mRNA_P-littoralis_Contig1141.15.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1141.15.1
Unique NamemRNA_P-littoralis_Contig1141.15.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1141.15.1 vs. uniprot
Match: A0A6H5KV31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV31_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 2.710e-44
Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = 1 
Query:    1 MPAAGIIRKVNHADTQGPAKQAIVVHADDMSRVIETLKINTGKESTSQYSGKLQTLPEFARVLRGAGIRFVAMNFPARCSYALPAKCAHVF 273
            MPAAG+IR+VNHAD QGPAKQAIVVHADDMSRVIETL+INTGKES SQY G  +TL EFARVLR  GIRFV +NFP RCSYALPA+CAH F
Sbjct:  239 MPAAGVIRRVNHADAQGPAKQAIVVHADDMSRVIETLQINTGKESASQYGGPPRTLTEFARVLRNEGIRFVVINFPVRCSYALPARCAHAF 329
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BLAST of mRNA_P-littoralis_Contig1141.15.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.440e-35
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    1 MPAAGIIRKVNHADTQGPAKQAIVVHADDMSRVIETLKINTGKESTSQYSGKLQTLPEFARVLRGAGIRFVAMNFPARCSYALPAK 258
            MPAAG+IR+VN+ +   PAKQAIVVHADDMSRVIETLKINT KES SQY G  +TLPEFARVL+  GIRFV MNFP+RCSYALPA+
Sbjct:  481 MPAAGVIRRVNYVEENRPAKQAIVVHADDMSRVIETLKINTKKESASQYGGPPRTLPEFARVLKSKGIRFVVMNFPSRCSYALPAR 566
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BLAST of mRNA_P-littoralis_Contig1141.15.1 vs. uniprot
Match: D7G2S5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S5_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 4.380e-19
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 1 
Query:    1 MPAAGIIRKVNHADTQGPAKQAIVVHADDMSRVIETLKINTGKESTSQYSGKLQTLPEFARVLRGAGIRFVAMNFPARCSYALPAKCAHVF 273
            +PAAG +R VN   + GPAK+AI++ A DM RV++ L ++  K S+SQY+G +  L   A  LR   IRFV ++FP  CSYA+PA+CAH+F
Sbjct:  512 LPAAGTMRSVNRRGS-GPAKRAILMCAHDMDRVVDLLGLDVNKPSSSQYTGAIVDLEGLATRLRVNSIRFVVVDFPEYCSYAIPARCAHMF 601
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1141.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KV31_9PHAE2.710e-4481.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP46_ECTSI2.440e-3576.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S5_ECTSI4.380e-1949.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1141contigP-littoralis_Contig1141:48977..49249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size275
Hectar predicted targeting categoryother localisation
Exons1
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789466.448095-CDS-P-littoralis_Contig1141:48976..492491680789466.448095-CDS-P-littoralis_Contig1141:48976..49249Pylaiella littoralis U1_48CDSP-littoralis_Contig1141 48977..49249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1141.15.1prot_P-littoralis_Contig1141.15.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1141 48977..49249 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1141.15.1

>prot_P-littoralis_Contig1141.15.1 ID=prot_P-littoralis_Contig1141.15.1|Name=mRNA_P-littoralis_Contig1141.15.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
MPAAGIIRKVNHADTQGPAKQAIVVHADDMSRVIETLKINTGKESTSQYS
GKLQTLPEFARVLRGAGIRFVAMNFPARCSYALPAKCAHVF
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mRNA from alignment at P-littoralis_Contig1141:48977..49249-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1141.15.1 ID=mRNA_P-littoralis_Contig1141.15.1|Name=mRNA_P-littoralis_Contig1141.15.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig1141:48977..49249- (Pylaiella littoralis U1_48)
ATGCCCGCAGCGGGCATCATACGGAAAGTTAACCACGCAGACACCCAGGG
GCCGGCCAAACAGGCCATCGTGGTGCATGCGGACGATATGTCTAGGGTGA
TCGAAACGCTGAAAATAAACACCGGGAAGGAATCCACCAGTCAGTACAGT
GGAAAGCTCCAGACGCTTCCGGAGTTCGCGAGGGTGCTGAGAGGTGCTGG
GATTAGGTTTGTGGCAATGAATTTTCCTGCGCGCTGCTCTTACGCCCTGC
CCGCGAAGTGTGCACACGTGTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1141:48977..49249-

>mRNA_P-littoralis_Contig1141.15.1 ID=mRNA_P-littoralis_Contig1141.15.1|Name=mRNA_P-littoralis_Contig1141.15.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig1141:48977..49249- (Pylaiella littoralis U1_48)
ATGCCCGCAGCGGGCATCATACGGAAAGTTAACCACGCAGACACCCAGGG
GCCGGCCAAACAGGCCATCGTGGTGCATGCGGACGATATGTCTAGGGTGA
TCGAAACGCTGAAAATAAACACCGGGAAGGAATCCACCAGTCAGTACAGT
GGAAAGCTCCAGACGCTTCCGGAGTTCGCGAGGGTGCTGAGAGGTGCTGG
GATTAGGTTTGTGGCAATGAATTTTCCTGCGCGCTGCTCTTACGCCCTGC
CCGCGAAGTGTGCACACGTGTTT
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