mRNA_P-littoralis_Contig1141.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1141.20.1
Unique NamemRNA_P-littoralis_Contig1141.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 2.290e-63
Identity = 126/292 (43.15%), Postives = 157/292 (53.77%), Query Frame = 1
Query:    4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNK---------------GD--FVPIPYSKFA-------------------PGKKKETLWQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
            +LN  W+      QW+ +DEQMV  V   A +++R+ PKKPI +G+KL+A+    GYCF S  DGG  GDPKLR W DCPLGRT R VL VL GAC    +++  SG Y+AMD  F SP LF CL  H +FAVGT +    G   AV Y  +  + P ++G+M FAR G + F QW DSK + L S+IH+ +               GD  F P+PY  F                     GK  E L QP  R  Y   MGGVD ADQ NG +   HK+Y   WRRV E K
Sbjct:  785 ILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSPKKPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGAYIAMDNYFKSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDSDGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLE-LQQPWMRKDYVANMGGVDTADQQNGSHTHDHKSYTNHWRRVMEGK 1073          
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 4.530e-63
Identity = 110/258 (42.64%), Postives = 143/258 (55.43%), Query Frame = 1
Query:    4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNKGDFVPIPYSKFAPGKKKETLW--QPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
            + N+ WS     G W+S+DEQMV    R    ++RY   KPIKNG+K WA+ C SGYCF    DGGF GD KLR +A CPLGR+ R V++VL  AC   + +++  G  VAMD  F+   L  CL    +FAVGTL+    G   A   W        ++G M  AR   L   +W DS+ V L+ST HV   ++ P+ Y K A     E +   QPL R  Y   MGGVD+ADQ  G +   H+   +FWRRVF+QK
Sbjct:   46 VFNKCWSELVEPGAWLSYDEQMVKSTARVMFALMRYNKAKPIKNGIKCWAICCPSGYCFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFFTGAPLLRCLATRDIFAVGTLRGNRIGVELANYLWAKEGMAATERGQMLTARSDELVIVKWIDSQEVYLMSTKHVFADEWEPLAYEKRAANNNGEKVSSRQPLARKEYVKNMGGVDVADQRLGSHAHKHRPMTFFWRRVFDQK 303          
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KG44_9PHAE (DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG44_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 9.670e-61
Identity = 105/250 (42.00%), Postives = 138/250 (55.20%), Query Frame = 1
Query:    4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNKGDFVPIPYSKFAPGKKKETL--WQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYF 747
            +LNE WS     G W+S+DEQMV    R    ++R+   KPIK G+K WA+ C SGYCF    DGGF GD KLR  A CPLGR+ R VL+VL  ACP  +++++ SG  VAMD  F+   L  CL    +FAVGTL+    G   A   W        ++GDM  AR   L   +W DS+ V L+ST HV + ++ P+ Y + A     E +   QPL R  Y   MGGVD+ADQ    +   H+   +F
Sbjct:    8 LLNECWSKLVEPGAWLSYDEQMVKSTARAMFALMRFNKTKPIKTGIKGWAICCPSGYCFVQSIDGGFSGDIKLRPHATCPLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDNFFTGASLVRCLATRDIFAVGTLRGNRTGVDLAKHLWDKEGLKATERGDMLTARSDELVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGEKVSSQQPLARKEYVKNMGGVDVADQRLSAHAHTHRPMTFF 257          
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KMF5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMF5_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 2.070e-60
Identity = 115/267 (43.07%), Postives = 154/267 (57.68%), Query Frame = 1
