mRNA_P-littoralis_Contig114.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig114.36.1
Unique NamemRNA_P-littoralis_Contig114.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig114.36.1 vs. uniprot
Match: D7FXM5_ECTSI (SET domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXM5_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 2.750e-56
Identity = 94/107 (87.85%), Postives = 99/107 (92.52%), Query Frame = 1 
Query:  166 EEAIRNLQSAYVMLAPSSLEGVGVFAVRDVAEGVEVMRWDWHKYASVFIAEEELQRRVPLEVFNQLRRIWHVDKRRQVATPLDFTSTLSYINFLNHSDQPNLSFRYS 486
            EEAI NLQSAYV LAPSSLEGVGVFA+RD+AEGVEVMRWDWHKYASVFI  EEL+ RVP EVF+QLRRIWHVD+  QVATPLDFTSTLSYINFLNHSDQPNLSFRYS
Sbjct:   16 EEAISNLQSAYVRLAPSSLEGVGVFAMRDIAEGVEVMRWDWHKYASVFIPGEELRERVPKEVFDQLRRIWHVDQHGQVATPLDFTSTLSYINFLNHSDQPNLSFRYS 122
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BLAST of mRNA_P-littoralis_Contig114.36.1 vs. uniprot
Match: A0A0G0X7W0_9BACT (SET domain-containing protein n=4 Tax=Microgenomates group TaxID=1794810 RepID=A0A0G0X7W0_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 1.690e-6
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 1 
Query:  166 EEAIRNLQSAYVMLAPSSLEGVGVFAVRDVAEGVEVMRWDWHKYASVFIAEEELQRRVPLEVFNQLRRIWHVDKRRQVATPLDFTSTLSYINFLNHSDQPNLS 474
            ++ I  LQ  Y  L PSS+ GVGVFA+RD+  G++         A  F  +EELQ   P EV   +      DK   V  P +  + L+   ++NHSD PNL+
Sbjct:    5 QQLIDRLQHTYCRLQPSSIHGVGVFAIRDIPAGIDPFYGSGDPDAERF-TKEELQDLDP-EVLRLIDDFLVFDKDGSVEIPEEGINGLTMAFYVNHSDNPNLT 105
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BLAST of mRNA_P-littoralis_Contig114.36.1 vs. uniprot
Match: A0A2H0UWR1_9BACT (SET domain-containing protein n=4 Tax=Bacteria candidate phyla TaxID=1783234 RepID=A0A2H0UWR1_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.720e-5
Identity = 32/105 (30.48%), Postives = 55/105 (52.38%), Query Frame = 1 
Query:  166 EEAIRNLQSAYVMLAPSSLEGVGVFAVRDVAEGVEVM----RWDWHKYASVFIAEEELQRRVPLEVFNQLRRIWHVDKRRQVATPLDFTSTLSYINFLNHSDQPN 468
            ++ I  L+  Y  L PS +EGVGVFA+RD+ EG  +     R  W K+ +     +EL   + L +   +   +  D++  +  P +  +++    FLNHS++PN
Sbjct:    8 KKIIGRLRKTYCRLRPSKIEGVGVFAIRDIPEGASIFCGADRQRWFKFTN-----KELDN-LDLGIKKMIDDFFPTDEKDYILAPQNGLNSMDISFFLNHSNKPN 106
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BLAST of mRNA_P-littoralis_Contig114.36.1 vs. uniprot
Match: UPI001986588C (SET domain-containing protein n=1 Tax=Aquabacterium sp. TaxID=1872578 RepID=UPI001986588C)

HSP 1 Score: 53.1 bits (126), Expect = 3.200e-5
Identity = 31/95 (32.63%), Postives = 49/95 (51.58%), Query Frame = 1 
Query:  190 SAYVMLAPSSLEGVGVFAVRDVAEGVEVMRWDWHKYASVFIAEEELQ-RRVPLEVFNQLRRIWHVDKRRQVATPLDFTSTLSYINFLNHSDQPNL 471
            + YV++ PS +EG+GVFA+RD+ +G   +  D H     +I    ++   +PL    QL   + +        P      +  +NFLNHSDQPN+
Sbjct:   13 NTYVIIRPSPVEGIGVFAIRDIPKGCRNIFTDPHPDKDQWITIPRIEIEELPLHA-RQLVETYCLYDEANYFVPEHGFKKMDLVNFLNHSDQPNV 106
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BLAST of mRNA_P-littoralis_Contig114.36.1 vs. uniprot
