTACTCG
CAAGGGGGTACTTTCCTACTGACAAAGAAGAAGAAAGGTGCACGACGGCG
GATGGTGTTCACATCCACCTGTCTTTTTTTTTTTTTTTGCGTAGTTGCCT
GAAAGGAACAAGAGAGCAGGGGAAAGCGAAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig10:456595..457575+

>mRNA_P-littoralis_Contig10.111.1 ID=mRNA_P-littoralis_Contig10.111.1|Name=mRNA_P-littoralis_Contig10.111.1|organism=Pylaiella littoralis U1_48|type=CDS|length=549bp|location=Sequence derived from alignment at P-littoralis_Contig10:456595..457575+ (Pylaiella littoralis U1_48)
ATGTATACGTATGATATGATACTGTTCTTTTGTAGAGTTTTTCAAGTTTT
CGTTTTTTTCTACCGTTCGGATTGCTGTGGGGCGCAGGCATACTTGCTTG
ATTTTAGACGCCTTTGTTGGTTTGGCTGCGGCTTGTTGGCGGCGTGCTCT
TATAATGCCTGGTATTGCAAACACCTCTGTATTTTGTCGGTTTGCATATT
TTCTCTATTAGTCAAGGGACGGGTTTGTGTGGGGTACGTGGAGGCGCAAA
TAAAGTTGTGTGCTTCATCGATAGATATTCTTCGTGTTTACATTGCCGAC
GAGATCAGCAGCAGCGGTAGCAGCAGGAGGAGGACGAGACACAGATCTTG
CGGAATTTTATGTCGGGGCCCTCATCGCGTACGATACACGCACAACGATC
GCTCGCTTATCCTACTCGCAAGGGGGTACTTTCCTACTGACAAAGAAGAA
GAAAGGTGCACGACGGCGGATGGTGTTCACATCCACCTGTCTTTTTTTTT
TTTTTTGCGTAGTTGCCTGAAAGGAACAAGAGAGCAGGGGAAAGCGAAG
back to top