mRNA_P-littoralis_Contig114.84.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig114.84.1
Unique NamemRNA_P-littoralis_Contig114.84.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig114.84.1 vs. uniprot
Match: A0A6H5JXZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ6_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.530e-42
Identity = 81/126 (64.29%), Postives = 97/126 (76.98%), Query Frame = 1
Query:    1 VKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 378
             KAKWN P ANW+  SGNNQPW++FCQGD+D +++G AI+KYPELDQVCN LLPED QREDDGTG   G  GGAERRA+AKREG RL+  NR G K+ KK  R QSVA+AT  A+ +A+  + PLL
Sbjct:  134 AKAKWNTPIANWKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGEGDGCTGGAERRAAAKREGARLYEQNRRGTKQ-KKQGRRQSVAEATSVAMKTALLDIEPLL 258          
BLAST of mRNA_P-littoralis_Contig114.84.1 vs. uniprot
Match: D7FJ39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ39_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 4.200e-39
Identity = 78/126 (61.90%), Postives = 95/126 (75.40%), Query Frame = 1
Query:    1 VKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 378
             KAKWNQP+A+W+  SGNNQPW++FCQG +D +++G AI+KYPEL+QVCN LLPE  QREDDGTG      GGA+RRA+AKREG RLH  NR GKK+  K    QSVA+AT  A+ +AI  M PLL
Sbjct:  271 AKAKWNQPYADWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGIVGTGGADRRAAAKREGARLHEQNRRGKKQKNKGV-GQSVAEATSAAMKTAIKDMEPLL 395          
BLAST of mRNA_P-littoralis_Contig114.84.1 vs. uniprot
Match: A0A6H5KNY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY9_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.850e-39
Identity = 79/126 (62.70%), Postives = 96/126 (76.19%), Query Frame = 1
Query:    1 VKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 378
             KAKWN P+ANW+  SGNNQPW++FCQGD+D +++G AI+KYPELDQVCN LLPED QREDDGTG   G  GGAER A+AKREG RL+  NR G  + KK  R QSVA+AT  A+ +A+  + PLL
Sbjct:  298 AKAKWNTPNANWKRESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGDGNGCTGGAERLAAAKREGARLYEQNRRGTMQKKKGGR-QSVAEATSVAMKTALLEVEPLL 422          
BLAST of mRNA_P-littoralis_Contig114.84.1 vs. uniprot
Match: A0A6H5JZX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX9_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 2.870e-38
Identity = 78/126 (61.90%), Postives = 94/126 (74.60%), Query Frame = 1
Query:    1 VKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 378
             KAKWN P+ANW+  SGNNQPW++FCQGD+D +++G AI+KYPELDQVCN  LP D QREDDGTG   G  GGAERRASAKREG RL   NR G K+ KK    Q+VA+AT  A+ +A+  + PLL
Sbjct:  292 AKAKWNTPNANWKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNPLPVDAQREDDGTGEGDGCTGGAERRASAKREGARLDEQNRRGTKQKKKGG-GQNVAEATSVAMKTALLDIEPLL 416          
BLAST of mRNA_P-littoralis_Contig114.84.1 vs. uniprot
Match: A0A6H5KFU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU0_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 7.320e-37
Identity = 78/126 (61.90%), Postives = 93/126 (73.81%), Query Frame = 1
Query:    1 VKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 378
             KAKWN P+ANW+  SGNNQPW++F QGD+D +++G AI+KYPELDQVCN  LP D QREDDGTG   G  GGAERRASAKREG RL   NR G K+ KK    QSVA+AT  A+ +A+  + PLL
Sbjct:  454 AKAKWNTPNANWKSESGNNQPWLSFAQGDTDTYILGCAIEKYPELDQVCNNPLPVDAQREDDGTGEGDGCTGGAERRASAKREGARLDEQNRRGTKQKKKGG-GQSVAEATSVAMKTALLDIEPLL 578          
BLAST of mRNA_P-littoralis_Contig114.84.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 4.260e-36
Identity = 76/126 (60.32%), Postives = 94/126 (74.60%), Query Frame = 1
Query:    1 VKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 378
             KAKWNQP+ANW+  SGNNQPW++FCQG +D +++G AI+KYPEL+QVCN LLPE  QREDDGTG      GGA+RRA+AKREG RL+  NR GKK   K    QSVA+AT  A+ +A+  + PLL
Sbjct:  506 AKAKWNQPYANWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGIVCTGGADRRAAAKREGARLNEQNRRGKKPKNKGV-GQSVAEATSAAMKTALKDIEPLL 630          
