mRNA_P-littoralis_Contig1140.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1140.4.1
Unique NamemRNA_P-littoralis_Contig1140.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1140.4.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 5.270e-31
Identity = 76/165 (46.06%), Postives = 96/165 (58.18%), Query Frame = 1 
Query:   13 RSRCVHTLIVAIFTGVLGRGSTVARSGTTADADDASGSASSGGPVLPRTPQLLAKRSPDDYRLKVDDMLFYISRHKFPPIRPSELPPVTAEAGRRFKVSQRKCTCGGTLDALEDEDAKVVTGAPNIVTVEVERRKCGSCGRPAWASDDWRKTGVFNYDNKYLVEL 507
            R    HTL+VA+F+ + G  S  + +G    A+DAS    SGG  LPRTPQ+      + Y  K+ DML Y+ R   PP  PS L  ++    RR  VSQ KCTCGG L    D  A +V        +EVERRKCG+CG  AWASD+WRKT VFNY+  +LV+L
Sbjct:  279 RRLXAHTLVVAVFSRI-GLDSMASSTGEGGAAEDAS----SGGSALPRTPQVFLDSDAESYCSKLADMLTYMRRLALPPTAPSGLARLSETPARRLMVSQTKCTCGGELLPEADVIATLV--------MEVERRKCGACGACAWASDNWRKTSVFNYNKYFLVDL 430
[Close]
BLAST of mRNA_P-littoralis_Contig1140.4.1 vs. uniprot
Match: A0A6H5JLK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLK4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 7.330e-25
Identity = 57/120 (47.50%), Postives = 71/120 (59.17%), Query Frame = 1 
Query:  148 LPRTPQLLAKRSPDDYRLKVDDMLFYISRHKFPPIRPSELPPVTAEAGRRFKVSQRKCTCGGTLDALEDEDAKVVTGAPNIVTVEVERRKCGSCGRPAWASDDWRKTGVFNYDNKYLVEL 507
            LPRTP++      + +  K+ DML Y+ R   PP  PS L  ++    RR  VSQ KCTCGG L    D +A +VT        EVERRKCG+CG  AWASD+ RKT VFN  N +LV+L
Sbjct:  101 LPRTPRVFLDSDAESFCSKLADMLTYMRRLALPPTAPSGLARISVTPARRLVVSQTKCTCGGELLPEADVNATLVT--------EVERRKCGTCGACAWASDNLRKTSVFNLKNYFLVKL 212
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BLAST of mRNA_P-littoralis_Contig1140.4.1 vs. uniprot
Match: D7G2H3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H3_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.540e-19
Identity = 56/125 (44.80%), Postives = 72/125 (57.60%), Query Frame = 1 
Query:    1 KEKKRSRCVHTLIVAIFTGVLGRGSTVARSGTTADADDASGSASSGGPVLPRTPQLLAKRSPDDYRLKVDDMLFYISRHKFPPIRPSELPPVTAEAGRRFKVSQRKCTCGGTLDALEDEDAKVVT 375
            K KKR+RC HTL+VA+F+ + G  ST + +G       A+  ASSGG  LPRTPQ+      + Y  K+ DML Y+ R   PP  PS L  ++    RR  VSQ KCTCGG L    D +A +VT
Sbjct:  119 KNKKRARCAHTLVVAVFSRI-GLDSTASSTGE----GGAAAGASSGGSALPRTPQVFLDSDAESYCSKLADMLTYMRRLALPPTAPSGLARLSETPARRLVVSQTKCTCGGELLPEADVNATLVT 238
[Close]
BLAST of mRNA_P-littoralis_Contig1140.4.1 vs. uniprot
Match: A0A6H5L0Y4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Y4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.160e-14
Identity = 58/175 (33.14%), Postives = 83/175 (47.43%), Query Frame = 1 
Query:    4 EKKRSRCVHTLIVAIFTGVLGRGSTVARSGTTADADDASGSASSGGPVLPRTPQLLAKRSPDDYRLKVDDMLFYISRHKFPPIRPSEL----PPVTAEAGRRFKVSQRKCTCGGTLDALEDEDAKV---VTGAPNIVTVEVERRKCGSCGRPAWASDDWRKTGVFNYDNKYLVEL 507