Query:    4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNK-----GD---FVPIPYS---KFAPGKKKETLWQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
            +LN  WS    +GQW+ +DEQMV      +K +  + P KPI +G+KL+AV   +GYC  +  DG F GDP LR   DCPLG+T R VL VL   C  L  +L+ SG ++AMD  F+SP LF CL  H +FAVGT +        A+ Y  + ++T    GDM F R G + F QW+DSK + L ST+H+ +     GD   F P+P +   K   GK KE   QP+ R+ Y  +MGGVD ADQ N  +   H++Y   WRRVF+ K
Sbjct:   91 ILNCAWSENVDLGQWLCYDEQMVKTASTFSKGLAHFNPAKPITHGMKLYAVCDRNGYCLINSIDGSFKGDPSLRSLEDCPLGKTTRHVLHVLLEECETLRGKLVGSGVFIAMDNYFTSPTLFACLASHEIFAVGTCRSPR--TCGALPYIQSLERTTPNPGDMTFCRSGEMAFVQWRDSKEILLCSTVHIGETGEEGGDINHFKPVPLALKGKGWAGKHKEHD-QPVMRMDYVKYMGGVDRADQQNESHYHDHRSYTNHWRRVFDAK 354          
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 6.410e-57
Identity = 117/292 (40.07%), Postives = 155/292 (53.08%), Query Frame = 1
Query:    4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNK---------------GD--FVPIPYSKFA-------------------PGKKKETLWQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
            +LN  W+      +W+ +DEQM+  V   A +++R  PK+PI +G+KL+A+    GYCF S  DGG  GDPKLR W DCPLGRT R VL VL GAC    +++  SG ++AM   F+SP LF CL  H +FAVGT +    G   AV Y  +  + P ++G+M FAR G + F QW DSK + L S+IH+ +               GD  F P+PY  F                     GK  E L QP  R  Y   MGGV+ AD+ NG +   H++Y   WR V E K
Sbjct:  731 ILNNAWTENMDFNEWLCYDEQMMRTVSTFAHYLMRDNPKEPITHGMKLFAICDIEGYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVHIAMSNNFTSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDDDGGDDHFAPLPYRCFVCIPPSRPHPFMFSLRKAGQAGKSLE-LQQPWMRKDYVANMGGVNTADRQNGSHTHDHESYTNHWRGVMEGK 1019          
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KCK7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK7_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.070e-48
Identity = 104/247 (42.11%), Postives = 128/247 (51.82%), Query Frame = 1
Query:  139 LKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNK---------------GD--FVPIPYSKFA-------------------PGKKKETLWQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
            +KL+A+     YCF S  DGG  GDPKLR W DCPLGRT R VL VL GAC    +++  SG Y+AMD  F+SP LF CL  H +FAVGT +    G   AV Y  +  + P ++G+M FAR G + F QW DSK + L S+IH+ +               GD  F P+PY  F                     GK  E L QP  R  Y   MGGV+ ADQ N  +   HK+Y   WRRV E K
Sbjct:    1 MKLFAICDIERYCFVSSVDGGMNGDPKLRVWFDCPLGRTTRHVLHVLLGACKKFGDKIDGSGVYIAMDNYFTSPTLFECLASHDIFAVGTCRSNRTGG--AVPYLQSLDRRPVERGEMHFARAGNVAFVQWLDSKEIILCSSIHIAQPHAAIGEPKKEDSDGGDDHFAPLPYRCFVCPLPSRPHPFMFSLRKAGQAGKSLE-LQQPWMRKDYVANMGGVETADQQNVSHTHDHKSYTNHWRRVIEGK 244          
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KPD8_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD8_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 2.380e-48
Identity = 83/200 (41.50%), Postives = 112/200 (56.00%), Query Frame = 1
Query:    4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNKGDFVPIPY 603
            +LN+ WS     G W+S+DEQMV    R    ++RY   KPIK+G+K WA+ C SGY F    DGGF GD KLR +A CPLGR+ R V++VL  AC   + +++  G  VAMD  F+   L  CL    +FAVGTL+    G   A+  W        ++G M  AR   L   +W DS+ V L+ST HV   ++ P+ Y