BLAST of mRNA_P-littoralis_Contig114.84.1 vs. uniprot
Match: A0A6H5KNM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM0_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 7.850e-36
Identity = 76/116 (65.52%), Postives = 92/116 (79.31%), Query Frame = 1
Query:    1 VKAKWNQPHANWRGT-SGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAV 345
             KAKWN P+ANW+ + SGNNQPW++FCQGD+D +++G AI+KYPELDQVCN LLPED QREDDGTG   G  GGAERRA+AKREG RL+  NR G K+ K+  R QSVA+AT  A+
Sbjct:  828 AKAKWNTPNANWKKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGEGDGCTGGAERRAAAKREGARLYEQNRRGTKQKKEGGR-QSVAEATSVAM 942          
BLAST of mRNA_P-littoralis_Contig114.84.1 vs. uniprot
Match: D7FU69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU69_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 4.700e-33
Identity = 64/96 (66.67%), Postives = 76/96 (79.17%), Query Frame = 1
Query:    1 VKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKK 288
             KAKWNQP+ANW+  SGNNQPW++FCQG +D +++G AI+KYPEL+QVCN LLPE  QREDD TG      GGA+RRA+AKREG RLH  NR GKK
Sbjct:  394 AKAKWNQPYANWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDWTGEGIVGTGGADRRAAAKREGARLHEQNRRGKK 489          
BLAST of mRNA_P-littoralis_Contig114.84.1 vs. uniprot
Match: A0A6H5JSN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN7_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.830e-29
Identity = 68/126 (53.97%), Postives = 83/126 (65.87%), Query Frame = 1
Query:    1 VKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 378
             +A WN P+ANW   SGNNQPWV+F QGD+D +++G A +KYPELDQVCN LLPED QREDDGTG      GGAERR +AKREG RL   N             +SVA+A   A+ +A+  + PLL
Sbjct:  429 ARANWNTPYANWTSESGNNQPWVSFSQGDTDTYILGCAFEKYPELDQVCNNLLPEDAQREDDGTGEGDACTGGAERRTAAKREGARLDEQNXXXXXXXXXXX-GKSVAEAMSVAMKTALLDIEPLL 553          
BLAST of mRNA_P-littoralis_Contig114.84.1 vs. uniprot
Match: A0A6H5KQ52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ52_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.020e-28
Identity = 64/126 (50.79%), Postives = 81/126 (64.29%), Query Frame = 1
Query:    1 VKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCNALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKKDERAQSVADATEKAVSSAIAGMAPLL 378
             KAKWN P+ANW+   GNNQPW++FCQGD+D +++G A++KYPELDQVCN LLPED QREDD TG   G                  +  NR G K+ KK  R QSVA+AT  A+ +A+  + PLL
Sbjct:  168 AKAKWNTPNANWKSEPGNNQPWLSFCQGDTDTYILGCAVEKYPELDQVCNNLLPEDAQREDDRTGEGDG--------------WREAYEQNRRGTKQKKKGGR-QSVAEATSVAMKTALLDIEPLL 278          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig114.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5JXZ6_9PHAE2.530e-4264.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ39_ECTSI4.200e-3961.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNY9_9PHAE4.850e-3962.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZX9_9PHAE2.870e-3861.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFU0_9PHAE7.320e-3761.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKV3_9PHAE4.260e-3660.32Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KNM0_9PHAE7.850e-3665.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU69_ECTSI4.700e-3366.67Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JSN7_9PHAE1.830e-2953.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ52_9PHAE1.020e-2850.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig114contigP-littoralis_Contig114:531805..533522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIC6
Model size487
Max annot lvl2880.D7FIC6|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.5e-39
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Cds size486
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789465.7690396-CDS-P-littoralis_Contig114:531804..5318861680789465.7690396-CDS-P-littoralis_Contig114:531804..531886Pylaiella littoralis U1_48CDSP-littoralis_Contig114 531805..531886 +