            EKK  +C+HTL+VA+    L     +   G      D  G  +  G   PRT Q +  +    YR  + + L  +S +KFP   P  L        A A   +  SQ+ C+  G     E++   V   +T  P +  V V   +C +CG    ASD+WR+TG+FNY+N YLVEL
Sbjct:   21 EKKNRKCLHTLVVAL---ALWHEEGMRDEGLGVGQVDVDGDRTPDG--TPRTAQKMLDKDAPAYRKGLANCLNTMSVYKFPENLPFGLGRRGATTNANASITYTTSQKTCSGCGRDFPTENQHTVVATRLTEGPGMSKVNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVEL 190
[Close]
BLAST of mRNA_P-littoralis_Contig1140.4.1 vs. uniprot
Match: A0A6H5JPP3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP3_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 6.450e-13
Identity = 59/176 (33.52%), Postives = 86/176 (48.86%), Query Frame = 1 
Query:    4 EKKRSRCVHTLIVAIFTGVLGRGSTVARSGTTADADDASGSASSGGPVLPRTPQLLAKRSPDDYRLKVDDMLFYISRHKFPPIRPSEL----PPVTAEAGRRFKVSQRKCT-CGGTLDALEDEDAKV---VTGAPNIVTVEVERRKCGSCGRPAWASDDWRKTGVFNYDNKYLVEL 507
            EKK  +C+HTL+VA+    L +   +   G   +  D  G     G   PRT Q +  +    YR  + + L  +S  KFP   P  L        A A   +  SQ+ C+ CG    A E + + V   +T  P +  V V   +C +CG   +A+D+WR+TG+FNY+N YLVEL
Sbjct:  146 EKKNRKCLHTLVVAL---ALWQEEGMRDEGLGVEQVDVDGGRIPDG--TPRTAQKMLDKDAPAYRKCLANCLNTMSVIKFPENLPFGLGRRGATTNANASITYTTSQKTCSGCGRDFPA-ESQHSVVPTRLTEGPGMSKVNVHTNECETCGIHGFANDNWRETGLFNYNNSYLVEL 315
[Close]
BLAST of mRNA_P-littoralis_Contig1140.4.1 vs. uniprot
Match: A0A6H5JWX4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWX4_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 8.390e-13
Identity = 58/175 (33.14%), Postives = 83/175 (47.43%), Query Frame = 1 
Query:    4 EKKRSRCVHTLIVAIFTGVLGRGSTVARSGTTADADDASGSASSGGPVLPRTPQLLAKRSPDDYRLKVDDMLFYISRHKFPPIRPSEL----PPVTAEAGRRFKVSQRKCTCGGTLDALEDEDAKV---VTGAPNIVTVEVERRKCGSCGRPAWASDDWRKTGVFNYDNKYLVEL 507
            EKK  +C+HTL+VA+    L +   +   G      D  G     G   PRT Q +  +    YR  + + L  +S +KFP   P  L        A A   +  SQ+ C+  G     E++   V   +T  P +  V V   +C +CG    ASD+WR+TG+FNY+N YLVEL
Sbjct:  146 EKKDRKCLHTLVVAL---ALWQEEGMRDEGLGVGQVDMDGGRIPDG--TPRTAQKMLDKDAPAYRKGLANCLNTMSVYKFPENLPFGLGRRGATTNANASITYTTSQKTCSGCGRDFHTENQHTVVATRLTEGPGMSKVNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVEL 315
[Close]
BLAST of mRNA_P-littoralis_Contig1140.4.1 vs. uniprot
Match: A0A6H5K6Y4_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 9.650e-12
Identity = 57/175 (32.57%), Postives = 80/175 (45.71%), Query Frame = 1 
Query:    4 EKKRSRCVHTLIVAIFTGVLGRGSTVARSGTTADADDASGSASSGGPVLPRTPQLLAKRSPDDYRLKVDDMLFYISRHKFPPIRPSEL----PPVTAEAGRRFKVSQRKCT-CGGTLDALEDED--AKVVTGAPNIVTVEVERRKCGSCGRPAWASDDWRKTGVFNYDNKYLVEL 507
            EKK  +C+HTL+VA+    L +   +   G      D  G     G   PRT Q +  +    YR  + + L  +S +KFP   P  L        A     +  SQ+ C+ CG            A  +T  P +  V V   +C +CG    ASD+WR+TG+FNY+N YLVEL