Sbjct:  112 VLNKCWSELVEPGAWLSYDEQMVKSTARVMLALMRYNKAKPIKHGIKCWAICCPSGYSFVQSIDGGFSGDIKLRPYASCPLGRSARTVMYVLLEACETFSNKIIGKGITVAMDNFFTGAPLLGCLATRDIFAVGTLRGNRIGVELAIYLWAKEGMAATERGQMLTARSDELVIVKWIDSQEVYLMSTKHVFADEWEPLAY 311          
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KGW0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGW0_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 5.260e-47
Identity = 88/225 (39.11%), Postives = 122/225 (54.22%), Query Frame = 1
Query:  103 LRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNKGDFVPIPYSKFAPGKKKETL--WQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
            +R+   KPIK G+K WA+ C SGYCF    DGGF  D K+R  A C LGR+ R VL+VL  ACP  +++++ SG  VAMD  F+   +  CL    +FAVGT +    G       W        ++GDM  AR   L   +W DS+ V L+ST HV + ++ P+ Y + A     + +   QPL R  Y   +GGVD+ADQ    +   H+   +FW RV +QK
Sbjct:    1 MRFNKAKPIKTGIKGWAICCPSGYCFVQSIDGGF-SDIKVRPHATCRLGRSARTVLYVLLEACPTFSDKIVGSGITVAMDNFFTGASVLRCLATRDIFAVGTRRGNRTGVDLVKHLWDKEGLKATERGDMLTARSDELVIVKWIDSQEVYLMSTKHVFEDEWAPLAYERRAANNNGDKVPSHQPLARKEYVKNIGGVDVADQRLSAHAHTHRPMTFFWGRVLDQK 224          
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5LEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEE0_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 3.640e-46
Identity = 101/224 (45.09%), Postives = 126/224 (56.25%), Query Frame = 1
Query:  139 LKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVN---KGD--------FVPIPYSKFAPGKKKETL--WQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWRRVFEQK 771
            +KL A    + YC  S  DGG  GDPKLR + DCPLGRT R VL VL G C  L +++  SG ++AMD  F+SP LF CL  H +FAVGT +      + A  Y  +  +T   +GDM F R G +   QW DSK + L+STIHV    KG         F P+P S  A G+  E L   QP  R+ Y   M GVDLADQ NG +   HK+Y  FWRRV++ K
Sbjct:  428 MKLLAACDITSYCLTSSVDGGMKGDPKLRPYMDCPLGRTTRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTLFECLASHDIFAVGTCRADRTAGADA--YLESLGRTIPNRGDMNFCRSGQVACVQWADSKDIFLISTIHVAQPAKGKEEAGGIDHFKPLPLSLRAKGRNGEPLDLQQPYMRMDYVLNMLGVDLADQQNGSHTHDHKSYTNFWRRVYDAK 649          
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Match: A0A6H5KJJ0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ0_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 4.060e-43
Identity = 81/189 (42.86%), Postives = 110/189 (58.20%), Query Frame = 1
Query:    4 MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWAVACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLAEQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYWTTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIH 570
            +LN  W+       W+S+DEQM+  V + +  +  Y P KPIK+G+KL A    +GYC  S  DGG  GDPKLR + DCPLGR  R VL VL G C  L +++  SG ++AMD  F+SP +F CL  + +FAVGT +      + A  Y  +  +T   +GDM   R G +   QW DSK + L+STIH
Sbjct:  114 ILNTAWAANVECDNWLSYDEQMIKTVSKYSSKVSFYCPAKPIKHGMKLLAACDITGYCLTSSVDGGMKGDPKLRPYMDCPLGRATRHVLHVLLGECGVLRQKIDGSGVFIAMDNYFTSPTVFECLASYDIFAVGTCRADRTAGADA--YLESLGRTIPNRGDMNLCRSGQVACVQWADSKGIFLISTIH 300          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1141.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW40_9PHAE2.290e-6343.15HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5KQZ5_9PHAE4.530e-6342.64DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KG44_9PHAE9.670e-6142.00DDE_Tnp_1_7 domain-containing protein n=2 Tax=Ecto... [more]
