mRNA_P-littoralis_Contig1140.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1140.3.1
Unique NamemRNA_P-littoralis_Contig1140.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1140.3.1 vs. uniprot
Match: D7FR12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR12_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 2.180e-58
Identity = 104/203 (51.23%), Postives = 136/203 (67.00%), Query Frame = 1 
Query:   70 GSADEARQSIFLLPPASGDKSTTASVRLGNADNRVITSVNEERNTSSCSRQQCFGQRAGFQSQRQTSANNGGVPSLIGGVCRHGAAASLHIMKKTGKHATKVRIAGEQTFDGVKMLAEKAKAAGLVTQPEFDDVMAVIVGADRNGVWPLYETERRHFAIYDNRKRTTEQDWGCVKNDEVSPGSAPRRLTPERHLMCRVRLRRD 678
            G   + RQ +F LP  +GD+STT +VRLGNADN VITSVN ER TSSCSR QC G RAG  +Q+QT+ ++GGV S IGG+C+H  AA  H+ KKT K A +V+  G   +D  K     AK+ G ++  E   +M ++  A+ +GVWP+YETE  HF + D+R RT+E D+ CVK D V PG + RRLTP ++ MCRV LR D
Sbjct:   54 GGEAKQRQIVFKLPRGNGDQSTTVAVRLGNADNWVITSVNPERQTSSCSRTQCQGLRAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVKGDGWD-WDAAKEHVATAKSDGHLSVVEHTVIMTMVERAEGSGVWPVYETEPNHFVVRDDRTRTSEHDYACVKYDTVEPGKSSRRLTPPKNFMCRVSLRID 255
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BLAST of mRNA_P-littoralis_Contig1140.3.1 vs. uniprot
Match: D8LSV9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSV9_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.770e-56
Identity = 100/197 (50.76%), Postives = 132/197 (67.01%), Query Frame = 1 
Query:   70 GSADEARQSIFLLPPASGDKSTTASVRLGNADNRVITSVNEERNTSSCSRQQCFGQRAGFQSQRQTSANNGGVPSLIGGVCRHGAAASLHIMKKTGKHATKVRIAGEQTFDGVKMLAEKAKAAGLVTQPEFDDVMAVIVGADRNGVWPLYETERRHFAIYDNRKRTTEQDWGCVKNDEVSPGSAPRRLTPERHLMCR 660
            G   + RQ +F LP  +GD+STT +VRLGNADN VITSVN ER TSSCSR QC G RAG  +Q+QT+ ++GGV S IGG+C+H  AA  H+ KKT K A +V+  G   +D  K     AK+ G ++  E   +M ++  A+ +GVWP+YETE  HF + D+R RT+E D+ CVK D V PG + RRLTP ++ MCR
Sbjct:   90 GGEAKQRQRVFKLPRGNGDQSTTVAVRLGNADNWVITSVNPERQTSSCSRTQCQGLRAGLVAQQQTAGSHGGVASAIGGLCKHAKAALEHMRKKTVKDAREVKGDGWD-WDAAKEHVATAKSDGHLSVVEHTAIMTMVERAEGSGVWPVYETEPNHFVVRDDRTRTSEHDYACVKYDTVEPGKSSRRLTPPKNFMCR 285
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BLAST of mRNA_P-littoralis_Contig1140.3.1 vs. uniprot
Match: A0A6H5KPP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPP3_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 6.470e-47
Identity = 95/199 (47.74%), Postives = 126/199 (63.32%), Query Frame = 1 
Query:   88 RQSIFLLPPASGDKSTTASVRLGNADNRVITSVNEERNTSSCSRQQCFGQRAGFQSQRQTSANNGGVPSLIGGVCRHGAAASLHIMKKTGKHATKVRIAGEQTFD--GVKMLAEKAKAAGLVTQPEFDDVMAVIVGADRNGVWPLYETERRHFAIYDNRKRTTEQDWGCVKNDEVSPGSAPRRLTPERHLMCRVRLRRD 678
            R  ++ LP  +GD+STT +VR GNA   V T VN +R TSSCSR +C G  AGF SQ++T  ++GGV S +GG+C+H A A  H+  KT K AT V + G  + D    K L   AK    +T  E +DVM+++ GA+R+GVWP+ E ER  + + D R RTTE DWG VK D+VS G A RR++  RH MC+V L  D
Sbjct:   45 RGKVYQLPWRTGDESTTVAVRAGNAGVYVATCVNRQRKTSSCSRTECQGATAGFVSQQRTVGSHGGVASAVGGLCQHAALALEHMAAKTMKRATSV-LGGVASTDYAAAKELVTAAKLGSHLTAEECNDVMSIVEGAERSGVWPVVEVERHQYMVLDMRSRTTELDWGSVKFDQVSEGEASRRMSSSRHFMCKVFLDSD 242
