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Homology
BLAST of mRNA_P-littoralis_Contig1140.9.2 vs. uniprot
Match: A0A6H5K7G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7G4_9PHAE) HSP 1 Score: 252 bits (644), Expect = 6.980e-71 Identity = 231/505 (45.74%), Postives = 282/505 (55.84%), Query Frame = 3
Query: 357 VLRCLGPLEWIKCASVCPAWRDTILGGXXXXXXXXXXXXXXXXXXXXXXXPVASASP--VVLPSTGRAMSTAGAEGVTTTP---------SEEGAXXXXXXXXXXXXXARVATADLWCEFAVSAMQYRDPCATAHIGDNNGEGNINTNSSXXXXXXXXXXXXXXXTTGVTRCRG-RASPCSHRTFAPREFYRNVCLEGDPIVLGPPLRATAARIGGKTAGRGEVSVAKVSLTDVAAASAARCRHPRAFTEFLLQWNRHRYC--RATAVTKIKSFRNYLQFTHHSLLCEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA--MLNEALSVFTRLFVLCRRCRRPQTALFATEDNGARPFSAPRSGGSSSAYNGGGKSPAILAPSLAPSGSPRYEGWGVTLWVECQGEGCGLTSRVGGSGAXXXXXXXXXGPSPWLVKFSRYVLRRGWKDINTLDEDHGTEWFSDTSPAGVRRRQDEARASSIGLEALARRGS-GGDGD 1820
+LRCLGPL W+ CASVC W D IL AS +P VV+P+ + +TA G TT+P S+ GA V DLW EFAV+ ++Y P + D + G+ + S+ T R + RA R A F+R+VCLEGDP VLGPPLRAT A G T GR E ++A VSL DV+ A+ AR R PRA +FL W R+ R T V I+ N +QFT+ S + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +L+EAL VFT+LFVLC RCRRP T LFA +D+ + + +GG SA G++ A++ P G VTLWVECQ + CG S + + XXXXX P PWL KF+RYV R WK INTL EDHGTEWFSDTSPA V+RR +EARA+S+GL+ALARRGS GGD D
Sbjct: 1 MLRCLGPLSWLHCASVCSGWSDAILSRKPKTARGPAALAVAGEPTSGG----ASTAPAIVVVPAGEQETATAPTSG-TTSPAADRTEASISDGGAEAVNGKEKAAAAATAVVKTDLWREFAVTVIRYNGPA----VADRDIGGSGTSGSNCPTCSFGQNHRYHHNLTRDRRSKPLRALHPPSRGGAHGHFFRHVCLEGDPTVLGPPLRATIAASGSGT-GRRETAIATVSLADVSKAAEARFRRPRALIKFLWLWIRYSNTEHRLTTVPTIELTPNNIQFTYKSPCGRRRGIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLSEALGVFTKLFVLCHRCRRPCTTLFANQDDASN-VAQNVAGGKESA----GRTAAVI---------PEVRGRRVTLWVECQEDWCGWRSGM----SVAAGXXXXXAPPPWLAKFARYVQSRAWKGINTLPEDHGTEWFSDTSPAAVQRRLNEARANSVGLDALARRGSDGGDSD 477
BLAST of mRNA_P-littoralis_Contig1140.9.2 vs. uniprot
Match: D7FLN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN6_ECTSI) HSP 1 Score: 104 bits (259), Expect = 5.140e-23 Identity = 53/85 (62.35%), Postives = 63/85 (74.12%), Query Frame = 3
Query: 1620 PSPWLVKFSRYVLRRGWKDINTLDEDHGTEWFSDTSPAGVRRRQDEARASSIGLEALARRGSGGDGDRRGGDGGDIASGNSQSSS 1874
PSPWL KF+RYV R WK INTL EDHGTEWFSDTSPA V+RR +EARA+S+GL+ALARR + GGD ++ G+ SSS
Sbjct: 13 PSPWLAKFARYVQSRAWKGINTLPEDHGTEWFSDTSPAAVQRRLNEARANSVGLDALARR------ESDGGDNDGLSDGSGASSS 91
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2702 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-17_000450.1 |