Sbjct:   63 EKKNRKCLHTLVVAL---ALWQEEGMRDEGLGVGQVDVDGGRIPDG--TPRTAQKMLDKDAPAYRKGLANCLNTMSVYKFPENLPFGLGRRGATTNANTSITYTTSQKTCSGCGRDFPTGNQYIVVATRLTEGPGMSKVNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVEL 232
[Close]
BLAST of mRNA_P-littoralis_Contig1140.4.1 vs. uniprot
Match: A0A6H5JRE3_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE3_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.150e-11
Identity = 44/126 (34.92%), Postives = 63/126 (50.00%), Query Frame = 1 
Query:  151 PRTPQLLAKRSPDDYRLKVDDMLFYISRHKFPPIRPSEL----PPVTAEAGRRFKVSQRKCTCGGTLDALEDEDAKV---VTGAPNIVTVEVERRKCGSCGRPAWASDDWRKTGVFNYDNKYLVEL 507
            PRT Q +  +    YR  + + L  +S +KFP   P  L        A A   +  SQ+ C+  G     E++   V   +T  P +  V V   +C +CG    ASD+WR+TG+FNY+N YLVEL
Sbjct:   23 PRTAQKMLDKDAPAYRKGLANCLNTMSVYKFPENLPFGLGRRGATTNANASITYTTSQKTCSGCGRDFPTENQLTVVATRLTEGPGMSKVNVHANECETCGIHGLASDNWRETGLFNYNNSYLVEL 148
[Close]
BLAST of mRNA_P-littoralis_Contig1140.4.1 vs. uniprot
Match: A0A6H5JGH9_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGH9_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 9.850e-10
Identity = 56/175 (32.00%), Postives = 78/175 (44.57%), Query Frame = 1 
Query:    4 EKKRSRCVHTLIVAIFTGVLGRGSTVARSGTTADADDASGSASSGGPVLPRTPQLLAKRSPDDYRLKVDDMLFYISRHKFPPIRPSELPP----VTAEAGRRFKVSQRKCT-CGGTLDALEDED--AKVVTGAPNIVTVEVERRKCGSCGRPAWASDDWRKTGVFNYDNKYLVEL 507
            EKK  +C+HTL+V +    L +   +   G      D  G     G   PRT Q +  +     R  + + L  +S +KFP   P  L        A A      SQ  C+ CG    A       A  +T  P +  V V   +C +CG    AS++WR+TG+FNY+N YLVEL
Sbjct:   75 EKKDRKCLHTLVVTL---ALWQEEGMRDEGLGVGQVDVDGGRIPDG--TPRTAQKMLDKDAPACRKGLANCLNTMSVYKFPENLPFGLGRHGAITNANASITCTTSQNTCSGCGRDFPAENQHTVVATRLTEGPGMSKVNVHTNECETCGIHGLASENWRETGLFNYNNSYLVEL 244
[Close]
BLAST of mRNA_P-littoralis_Contig1140.4.1 vs. uniprot
Match: A0A6H5L2N5_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2N5_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 2.480e-9
Identity = 46/134 (34.33%), Postives = 65/134 (48.51%), Query Frame = 1 
Query:  136 GGPVLPRTPQLLAKRSPDD---YRLKVDDMLFYISRHKFPPIRPSEL----PPVTAEAGRRFKVSQRKCT-CGGTLDALEDED--AKVVTGAPNIVTVEVERRKCGSCGRPAWASDDWRKTGVFNYDNKYLVEL 507
            GG +   TP++  K    D   YR  + + L  +S +KFP   P  L        A A   +  SQ+ C+ CG    A    +  A  +T    +  V V   +C +CG    ASD+WR+TG+FNY+N YLVEL