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BLAST of mRNA_P-littoralis_Contig1140.3.1 vs. uniprot
Match: D7G2H3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H3_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 4.960e-21
Identity = 50/106 (47.17%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:  352 TGKHATKVRIAGEQTFD--GVKMLAEKAKAAGLVTQPEFDDVMAVIVGADRNGVWPLYETERRHFAIYDNRKRTTEQDWGCVKNDEVSPGSAPRRLTPERHLMCRV 663
            T K AT V + G  + D    K L   AK    +T  E +DVM+++ GA+R+GVWP+ ETER  + + D R RTTE DWG VK D+VS G A RR+T  RH MC+ 
Sbjct:    5 TMKRATSV-LGGVSSRDYAAAKELVTAAKLGSHLTAEECNDVMSIVEGAERSGVWPVVETERHQYMVLDMRSRTTELDWGSVKFDQVSEGEASRRMTSSRHFMCKA 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1140.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FR12_ECTSI2.180e-5851.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSV9_ECTSI1.770e-5650.76Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KPP3_9PHAE6.470e-4747.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2H3_ECTSI4.960e-2147.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1140contigP-littoralis_Contig1140:3230..4314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FR86
Preferred nameATG5
PFAMsAPG5
Model size678
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01880,ko:K08339
KEGG ReactionR03654
KEGG Pathwayko00970,ko04136,ko04137,ko04138,ko04140,ko04211,ko04213,ko04216,ko04621,ko04622,ko05131,map00970,map04136,map04137,map04138,map04140,map04211,map04213,map04216,map04621,map04622,map05131
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000272,GO:0000407,GO:0000422,GO:0000423,GO:0001101,GO:0001775,GO:0001817,GO:0001974,GO:0002165,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002697,GO:0002700,GO:0002718,GO:0002739,GO:0002791,GO:0003008,GO:0003013,GO:0003015,GO:0003018,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005776,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006464,GO:0006497,GO:0006501,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006995,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007423,GO:0007507,GO:0007552,GO:0007568,GO:0008015,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009251,GO:0009267,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009653,GO:0009791,GO:0009886,GO:0009888,GO:0009892,GO:0009987,GO:0009991,GO:0010035,GO:0010038,GO:0010039,GO:0010040,GO:0010150,GO:0010522,GO:0010605,GO:0010623,GO:0010639,GO:0010941,GO:0010959,GO:0012501,GO:0012506,GO:0014706,GO:0015980,GO:0016020,GO:0016032,GO:0016043,GO:0016052,GO:0016236,GO:0016237,GO:0018410,GO:0019058,GO:0019079,GO:0019222,GO:0019538,GO:0019725,GO:0019882,GO:0019883,GO:0022411,GO:0022607,GO:0030097,GO:0030098,GO:0030100,GO:0030139,GO:0030154,GO:0030217,GO:0030234,GO:0030424,GO:0030435,GO:0030587,GO:0030659,GO:0030666,GO:0030670,GO:0031056,GO:0031057,GO:0031090,GO:0031288,GO:0031323,GO:0031324,GO:0031344,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031982,GO:0032258,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033077,GO:0033365,GO:0033554,