| Cds size | 1599 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789465.970416-UTR-P-littoralis_Contig1140:19332..19617 | 1680789465.970416-UTR-P-littoralis_Contig1140:19332..19617 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1140 19333..19617 + |
| 1680789465.9798658-UTR-P-littoralis_Contig1140:20932..20940 | 1680789465.9798658-UTR-P-littoralis_Contig1140:20932..20940 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1140 20933..20940 + |
| 1680789466.0180025-UTR-P-littoralis_Contig1140:23485..24295 | 1680789466.0180025-UTR-P-littoralis_Contig1140:23485..24295 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1140 23486..24295 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789465.990746-CDS-P-littoralis_Contig1140:20940..21704 | 1680789465.990746-CDS-P-littoralis_Contig1140:20940..21704 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1140 20941..21704 + |
| 1680789465.9993384-CDS-P-littoralis_Contig1140:22272..22888 | 1680789465.9993384-CDS-P-littoralis_Contig1140:22272..22888 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1140 22273..22888 + |
| 1680789466.0082505-CDS-P-littoralis_Contig1140:23266..23485 | 1680789466.0082505-CDS-P-littoralis_Contig1140:23266..23485 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1140 23267..23485 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1140.9.2 >prot_P-littoralis_Contig1140.9.2 ID=prot_P-littoralis_Contig1140.9.2|Name=mRNA_P-littoralis_Contig1140.9.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=533bp
MDVDHFTATQTALRIPELLTSVLRCLGPLEWIKCASVCPAWRDTILGGGD DQAKQHRPEEAAAAAASATTTPVASASPVVLPSTGRAMSTAGAEGVTTTP SEEGAGEGETTVTVAVAAARVATADLWCEFAVSAMQYRDPCATAHIGDNN GEGNINTNSSSACCSGRIHRRHHHHTTGVTRCRGRASPCSHRTFAPREFY RNVCLEGDPIVLGPPLRATAARIGGKTAGRGEVSVAKVSLTDVAAASAAR CRHPRAFTEFLLQWNRHRYCRATAVTKIKSFRNYLQFTHHSLLCEKKKGA KGGSSASSSSCSSSMSGRGKAASPSSKCCATTTAMLNEALSVFTRLFVLC RRCRRPQTALFATEDNGARPFSAPRSGGSSSAYNGGGKSPAILAPSLAPS GSPRYEGWGVTLWVECQGEGCGLTSRVGGSGAAGSGGSGGTGPSPWLVKF SRYVLRRGWKDINTLDEDHGTEWFSDTSPAGVRRRQDEARASSIGLEALA RRGSGGDGDRRGGDGGDIASGNSQSSSSSDGD* back to topmRNA from alignment at P-littoralis_Contig1140:19333..24295+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig1140.9.2 ID=mRNA_P-littoralis_Contig1140.9.2|Name=mRNA_P-littoralis_Contig1140.9.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4963bp|location=Sequence derived from alignment at P-littoralis_Contig1140:19333..24295+ (Pylaiella littoralis U1_48) CTCCACGACACAACAAAGTGACACGTGCTTTACTTGTACACCGACCGCGG