Sbjct:   15 GGRIPDGTPRMAQKMLDKDAPAYRKGLANCLNTMSVYKFPENLPFGLGRRGATTNANASITYTTSQKACSGCGRDFPAENQHNVVATRLTEGSGMSKVNVHTNECETCGIHGLASDNWRETGLFNYNNSYLVEL 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1140.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5KPP3_9PHAE5.270e-3146.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLK4_9PHAE7.330e-2547.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2H3_ECTSI1.540e-1944.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0Y4_9PHAE2.160e-1433.14CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JPP3_9PHAE6.450e-1333.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JWX4_9PHAE8.390e-1333.14CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K6Y4_9PHAE9.650e-1232.57CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JRE3_9PHAE2.150e-1134.92CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JGH9_9PHAE9.850e-1032.00CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L2N5_9PHAE2.480e-934.33CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1140contigP-littoralis_Contig1140:4716..5784 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FR86
Preferred nameATG5
PFAMsAPG5
Model size508
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01880,ko:K08339
KEGG ReactionR03654
KEGG Pathwayko00970,ko04136,ko04137,ko04138,ko04140,ko04211,ko04213,ko04216,ko04621,ko04622,ko05131,map00970,map04136,map04137,map04138,map04140,map04211,map04213,map04216,map04621,map04622,map05131
KEGG ModuleM00359,M00360
Hectar predicted targeting categorysignal peptide
GOsGO:0000045,GO:0000272,GO:0000407,GO:0000422,GO:0000423,GO:0001101,GO:0001775,GO:0001817,GO:0001974,GO:0002165,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002697,GO:0002700,GO:0002718,GO:0002739,GO:0002791,GO:0003008,GO:0003013,GO:0003015,GO:0003018,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006995,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007423,GO:0007507,GO:0007552,GO:0007568,GO:0008015,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009653,GO:0009791,GO:0009886,GO:0009888,GO:0009892,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0010039,GO:0010040,GO:0010150,GO:0010522,GO:0010605,GO:0010623,GO:0010639,GO:0010941,GO:0010959,GO:0012501,GO:0012506,GO:0014706,GO:0015980,GO:0016020,GO:0016032,GO:0016043,GO:0016052,GO:0016236,GO:0016237,GO:0018410,GO:0019058,GO:0019079,GO:0019222,GO:0019538,GO:0019725,GO:0019882,GO:0019883,GO:0022411,GO:0022607,GO:0030097,GO:0030098,GO:0030100,GO:0030139,GO:0030154,GO:0030217,GO:0030234,GO:0030424,GO:0030435,GO:0030587,GO:0030659,GO:0030666,GO:0030670,GO:0031056,GO:0031057,GO:0031090,GO:0031288,GO:0031323,GO:0031324,GO:0031344,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032258,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033077,GO:0033365,GO:0033554,GO:0034045,GO:0034274,GO:0034613,GO:0034645,GO:0034727,GO:0034762,GO:0034765,GO:0035051,GO:0035065,GO:0035067,GO:0035069,GO:0035096,GO:0035150,GO:0035296,GO:0035973,GO:0036211,GO:0039689,GO:0039