GO:0034045,GO:0034274,GO:0034613,GO:0034645,GO:0034727,GO:0034762,GO:0034765,GO:0035051,GO:0035065,GO:0035067,GO:0035069,GO:0035096,GO:0035150,GO:0035296,GO:0035973,GO:0036211,GO:0039689,GO:0039694,GO:0042110,GO:0042157,GO:0042158,GO:0042221,GO:0042311,GO:0042493,GO:0042592,GO:0042594,GO:0042692,GO:0042742,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043269,GO:0043383,GO:0043412,GO:0043562,GO:0043583,GO:0043687,GO:0043934,GO:0044042,GO:0044085,GO:0044087,GO:0044093,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044275,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044804,GO:0044805,GO:0045058,GO:0045060,GO:0045061,GO:0045321,GO:0045335,GO:0045806,GO:0046649,GO:0048366,GO:0048367,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048646,GO:0048707,GO:0048731,GO:0048738,GO:0048771,GO:0048827,GO:0048839,GO:0048840,GO:0048856,GO:0048869,GO:0050707,GO:0050708,GO:0050764,GO:0050765,GO:0050776,GO:0050789,GO:0050790,GO:0050794,GO:0050832,GO:0050878,GO:0050880,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051051,GO:0051128,GO:0051129,GO:0051146,GO:0051171,GO:0051172,GO:0051179,GO:0051223,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051279,GO:0051282,GO:0051409,GO:0051641,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0051924,GO:0055001,GO:0055002,GO:0055006,GO:0055007,GO:0055012,GO:0055013,GO:0055015,GO:0055114,GO:0060033,GO:0060047,GO:0060255,GO:0060341,GO:0060491,GO:0060537,GO:0060548,GO:0060627,GO:0061061,GO:0061709,GO:0061723,GO:0061726,GO:0061739,GO:0061912,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070255,GO:0070257,GO:0070727,GO:0070925,GO:0071496,GO:0071500,GO:0071704,GO:0071840,GO:0072359,GO:0072665,GO:0075044,GO:0075071,GO:0080090,GO:0090066,GO:0090087,GO:0090239,GO:0090241,GO:0090693,GO:0090702,GO:0097014,GO:0097458,GO:0097708,GO:0097746,GO:0097755,GO:0098542,GO:0098588,GO:0098772,GO:0098805,GO:0099120,GO:0099402,GO:0099568,GO:0120025,GO:0120032,GO:0120035,GO:0120038,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901983,GO:1901984,GO:1902017,GO:1902115,GO:1902275,GO:1902494,GO:1902617,GO:1903008,GO:1903169,GO:1903320,GO:1903321,GO:1903530,GO:1904062,GO:1905037,GO:1905268,GO:1990234,GO:2000377,GO:2000378,GO:2000618,GO:2000619,GO:2000756,GO:2000757,GO:2001251
Exons2
Evalue1.49e-16
EggNOG OGsKOG2976@1|root,KOG2976@2759|Eukaryota
EC6.1.1.14
Descriptionprocess utilizing autophagic mechanism
Cds size678
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789465.880088-CDS-P-littoralis_Contig1140:3229..34621680789465.880088-CDS-P-littoralis_Contig1140:3229..3462Pylaiella littoralis U1_48CDSP-littoralis_Contig1140 3230..3462 +
1680789465.8942797-CDS-P-littoralis_Contig1140:3869..43141680789465.8942797-CDS-P-littoralis_Contig1140:3869..4314Pylaiella littoralis U1_48CDSP-littoralis_Contig1140 3870..4314 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1140.3.1prot_P-littoralis_Contig1140.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1140 3230..4314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1140.3.1