A0A6H5KMF5_9PHAE2.070e-6043.07DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JJP9_9PHAE6.410e-5740.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCK7_9PHAE1.070e-4842.11DDE_Tnp_1_7 domain-containing protein n=3 Tax=Ecto... [more]
A0A6H5KPD8_9PHAE2.380e-4841.50DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KGW0_9PHAE5.260e-4739.11DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5LEE0_9PHAE3.640e-4645.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJJ0_9PHAE4.060e-4342.86DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1141contigP-littoralis_Contig1141:62430..64517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7955.ENSDARP00000100981
PFAMsDDE_Tnp_1_7
Model size771
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.67e-19
EggNOG OGs28PUT@1|root,2QWHD@2759|Eukaryota,38EA4@33154|Opisthokonta,3BMU4@33208|Metazoa,3DC4I@33213|Bilateria,48HGK@7711|Chordata,49FCW@7742|Vertebrata,4A65X@7898|Actinopterygii
DescriptionPiggyBac transposable
Cds size768
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789466.4820933-UTR-P-littoralis_Contig1141:62429..624321680789466.4820933-UTR-P-littoralis_Contig1141:62429..62432Pylaiella littoralis U1_48UTRP-littoralis_Contig1141 62430..62432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789466.4917397-CDS-P-littoralis_Contig1141:62432..625651680789466.4917397-CDS-P-littoralis_Contig1141:62432..62565Pylaiella littoralis U1_48CDSP-littoralis_Contig1141 62433..62565 +
1680789466.505951-CDS-P-littoralis_Contig1141:63065..635341680789466.505951-CDS-P-littoralis_Contig1141:63065..63534Pylaiella littoralis U1_48CDSP-littoralis_Contig1141 63066..63534 +
1680789466.516342-CDS-P-littoralis_Contig1141:64351..645171680789466.516342-CDS-P-littoralis_Contig1141:64351..64517Pylaiella littoralis U1_48CDSP-littoralis_Contig1141 64352..64517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1141.20.1prot_P-littoralis_Contig1141.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1141 62433..64517 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1141.20.1

>prot_P-littoralis_Contig1141.20.1 ID=prot_P-littoralis_Contig1141.20.1|Name=mRNA_P-littoralis_Contig1141.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=256bp
MLNETWSGACLVGQWISFDEQMVLCVGRTAKFMLRYMPKKPIKNGLKLWA
VACFSGYCFASYTDGGFVGDPKLRKWADCPLGRTCRMVLFVLFGACPNLA
EQLLQSGTYVAMDKLFSSPVLFNCLLWHGLFAVGTLKDIHRGASQAVRYW
TTTKQTPRQKGDMAFARFGFLTFTQWKDSKLVRLLSTIHVNKGDFVPIPY
SKFAPGKKKETLWQPLCRLAYNTFMGGVDLADQLNGYYLTLHKAYNYFWR
RVFEQK
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mRNA from alignment at P-littoralis_Contig1141:62430..64517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1141.20.1 ID=mRNA_P-littoralis_Contig1141.20.1|Name=mRNA_P-littoralis_Contig1141.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2088bp|location=Sequence derived from alignment at P-littoralis_Contig1141:62430..64517+ (Pylaiella littoralis U1_48)