694,GO:0042110,GO:0042157,GO:0042158,GO:0042221,GO:0042311,GO:0042493,GO:0042592,GO:0042594,GO:0042692,GO:0042742,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043269,GO:0043383,GO:0043412,GO:0043562,GO:0043583,GO:0043687,GO:0043934,GO:0044042,GO:0044085,GO:0044087,GO:0044093,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044804,GO:0044805,GO:0045058,GO:0045060,GO:0045061,GO:0045321,GO:0045335,GO:0045806,GO:0046649,GO:0048366,GO:0048367,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048646,GO:0048707,GO:0048731,GO:0048738,GO:0048771,GO:0048827,GO:0048839,GO:0048840,GO:0048856,GO:0048869,GO:0050707,GO:0050708,GO:0050764,GO:0050765,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050832,GO:0050878,GO:0050880,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051051,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051279,GO:0051282,GO:0051409,GO:0051641,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0051924,GO:0055001,GO:0055002,GO:0055006,GO:0055007,GO:0055012,GO:0055013,GO:0055015,GO:0055114,GO:0060033,GO:0060047,GO:0060255,GO:0060341,GO:0060491,GO:0060537,GO:0060548,GO:0060627,GO:0061061,GO:0061709,GO:0061723,GO:0061726,GO:0061739,GO:0061912,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070255,GO:0070257,GO:0070727,GO:0070925,GO:0071496,GO:0071500,GO:0071704,GO:0071840,GO:0072359,GO:0072665,GO:0075044,GO:0075071,GO:0080090,GO:0090066,GO:0090087,GO:0090239,GO:0090241,GO:0090693,GO:0090702,GO:0097014,GO:0097458,GO:0097708,GO:0097746,GO:0097755,GO:0098542,GO:0098588,GO:0098772,GO:0098805,GO:0099120,GO:0099402,GO:0099568,GO:0120025,GO:0120032,GO:0120035,GO:0120038,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901983,GO:1901984,GO:1902017,GO:1902115,GO:1902275,GO:1902494,GO:1902617,GO:1903008,GO:1903169,GO:1903320,GO:1903321,GO:1903530,GO:1904062,GO:1905037,GO:1905268,GO:1990234,GO:2000377,GO:2000378,GO:2000618,GO:2000619,GO:2000756,GO:2000757,GO:2001251
Exons2
Evalue3.22e-05
EggNOG OGsKOG2976@1|root,KOG2976@2759|Eukaryota
EC6.1.1.14
Descriptionprocess utilizing autophagic mechanism
Cds size507
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789465.9264607-CDS-P-littoralis_Contig1140:4715..50931680789465.9264607-CDS-P-littoralis_Contig1140:4715..5093Pylaiella littoralis U1_48CDSP-littoralis_Contig1140 4716..5093 +
1680789465.938251-CDS-P-littoralis_Contig1140:5654..57831680789465.938251-CDS-P-littoralis_Contig1140:5654..5783Pylaiella littoralis U1_48CDSP-littoralis_Contig1140 5655..5783 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1140.4.1prot_P-littoralis_Contig1140.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1140 4716..5783 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1140.4.1