ATACGTCAGCAAGTTTTATCCCTGGGGCGTGCTCTTGCCGCTGTGGAGAC
GCCGGTAGGTTTCGTCCGGAGCCGTGCTGTTAGTATTCTATCTTCTGTAG
TGCGCGAAACACCTTTCCGGAAAATCATCCCCCTAAAAAGTCGTAACATC
AACTATAAAACATCGTGAACATCTCGAACGCGAAAGCGGAAAAGCGGCGC
TTGCAGCTAAGCTGGGTGTTCTGCGCACACGCAAGGTGAGCGGAGGGCGA
ACTGGGTATAAACGGTAATTATCGCAGTCGATGGGAAGGAGTTGGTCCTG
CATGCAGTACCTACTGTAAATGCCAGAGTTCACATTTTTGGCATTTTTTC
CACGTTGTGTGTTTGTTTATGCGTTTAGTCTATCCCGCGTGTGTACCGGT
ACAGCAGTACTACTGCCGTACAGTAGCAGTATCATATCGCGCGTCTCCCG
TTCCTTCGGTCCATAAACTTGCACAGCAGTATTCGGACGCCAGTCTACCG
GTACACCACTGTTTGTGTATCATACTTGTATTGAAATAGGTAACCACGAC
CCAGCACTTCCCAGTGTACACCAACCACGCAATCCGCCTCTCCTGATGGT
TAGGTCTAGGGTTAGGTCCCCCGAGGTCTCCCAGCGGGAGGAGCACAACT
CAAGGAGCCCAACTCAACAGAACCAAGTCAACCCAAGCCAACCCCACTCT
GCTCGATCACACCCTGCCCTACCATAGCTTATCCACCCAACCTAATCCAG
TCGTTGTGCCCCTACCGAGAAACAAGTCACAAATATTGGGTGCTGCATGA
CCTTCAAACATTGAAACTGCACAAGCTTCCCTCACGAAATGGTCTGCTAC
CGCTGCATGGTACTTCGAAGTATGATACGGAGTATATACGAAGTACAACG
CAGTAGGTCACAAAGCAAAACTGCAGCAGTAATGCTGTATCATACAATAG
GCACCTAGCCTCCTTTTCTACATTTCTGTAGTCTAAACAACCCACAGTAC
ATACTTGTACATTCAGACGCAAAGCAGCAAAGAGTGGCAGAGCGAACAGC
GCCAGCAACGAGCCGACATAGATTCAGTCGCAGAAAGCCTTCAGTGTACT
CATCCAACACTTGGTGGGAGTCATTTCACTTCGGCGAAGTTCAGGGGGTT
CACATCGTACGTCTTGTACAGCTCAGTGCGGTGTCACCTGCTTCCTGGTG
TATTTGTTGTCATTCCATCATTCTGGGCGCCAACCGACACCTTTCAGCAT
ATGGGACGTACCAGCCGGGGTTACACCTGTCCGGGGTCACACCTGTACAT
GATTCGACGCACTTTCAGACTACGCACGTAGACTTGTAGCTGCATGCTGA
CAAAAGGTCCGCAATCTGCGCTTGCTTGCCCGTGTCCCGTGTCCACAAAA
GGGGTGGGGCAAATCGTGTACGGCGGGGGCACCGCTTGTCAACTCGATAC
TCCGTACAACGAGAGCGTTACAACTCATTTCGCTGCTTTCTCTCGTCTCT
CCCAGAATGCTCAACCCCCCCCCCCCTCCTCGCTTGAACCCATATTTCAG
CTCTCATTATGGACGTGGACCATTTCACTGCAACGCAGACAGCCCTTCGG
ATACCCGAGCTGCTGACGAGCGTTCTGCGGTGCCTCGGGCCGCTGGAATG
GATCAAGTGCGCCTCCGTCTGCCCGGCCTGGCGCGATACTATTCTAGGCG
GCGGCGACGATCAAGCTAAGCAGCATAGGCCTGAAGAGGCAGCAGCAGCG
GCAGCATCAGCAACAACTACACCAGTAGCGTCAGCGTCGCCGGTGGTACT
ACCGTCAACGGGAAGAGCGATGTCAACGGCAGGAGCTGAGGGAGTAACGA
CGACGCCGAGTGAGGAGGGGGCGGGGGAAGGGGAGACGACCGTGACGGTG
GCAGTTGCGGCGGCGAGGGTGGCTACGGCCGACCTATGGTGCGAGTTTGC
CGTTTCGGCCATGCAGTACCGCGACCCATGCGCCACCGCTCACATTGGCG
ACAACAACGGCGAGGGCAACATCAACACCAATAGCAGCAGCGCCTGCTGC
TCCGGCCGTATCCACCGCCGCCACCACCACCATACCACCGGTGTCACTAG
ATGCCGTGGACGGGCATCACCATGTTCGCACCGCACGTTTGCACCCAGGG
AGTTCTATAGGAACGTTTGCCTCGAGGGAGATCCGATAGTGCTCGGGCCG
CCCCTGAGAGCAACGGCCGCTCGAATCGGTGGCAAAACCGCCGGTCGGGG