>prot_P-littoralis_Contig1140.3.1 ID=prot_P-littoralis_Contig1140.3.1|Name=mRNA_P-littoralis_Contig1140.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=226bp
REGRGGGRAPGVGQGRGHPGRTFGSADEARQSIFLLPPASGDKSTTASVR
LGNADNRVITSVNEERNTSSCSRQQCFGQRAGFQSQRQTSANNGGVPSLI
GGVCRHGAAASLHIMKKTGKHATKVRIAGEQTFDGVKMLAEKAKAAGLVT
QPEFDDVMAVIVGADRNGVWPLYETERRHFAIYDNRKRTTEQDWGCVKND
EVSPGSAPRRLTPERHLMCRVRLRRD
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mRNA from alignment at P-littoralis_Contig1140:3230..4314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1140.3.1 ID=mRNA_P-littoralis_Contig1140.3.1|Name=mRNA_P-littoralis_Contig1140.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1085bp|location=Sequence derived from alignment at P-littoralis_Contig1140:3230..4314+ (Pylaiella littoralis U1_48)
AGGGAGGGGAGGGGGGGGGGGCGTGCACCAGGGGTAGGGCAAGGGCGAGG
ACACCCAGGGCGAACGTTTGGGAGTGCAGACGAGGCGAGGCAAAGCATTT
TCTTGTTGCCGCCGGCTAGCGGCGACAAAAGCACTACAGCTTCTGTGCGG
CTCGGAAATGCTGACAACCGAGTGATCACATCGGTCAACGAAGAGCGAAA
CACGTCCAGCTGCTCGAGACAACAGTGTTTTGGGTGAGGCGGGTATTACC
CTATAGTGCTGTGTGCGTGTGAAAGATACAACAAGTTTAGGTATCAACTT
GTACGCTGCAAGAGATCCCCATTGTACCTCATGTTTCGTTACCTCAAGTG
CCGTTCCTCGTGAGTCGCGAATAGTGTGTTGAAGTGTTCATATTCAAACG
TTCATGAGCCCAGGACACCTCGTCTTGGGGTTTGACCCCTACACGCCACC
ATCGACCACGTTGCGTAGCCGGCAGAACACGTACTTGTGCCATCTGATGT
CACAAAATCACAAACTGAAACAACACTAGAACGAAACAATGTGGAAAAAA
TCGTTCCGTGCCAAGTCTAGGTGAAATTCAGCGGTGGTGGTCCGTTGTTT
GTTCCCTTCCGCTCGAACGGCATCTCTTTTCGTTGCGCAGGCAGAGGGCG
GGATTCCAATCTCAGCGACAGACGTCGGCGAACAACGGTGGGGTGCCCAG
CTTGATCGGAGGCGTGTGTCGACACGGCGCTGCCGCGTCACTCCACATCA
TGAAGAAAACAGGGAAACACGCTACCAAGGTGAGGATTGCGGGAGAGCAA
ACCTTTGACGGAGTTAAGATGCTGGCGGAAAAAGCGAAGGCGGCTGGTCT
AGTGACTCAACCGGAGTTCGATGATGTGATGGCAGTCATTGTGGGGGCAG
ACAGGAATGGCGTGTGGCCGCTGTACGAGACGGAACGTCGTCATTTCGCC
ATCTACGACAACCGGAAACGAACGACCGAGCAGGACTGGGGATGTGTGAA
GAATGACGAAGTCTCACCCGGGAGTGCGCCCCGAAGATTGACTCCTGAGC
GGCACCTCATGTGCAGGGTAAGGCTACGCAGAGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1140:3230..4314+

>mRNA_P-littoralis_Contig1140.3.1 ID=mRNA_P-littoralis_Contig1140.3.1|Name=mRNA_P-littoralis_Contig1140.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=678bp|location=Sequence derived from alignment at P-littoralis_Contig1140:3230..4314+ (Pylaiella littoralis U1_48)
AGGGAGGGGAGGGGGGGGGGGCGTGCACCAGGGGTAGGGCAAGGGCGAGG
ACACCCAGGGCGAACGTTTGGGAGTGCAGACGAGGCGAGGCAAAGCATTT
TCTTGTTGCCGCCGGCTAGCGGCGACAAAAGCACTACAGCTTCTGTGCGG
CTCGGAAATGCTGACAACCGAGTGATCACATCGGTCAACGAAGAGCGAAA
CACGTCCAGCTGCTCGAGACAACAGTGTTTTGGGCAGAGGGCGGGATTCC
AATCTCAGCGACAGACGTCGGCGAACAACGGTGGGGTGCCCAGCTTGATC
GGAGGCGTGTGTCGACACGGCGCTGCCGCGTCACTCCACATCATGAAGAA
AACAGGGAAACACGCTACCAAGGTGAGGATTGCGGGAGAGCAAACCTTTG
ACGGAGTTAAGATGCTGGCGGAAAAAGCGAAGGCGGCTGGTCTAGTGACT
CAACCGGAGTTCGATGATGTGATGGCAGTCATTGTGGGGGCAGACAGGAA
TGGCGTGTGGCCGCTGTACGAGACGGAACGTCGTCATTTCGCCATCTACG
ACAACCGGAAACGAACGACCGAGCAGGACTGGGGATGTGTGAAGAATGAC
GAAGTCTCACCCGGGAGTGCGCCCCGAAGATTGACTCCTGAGCGGCACCT
CATGTGCAGGGTAAGGCTACGCAGAGAT
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