1680789465.7813604-CDS-P-littoralis_Contig114:533118..5335221680789465.7813604-CDS-P-littoralis_Contig114:533118..533522Pylaiella littoralis U1_48CDSP-littoralis_Contig114 533119..533522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig114.84.1prot_P-littoralis_Contig114.84.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig114 531805..533522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig114.84.1

>prot_P-littoralis_Contig114.84.1 ID=prot_P-littoralis_Contig114.84.1|Name=mRNA_P-littoralis_Contig114.84.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=162bp
VKAKWNQPHANWRGTSGNNQPWVNFCQGDSDIFLVGEAIKKYPELDQVCN
ALLPEDVQREDDGTGAAAGEAGGAERRASAKREGERLHGMNRAGKKKAKK
DERAQSVADATEKAVSSAIAGMAPLLASMKPDTANGRPQTDDPERQVAEI
VLADECMTAHEN
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mRNA from alignment at P-littoralis_Contig114:531805..533522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig114.84.1 ID=mRNA_P-littoralis_Contig114.84.1|Name=mRNA_P-littoralis_Contig114.84.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1718bp|location=Sequence derived from alignment at P-littoralis_Contig114:531805..533522+ (Pylaiella littoralis U1_48)
GTGAAGGCGAAGTGGAATCAGCCCCACGCAAACTGGAGGGGCACGTCTGG CAACAATCAGCCTTGGGTGAACTTCTGCCAAGGTAAGAATGCCGTTCGAG AGTGGGAGGGAAACTCACATGCGTAGATTAAACGTTGTAAAGGGGCCTTC GGCATAAACTGTTCAGCGTGTCAATTTTCTTGTCGGCCGTAGGCGAGACG CTGCCTTACCGGTCTTGTTTTAGGTGATTCGATTCTGCACCGGTTCGTTT GTGTTTCTCATTTCACCTTGTACTTCGGGTGCAAGGGAACAAGTTGGGCT CACCATCCGGGTTTAGACGATCGTCAGGTCAACAAACGTTTTTTTGCAAG GGTGTACATAGACTGCTGCCGGGCCGATTGTTCCCGGATTTTGACGGAAG TGCTGGTGATTTCGGCCCGTCCCGGCAAAAACATAAATAACCGGCCCGTC CCGGCCCCCGGAAAGAAAATAAAAAAACATTATACCCGCCCGTCCCGGCA CATGAGGAAAAAAAAAACGGCCCGGCCCGCGCGTGAAAAAAAAACCTCCA TTCCCGGCACGTGAAAAAAAAACGTCCGCCCGGCCCGGCAAGTGGACACA AAATTATCGCTCTATCCCGGCCATGTGAATACAAAAACTACAGAATACTC GCGGTAAAGGCACAATGCAAAAAACAACAATTTGCGTGCGATTGGTCACA CCCTCGTCGTATCCAGTATACACTCCGCAAATGTCCCGGTGCTGAAAATG AAAACTACCGGCCCGTCCCGGCACGTGAAAGCAAAAACTACTGGCTCGTC CCGGCACGTGAAAACAAAAACAACCGGCCCGGCCCGGCACGTGAAAAGAA AAAATCGGCTCGGCCCGGGTGGAATATTCCCGGCAAAACTACCGTCCCGG CAAGAATTAAAACCAAGTTTTGGCACTCCGGCGCTACCGTTTTTTTTTTT TGTCGTCCACCCGAATTCTCCTCCCGGCCCGGCAAATTCCAATTTTAGCA GGCCATGTACACCCTTGCTTTTTTGTTCGCCTTCCTCGTGCGGTGCTCGC CAATGACCTCGTTTCCCCTCACGATTAATTCTGTGAGCTTAAACCCCCCT TCATCAGCATTCGACCTCCTGACCTAGCTGTAACATCTAATCGAGGTTAC AGACTAAACAACCGGGGCGGCTCTGGGTGCATTTGAATCTTGGAAAATTT CAGCACATGTAGACGTACATGGGGTGAGGCGTAGTTCTGACGAATAGCCT GTGCGCTATGCTTGGCCCCTGCTGCCTGCCCCCCCTCCCCCCCCTCCCCG CTTTGACCGTCCAGGCGATTCCGACATTTTCCTCGTCGGTGAAGCTATTA AAAAGTACCCCGAATTAGACCAGGTGTGCAACGCGCTATTACCAGAAGAC GTCCAGCGAGAAGACGACGGGACCGGAGCAGCAGCTGGGGAGGCGGGCGG CGCGGAACGCAGGGCGTCAGCCAAGCGCGAGGGCGAGCGGCTACACGGTA TGAACCGTGCCGGCAAGAAGAAGGCTAAAAAGGACGAGAGGGCGCAGAGC GTGGCCGACGCTACGGAGAAGGCCGTGAGTTCGGCCATTGCGGGGATGGC ACCGTTGCTGGCATCGATGAAGCCGGACACCGCAAACGGGCGTCCCCAAA CTGATGATCCGGAGCGCCAGGTTGCAGAAATCGTCCTCGCCGACGAATGC ATGACCGCCCATGAAAAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig114:531805..533522+

>mRNA_P-littoralis_Contig114.84.1 ID=mRNA_P-littoralis_Contig114.84.1|Name=mRNA_P-littoralis_Contig114.84.1|organism=Pylaiella littoralis U1_48|type=CDS|length=486bp|location=Sequence derived from alignment at P-littoralis_Contig114:531805..533522+ (Pylaiella littoralis U1_48)
GTGAAGGCGAAGTGGAATCAGCCCCACGCAAACTGGAGGGGCACGTCTGG
CAACAATCAGCCTTGGGTGAACTTCTGCCAAGGCGATTCCGACATTTTCC
TCGTCGGTGAAGCTATTAAAAAGTACCCCGAATTAGACCAGGTGTGCAAC
GCGCTATTACCAGAAGACGTCCAGCGAGAAGACGACGGGACCGGAGCAGC
AGCTGGGGAGGCGGGCGGCGCGGAACGCAGGGCGTCAGCCAAGCGCGAGG
GCGAGCGGCTACACGGTATGAACCGTGCCGGCAAGAAGAAGGCTAAAAAG
GACGAGAGGGCGCAGAGCGTGGCCGACGCTACGGAGAAGGCCGTGAGTTC
GGCCATTGCGGGGATGGCACCGTTGCTGGCATCGATGAAGCCGGACACCG
CAAACGGGCGTCCCCAAACTGATGATCCGGAGCGCCAGGTTGCAGAAATC
GTCCTCGCCGACGAATGCATGACCGCCCATGAAAAT
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