GGAGGTGTCAGTCGCGAAGGTTAGCTTGACGGATGTGGCTGCAGCCTCGG
CGGCTCGATGTCGCCATCCTAGGTATCACTGCATTTGCTCATTGGCGGTT
AGCAAGGGGTCCCCCTCCCCCCCCACTGGCACTTGCCATGCGTTTGATTC
TAGCGGGTGAAAGCATGTCAACACTTGTAGCAGTGCAAACAATCTTGAGA
GAATGAATTCGATTTTCCACGGAAATGTGACCTACGAAGCTTCACGCGGC
CCGTCGTTCGAAACTAGGGCGACATTCCCCTGCGAGTCATGGATACGATT
TTTTCCTCACTCGGTCGAGTTCCTTGCGATCGTTCTAATTCGAATCGCGC
TGATGTTTCACACACGGGGCGTTGCATGGAATTAGTTTGTTATTGCAGCT
CTCAAGAGAGGAACACACCATCTACATGCATGCGCTTCTATCGTCCCCCT
AGGGCCTTTTCCTCTCTCACTCTCTTCCTCTCTCGCGGAGACCTCTAGTT
TTGAAGAGAGTTCAAACGTCTGAGCAAGGCGAATCCTTCAACTGTTGAAT
TCTCCATATCTCTCAGTCCTGCTTTCGTTCATTCGCGCTAAGCCCACCTC
ACGGCCTGCCTCTTGGGGGCGAATAACGATCACGCGGCAGGGCTTTCACC
GAATTCCTGTTGCAGTGGAACCGCCACCGCTACTGCAGAGCAACAGCCGT
CACGAAGATCAAGTCGTTCCGGAACTACCTCCAGTTCACGCACCACTCAT
TGCTCTGTGAGAAAAAAAAAGGCGCGAAGGGCGGAAGCTCAGCGAGCAGC
AGCAGCTGCAGTAGCAGCATGAGTGGCCGTGGTAAAGCGGCTTCTCCGTC
ATCAAAGTGTTGCGCGACAACAACGGCCATGCTGAACGAGGCTCTCTCGG
TGTTCACTCGGCTCTTCGTGCTCTGCCGCCGGTGCCGCCGCCCCCAGACA
GCACTCTTCGCCACCGAAGACAACGGCGCCCGCCCTTTTTCGGCTCCGCG
CAGCGGCGGCAGCAGCAGCGCGTACAACGGCGGCGGTAAATCACCAGCAA
TATTAGCACCCTCTTTGGCGCCATCGGGATCGCCGAGGTATGAGGGATGG
GGGGTGACACTCTGGGTAGAATGCCAGGGCGAAGGTTGTGGCTTGACGTC
GAGAGTGGGGGGTTCTGGTGCTGCAGGCAGCGGCGGCAGCGGTGGCACGG
GACCATCGCCGTGGCTGGTCAAGTTCTCGAGATACGTCCTGAGGCGTGGG
TGGAAGGTATACCTGCATGATGCATGTCTTGTCCCTGTTTTGGGTCGGTG
TGTAACCGTGCCACATTTTCCCAAGTACTGCCTGCCCTTATGGCGTTGCC
ATTCTTGGTTTTGTGTCCAGCCTACATTAGGTCATGGTAGGCACGAAGTG
TGTCTGGTCAAAGTTTAGAATGCCTTTTTGCGAGTGACAAAAAGTTACCG
GGAGCGCTGTCGTCACCTCATATGTAAACCGGCCTGAGGTTGGTCTCGAC
CGGTGTCGGGATGTTTCGCCCTCCGCCACCCTCTTCCTTTATTTTGGCGG
TAATACCCTACATCCGTGCATGACGATTGGAGTTTACACTCGCCCCATCC
CTCACTCTTCTTTGTGCTTGTTCCCGGAAAGCAGGATATCAACACCCTTG
ACGAGGATCACGGGACGGAGTGGTTCAGCGACACCTCCCCTGCAGGAGTG
CGGCGTCGCCAAGACGAGGCGAGGGCGAGCTCGATCGGCCTGGAAGCTCT
CGCGAGACGAGGCAGTGGCGGCGACGGCGACAGGAGGGGCGGCGACGGCG
GCGATATCGCCAGCGGAAACAGCCAAAGCAGCAGCAGCAGTGACGGCGAC
TAGAGATTCCCCTTCGAAATATTTCTCTTGTGCGTGTTTACGGGCTACAA
AACGTGCTTAAAATTCGGATTTTGGCGTGGAGTAAGGCCTGGAACAGCGT
TTCAGGGACCTCCTGGCCTATACTCCTGCCATGAGGGTTTCTTGCCAGCA
GTGGCAACGGGGGCAGTGGTAGAGGACAGCGACGCTGAACGTAGCCCTGG
GTTTTGACTCATTTGAAAAAAAAGGACACTGCTGTTGTGTGGGCCAAGAT
GCGACAGCGCGACTACTGGTAATGGTTTGTGTTGGATTGGAGGTTGTGTG
TATCAAACGATGTGATCAGGTGGGACCTCCCATGGAAGGTAAGCGTGTTT
CTTGAACTATGACGGCCTCTGAATGGGTCGCTACTTCCTTTGGTGACGTC
TTGCATAACACCCCCTAGCGAGATCTTCACAACAAGTGTATATCACACTT
TCGTAGGTAAATATATCGTGTAGATATCTTCACAACTAACGAGGGCGGCG