ACGATGCTGAACGAGACGTGGAGCGGGGCGTGTCTTGTGGGGCAGTGGAT ATCTTTCGACGAGCAGATGGTGTTGTGCGTGGGCCGGACCGCGAAGTTCA TGCTGCGGTATATGCCAAAAAAGCCCATCAAGAACGGTGGGTGATTATCT TTCGGGTCGTGTTTCAGGTTTCATTTGTTTTTTGTGGGAATTCTGACTAT ATTTGTGGTACGAACCGCTACTTTTCCACCCTTTTGCGTGCGAACGAGAC GAAAGTGCCACGGAATGTCGAATCTTCGGCTGGCATGCCTGACAAGAGCG ACGTTTGAAGATGTATGCAAGCGTGCACCGTACTGCGAAGTTCATGTCGC GGTACAAGTAAAAACAAAACATGATGGACCGTGGGTGGTTCATTTTGGAT GGTGTCTTTCTTGTGATGTGTTTGGGGTTCCTGTGATGTTGATTGAATTC GGGATAAGACTCGTAAATTTTCCTCTGTCGTCGCGTGCGAGCGCCGCAAG AGTGTTGCAGACTGTGGGACGTGCGGCTGGCATGCGTCGCAAGGGTGACA TATGATCCGGAATCTATATGCGTTCGTAACGAGAGGCAATGCCCACCATG TGACGCGCTCGCTTGCATGCCCGCGCTTTTTCTCAGGGCTGAAACTGTGG GCAGTGGCATGTTTCTCTGGCTACTGCTTTGCGAGCTACACCGACGGCGG TTTCGTCGGAGATCCGAAGCTTCGGAAGTGGGCAGATTGCCCGCTCGGCC GGACTTGCCGGATGGTCTTGTTCGTATTGTTCGGGGCTTGCCCCAACCTC GCGGAGCAGCTCCTGCAATCTGGTACCTACGTGGCCATGGACAAGCTTTT TTCTTCGCCTGTCCTCTTCAACTGCCTTCTTTGGCACGGGTTGTTCGCTG TGGGTACACTGAAGGACATTCACCGGGGAGCCAGCCAGGCCGTGCGGTAT TGGACCACCACCAAGCAGACCCCGAGGCAGAAGGGGGACATGGCTTTCGC GAGGTTCGGGTTTTTGACCTTCACGCAGTGGAAGGACTCCAAGCTTGTCC GGCTTCTCTCCACCATCCACGTCAACAAGGGAGACTTCGTCCCAATCCCG TACAGGTGAAGCTTGCGTCTAGTCGTTGACTAAACAGTAGTCCAACAAAC ACTCTTCAACCTGCAGTTTTGGCGCGTCTGGAGCGAGAGGTTGAGGTCTG AATGCAGGGGGGGAGTGTAGTGGTATTTCGCGTACGCCCTGTGCGCATTG CGTGTCGTCGGTTCGCGCCCGTCCCCGTTTGGACTTCGGGTTAGAAATCG TCATTGCCCGTCTTAGTAAAACAGCAGCAGTGTTCATTTTTCCGCCGTCA TTGCATACTGTAATCCACACTGTTCACCTCCAGTACGCCCCCCTCCCCTT ATTTTCGGCCAAAACACATGAACACATGGCACCCAGAGCAGTAAGTCAAA ACGGCAGATGCGCGAGCATGGGGGGATCACAAATAACTGCCGACATTATC CCTTTGTACGATAGAAAGAGGGCGTGATGTAAGTCACGTTTAGCGATAGC TATCTACAGGGCCGCGTATATAATGTGTATGTTGTGCGTGCACTTGGCCT TCGGGCTTTTCTCCCGGGGTAAGGTTGAAGAActgtCTGTCTTCGTATCC CCGCGCTCGGAATATTTGACGCCAGGTTTTGATTGTTTCACTTTTTATTT AACAAAAACAATCTGACAGGATTACCCAGGAGTGCTCTTCAAAATAAAAC ATCACCAAGAGGGAAAAACAGACGTGGTTGCTGCGCGCAACTCACGTTCT TTTATTGCCTTTTTGGACCCCCACCTCAGGCGTTTCCTGCCAAAACTGGT TTTTGACGCTCGTGAAAACATCGCCCTGTCCCCTCACCTCCCACACTTTC CGTTCTTACTTTGTTCTTCCAGTAAATTCGCCCCGGGAAAAAAGAAGGAG ACACTGTGGCAGCCGCTGTGTCGACTCGCTTACAACACCTTCATGGGGGG GGTTGACCTCGCCGACCAACTAAACGGCTACTACCTTACCCTCCACAAGG CATACAACTATTTTTGGAGGCGCGTGTTCGAACAGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1141:62430..64517+

>mRNA_P-littoralis_Contig1141.20.1 ID=mRNA_P-littoralis_Contig1141.20.1|Name=mRNA_P-littoralis_Contig1141.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=768bp|location=Sequence derived from alignment at P-littoralis_Contig1141:62430..64517+ (Pylaiella littoralis U1_48)
ATGCTGAACGAGACGTGGAGCGGGGCGTGTCTTGTGGGGCAGTGGATATC
TTTCGACGAGCAGATGGTGTTGTGCGTGGGCCGGACCGCGAAGTTCATGC
TGCGGTATATGCCAAAAAAGCCCATCAAGAACGGGCTGAAACTGTGGGCA
GTGGCATGTTTCTCTGGCTACTGCTTTGCGAGCTACACCGACGGCGGTTT
CGTCGGAGATCCGAAGCTTCGGAAGTGGGCAGATTGCCCGCTCGGCCGGA
CTTGCCGGATGGTCTTGTTCGTATTGTTCGGGGCTTGCCCCAACCTCGCG
GAGCAGCTCCTGCAATCTGGTACCTACGTGGCCATGGACAAGCTTTTTTC
TTCGCCTGTCCTCTTCAACTGCCTTCTTTGGCACGGGTTGTTCGCTGTGG
GTACACTGAAGGACATTCACCGGGGAGCCAGCCAGGCCGTGCGGTATTGG
ACCACCACCAAGCAGACCCCGAGGCAGAAGGGGGACATGGCTTTCGCGAG
GTTCGGGTTTTTGACCTTCACGCAGTGGAAGGACTCCAAGCTTGTCCGGC
TTCTCTCCACCATCCACGTCAACAAGGGAGACTTCGTCCCAATCCCGTAC
AGTAAATTCGCCCCGGGAAAAAAGAAGGAGACACTGTGGCAGCCGCTGTG
TCGACTCGCTTACAACACCTTCATGGGGGGGGTTGACCTCGCCGACCAAC
TAAACGGCTACTACCTTACCCTCCACAAGGCATACAACTATTTTTGGAGG
CGCGTGTTCGAACAGAAG
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