mRNA_P-littoralis_Contig1141.16.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1141.16.2
Unique NamemRNA_P-littoralis_Contig1141.16.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1141.16.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1141contigP-littoralis_Contig1141:50250..51368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size556
Hectar predicted targeting categoryother localisation
Exons3
Cds size555
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789466.3951764-CDS-P-littoralis_Contig1141:50249..505911680789466.3951764-CDS-P-littoralis_Contig1141:50249..50591Pylaiella littoralis U1_48CDSP-littoralis_Contig1141 50250..50591 -
1680789466.4062505-CDS-P-littoralis_Contig1141:50997..510721680789466.4062505-CDS-P-littoralis_Contig1141:50997..51072Pylaiella littoralis U1_48CDSP-littoralis_Contig1141 50998..51072 -
1680789466.4147022-CDS-P-littoralis_Contig1141:51230..513681680789466.4147022-CDS-P-littoralis_Contig1141:51230..51368Pylaiella littoralis U1_48CDSP-littoralis_Contig1141 51231..51368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1141.16.2prot_P-littoralis_Contig1141.16.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1141 50250..51368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1141.16.2

>prot_P-littoralis_Contig1141.16.2 ID=prot_P-littoralis_Contig1141.16.2|Name=mRNA_P-littoralis_Contig1141.16.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=185bp
TTFPIQKDALGVTDAEATWKHVKASVVSGIGRRGFKERLVVKTRKMSSGR
HTRMAVRCFAQGKPGGTTSQKTDCKLQVAITWPATAPPSVTIVILEHSRG
CRMEEGAVGLNNRNLTEEHDSARMRPLPAKRKRQHQIPCRGREAMSEETA
TVPVCITASHDREQGAETQKEAENALESFDAEHGA
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mRNA from alignment at P-littoralis_Contig1141:50250..51368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1141.16.2 ID=mRNA_P-littoralis_Contig1141.16.2|Name=mRNA_P-littoralis_Contig1141.16.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1119bp|location=Sequence derived from alignment at P-littoralis_Contig1141:50250..51368- (Pylaiella littoralis U1_48)
ACCACTTTCCCCATCCAAAAAGACGCACTTGGGGTAACAGATGCAGAGGC
CACATGGAAACATGTGAAGGCTAGCGTCGTCTCAGGGATTGGACGCCGTG
GTTTCAAGGAACGCTTGGTTGTCAAGACGAGAAAAATGGTGAGAGCTCGA
AGCTGTTGCTTGCTCTGCGACGTGCGTCAGATTGAAAACTCCCATGATGT
ACATGGAGCTTTGATCTTCGAAATTCTCCGCATGCATCTTTCGTGCCGCA
ACAAAAAACTCCTCTCTCCGTTCTCTGTCTCGGCGTGTTTCCCCAGAGCT
CTGGTAGACACACAAGGATGGCGGTCAGATGTTTTGCACAAGGGAAGCCG
GGTGGAACCACTTCACAGAAGGTAAGTTGGTACAGTTGTTTCCTGAACTA
GAGCACATTCGCCACATGAGACCTGTGGTGACGTTGTTGATGTTTCAAAC
CAGCAACAATGATAATTCCATTTCGATCCGTTGTCGGGAGGGCCGAGGGG
GAAAGGGCTTGAGTTTTGTTTGACCATGGTTGGATTAGGGGTTTTGGGCG
TAGACAATTTCCTTAGGGTGCGTGCCTTGACTACAGGTGTAGTATTTCGA
GAAATATTGCAGCACTTGAGATTTGGCCATCGAGTTCGTTTTAACTTGGA
AGAGGTTCATTACGGACGCTACAATTGATTTTTGTTTTGTCTGTCTCGAT
CTATCTGGAATTGTCGGAGGGCAAACGAAATAATAATACTGAGAATTCCA
ATCTTTCTGTCATGTTGTCCATTCCAGACCGACTGCAAATTGCAGGTGGC
AATAACGTGGCCGGCAACGGCGCCCCCGTCAGTTACAATAGTGATCCTCG
AGCACAGCCGTGGCTGCAGGATGGAAGAAGGTGCCGTGGGACTCAACAAC
AGAAACCTGACTGAGGAACATGATAGTGCGAGAATGCGGCCTCTACCTGC
GAAAAGAAAGAGACAGCACCAGATCCCGTGCCGTGGACGCGAGGCAATGA
GCGAGGAGACCGCGACCGTACCCGTGTGCATCACAGCATCACATGATCGC
GAGCAAGGGGCAGAGACTCAAAAAGAGGCCGAGAACGCACTGGAGTCATT
CGATGCTGAACATGGGGCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1141:50250..51368-

>mRNA_P-littoralis_Contig1141.16.2 ID=mRNA_P-littoralis_Contig1141.16.2|Name=mRNA_P-littoralis_Contig1141.16.2|organism=Pylaiella littoralis U1_48|type=CDS|length=555bp|location=Sequence derived from alignment at P-littoralis_Contig1141:50250..51368- (Pylaiella littoralis U1_48)
ACCACTTTCCCCATCCAAAAAGACGCACTTGGGGTAACAGATGCAGAGGC
CACATGGAAACATGTGAAGGCTAGCGTCGTCTCAGGGATTGGACGCCGTG
GTTTCAAGGAACGCTTGGTTGTCAAGACGAGAAAAATGAGCTCTGGTAGA
CACACAAGGATGGCGGTCAGATGTTTTGCACAAGGGAAGCCGGGTGGAAC
CACTTCACAGAAGACCGACTGCAAATTGCAGGTGGCAATAACGTGGCCGG
CAACGGCGCCCCCGTCAGTTACAATAGTGATCCTCGAGCACAGCCGTGGC
TGCAGGATGGAAGAAGGTGCCGTGGGACTCAACAACAGAAACCTGACTGA
GGAACATGATAGTGCGAGAATGCGGCCTCTACCTGCGAAAAGAAAGAGAC
AGCACCAGATCCCGTGCCGTGGACGCGAGGCAATGAGCGAGGAGACCGCG
ACCGTACCCGTGTGCATCACAGCATCACATGATCGCGAGCAAGGGGCAGA
GACTCAAAAAGAGGCCGAGAACGCACTGGAGTCATTCGATGCTGAACATG
GGGCA
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