TTGGCCAGGCCTCGTCGAGAGCTTTTAAAATATGGTGCTGTGATGTTTAC
GCTCTTTGTTGCGAACGAGCAGATTTGGAAATGTAAAAAACACGTCGTAC
CTGGTGTTGTTGCGTGCATACGGTATTCATAGTCGAAGAGACCTGCTCGG
CAGGCACAGCATCAGCATTGAACTTGGGCGCCATCCCCGCTGCAGAGAAA
TAGCATATTTATACAAAAAACATTCGCACGGAGTATTGGTTGGAGGTGAA
AGTTACTTCTCGAATCTCTCAATCTCCTGAATACTTGAAAAATTATACGA
AGTGGTAGTAGTA back to topCoding sequence (CDS) from alignment at P-littoralis_Contig1140:19333..24295+ >mRNA_P-littoralis_Contig1140.9.2 ID=mRNA_P-littoralis_Contig1140.9.2|Name=mRNA_P-littoralis_Contig1140.9.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1599bp|location=Sequence derived from alignment at P-littoralis_Contig1140:19333..24295+ (Pylaiella littoralis U1_48) ATGGACGTGGACCATTTCACTGCAACGCAGACAGCCCTTCGGATACCCGA GCTGCTGACGAGCGTTCTGCGGTGCCTCGGGCCGCTGGAATGGATCAAGT GCGCCTCCGTCTGCCCGGCCTGGCGCGATACTATTCTAGGCGGCGGCGAC GATCAAGCTAAGCAGCATAGGCCTGAAGAGGCAGCAGCAGCGGCAGCATC AGCAACAACTACACCAGTAGCGTCAGCGTCGCCGGTGGTACTACCGTCAA CGGGAAGAGCGATGTCAACGGCAGGAGCTGAGGGAGTAACGACGACGCCG AGTGAGGAGGGGGCGGGGGAAGGGGAGACGACCGTGACGGTGGCAGTTGC GGCGGCGAGGGTGGCTACGGCCGACCTATGGTGCGAGTTTGCCGTTTCGG CCATGCAGTACCGCGACCCATGCGCCACCGCTCACATTGGCGACAACAAC GGCGAGGGCAACATCAACACCAATAGCAGCAGCGCCTGCTGCTCCGGCCG TATCCACCGCCGCCACCACCACCATACCACCGGTGTCACTAGATGCCGTG GACGGGCATCACCATGTTCGCACCGCACGTTTGCACCCAGGGAGTTCTAT AGGAACGTTTGCCTCGAGGGAGATCCGATAGTGCTCGGGCCGCCCCTGAG AGCAACGGCCGCTCGAATCGGTGGCAAAACCGCCGGTCGGGGGGAGGTGT CAGTCGCGAAGGTTAGCTTGACGGATGTGGCTGCAGCCTCGGCGGCTCGA TGTCGCCATCCTAGGGCTTTCACCGAATTCCTGTTGCAGTGGAACCGCCA CCGCTACTGCAGAGCAACAGCCGTCACGAAGATCAAGTCGTTCCGGAACT ACCTCCAGTTCACGCACCACTCATTGCTCTGTGAGAAAAAAAAAGGCGCG AAGGGCGGAAGCTCAGCGAGCAGCAGCAGCTGCAGTAGCAGCATGAGTGG CCGTGGTAAAGCGGCTTCTCCGTCATCAAAGTGTTGCGCGACAACAACGG CCATGCTGAACGAGGCTCTCTCGGTGTTCACTCGGCTCTTCGTGCTCTGC CGCCGGTGCCGCCGCCCCCAGACAGCACTCTTCGCCACCGAAGACAACGG CGCCCGCCCTTTTTCGGCTCCGCGCAGCGGCGGCAGCAGCAGCGCGTACA ACGGCGGCGGTAAATCACCAGCAATATTAGCACCCTCTTTGGCGCCATCG GGATCGCCGAGGTATGAGGGATGGGGGGTGACACTCTGGGTAGAATGCCA GGGCGAAGGTTGTGGCTTGACGTCGAGAGTGGGGGGTTCTGGTGCTGCAG GCAGCGGCGGCAGCGGTGGCACGGGACCATCGCCGTGGCTGGTCAAGTTC TCGAGATACGTCCTGAGGCGTGGGTGGAAGGATATCAACACCCTTGACGA GGATCACGGGACGGAGTGGTTCAGCGACACCTCCCCTGCAGGAGTGCGGC GTCGCCAAGACGAGGCGAGGGCGAGCTCGATCGGCCTGGAAGCTCTCGCG AGACGAGGCAGTGGCGGCGACGGCGACAGGAGGGGCGGCGACGGCGGCGA TATCGCCAGCGGAAACAGCCAAAGCAGCAGCAGCAGTGACGGCGACTAG back to top
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