>prot_P-littoralis_Contig1140.4.1 ID=prot_P-littoralis_Contig1140.4.1|Name=mRNA_P-littoralis_Contig1140.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
KEKKRSRCVHTLIVAIFTGVLGRGSTVARSGTTADADDASGSASSGGPVL
PRTPQLLAKRSPDDYRLKVDDMLFYISRHKFPPIRPSELPPVTAEAGRRF
KVSQRKCTCGGTLDALEDEDAKVVTGAPNIVTVEVERRKCGSCGRPAWAS
DDWRKTGVFNYDNKYLVEL
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mRNA from alignment at P-littoralis_Contig1140:4716..5784+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1140.4.1 ID=mRNA_P-littoralis_Contig1140.4.1|Name=mRNA_P-littoralis_Contig1140.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1069bp|location=Sequence derived from alignment at P-littoralis_Contig1140:4716..5784+ (Pylaiella littoralis U1_48)
AAGGAAAAGAAGCGCTCAAGATGCGTGCACACGTTGATCGTCGCAATCTT
CACGGGCGTCTTGGGGCGGGGTTCGACCGTTGCGAGGAGCGGGACGACGG
CTGATGCAGATGATGCTTCTGGAAGTGCCTCGTCGGGTGGACCTGTGTTG
CCCCGTACTCCGCAGTTGCTCGCCAAGCGTTCCCCCGATGATTATCGTTT
GAAGGTGGATGATATGCTCTTCTACATTTCGCGTCACAAGTTTCCACCCA
TCCGCCCCTCGGAGCTGCCGCCAGTGACGGCAGAAGCGGGTAGAAGGTTC
AAAGTATCCCAACGCAAGTGCACCTGTGGGGGCACTCTGGATGCTCTCGA
GGACGAGGATGCAAAGGTCGTCACTGGGGTGAGTGGTGAAAGTATTGTGG
GCAGCGCAGAACAAGCGTAATTCCGTGAGTCTGTGAGAATAGAGAGTAGG
ACGCGGCATGGCGATAACCGGGTATCCCTTGCAGCCTCTCCAGGGACGTG
AACAGCCTGTTGCGACAATTCTTTAGGAGTCCTGGCAGTCTGCCTGTGAG
GTTCTCACGTGTAAATATCTTGGTTTGCTCACAGCTGCCAATTTTTCGTC
TGGTTCTCCGAGAAAAACCACTGGTTCCAATTTCGAACCCGTGCCGTCCG
CGCAGAAAAGCACAAAATGGCCTGGCCCCAGAAGGGTTCACCCGCTGGCC
CCGACGTTCGTAACCATGGGGACGGTGATGACGCTCCCCAGCAATATAAT
GCAAAACACATTTGGATGCGATTGTAATGTCGCAGCTCGCTATTGTCTAT
GAACCCATGGAGGACTGAATACCGAGAAGGGGCATCCTCTTCCCATAGTC
GTGCATGGGATTCTAAAGACTTATCCTGGCGTGGTCTTAACACACTTGTC
GCCCCTCTCTAACCACCGACCTCACTCTATTTCTTATAGGCACCGAATAT
CGTGACAGTGGAAGTGGAGCGTCGGAAGTGTGGGTCATGTGGGAGGCCCG
CGTGGGCAAGTGACGACTGGCGAAAGACGGGGGTGTTCAACTACGACAAC
AAGTACCTCGTGGAGCTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1140:4716..5784+

>mRNA_P-littoralis_Contig1140.4.1 ID=mRNA_P-littoralis_Contig1140.4.1|Name=mRNA_P-littoralis_Contig1140.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig1140:4716..5784+ (Pylaiella littoralis U1_48)
AAGGAAAAGAAGCGCTCAAGATGCGTGCACACGTTGATCGTCGCAATCTT
CACGGGCGTCTTGGGGCGGGGTTCGACCGTTGCGAGGAGCGGGACGACGG
CTGATGCAGATGATGCTTCTGGAAGTGCCTCGTCGGGTGGACCTGTGTTG
CCCCGTACTCCGCAGTTGCTCGCCAAGCGTTCCCCCGATGATTATCGTTT
GAAGGTGGATGATATGCTCTTCTACATTTCGCGTCACAAGTTTCCACCCA
TCCGCCCCTCGGAGCTGCCGCCAGTGACGGCAGAAGCGGGTAGAAGGTTC
AAAGTATCCCAACGCAAGTGCACCTGTGGGGGCACTCTGGATGCTCTCGA
GGACGAGGATGCAAAGGTCGTCACTGGGGCACCGAATATCGTGACAGTGG
AAGTGGAGCGTCGGAAGTGTGGGTCATGTGGGAGGCCCGCGTGGGCAAGT
GACGACTGGCGAAAGACGGGGGTGTTCAACTACGACAACAAGTACCTCGT
GGAGCTA
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