Match: A0A7Y5D1H0_9BACT (SET domain-containing protein-lysine N-methyltransferase n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y5D1H0_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 5.690e-5
Identity = 36/103 (34.95%), Postives = 55/103 (53.40%), Query Frame = 1 
Query:  166 EEAIRNLQSAYVMLAPSSLEGVGVFAVRDVAEGV-EVMRWDWHKYASVFIAEEELQRRVPLEVFNQLRRIWHVDKRRQVATPLDFTSTLSYINFLNHSDQPNL 471
            EE +  L + YVML PS +EG+GVFA++D+ +G  EV      +   + I++EE++R +P  V   +      DK         F   +    FLNHSD+PN+
Sbjct:    4 EELLSELSNTYVMLRPSPIEGIGVFALKDIPKGCREVFSKHNTEDKWIEISKEEVER-LPSHVQLLIGNYCLYDKDHYFVPDYGFKK-IDLSLFLNHSDEPNV 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig114.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FXM5_ECTSI2.750e-5687.85SET domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A0G0X7W0_9BACT1.690e-636.89SET domain-containing protein n=4 Tax=Microgenomat... [more]
A0A2H0UWR1_9BACT1.720e-530.48SET domain-containing protein n=4 Tax=Bacteria can... [more]
UPI001986588C3.200e-532.63SET domain-containing protein n=1 Tax=Aquabacteriu... [more]
A0A7Y5D1H0_9BACT5.690e-534.95SET domain-containing protein-lysine N-methyltrans... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig114contigP-littoralis_Contig114:173803..178342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1332
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-28_002300.1
Cds size546
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig114.36.1prot_P-littoralis_Contig114.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig114 174493..178246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789463.5898411-UTR-P-littoralis_Contig114:173802..1744921680789463.5898411-UTR-P-littoralis_Contig114:173802..174492Pylaiella littoralis U1_48UTRP-littoralis_Contig114 173803..174492 -
1680789463.6564293-UTR-P-littoralis_Contig114:178246..1783421680789463.6564293-UTR-P-littoralis_Contig114:178246..178342Pylaiella littoralis U1_48UTRP-littoralis_Contig114 178247..178342 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789463.609084-CDS-P-littoralis_Contig114:174492..1746471680789463.609084-CDS-P-littoralis_Contig114:174492..174647Pylaiella littoralis U1_48CDSP-littoralis_Contig114 174493..174647 -
1680789463.618207-CDS-P-littoralis_Contig114:174930..1749551680789463.618207-CDS-P-littoralis_Contig114:174930..174955Pylaiella littoralis U1_48CDSP-littoralis_Contig114 174931..174955 -
1680789463.629536-CDS-P-littoralis_Contig114:175463..1755601680789463.629536-CDS-P-littoralis_Contig114:175463..175560Pylaiella littoralis U1_48CDSP-littoralis_Contig114 175464..175560 -
1680789463.6385484-CDS-P-littoralis_Contig114:175955..1760331680789463.6385484-CDS-P-littoralis_Contig114:175955..176033Pylaiella littoralis U1_48CDSP-littoralis_Contig114 175956..176033 -
1680789463.64725-CDS-P-littoralis_Contig114:178055..1782461680789463.64725-CDS-P-littoralis_Contig114:178055..178246Pylaiella littoralis U1_48CDSP-littoralis_Contig114 178056..178246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig114.36.1

>prot_P-littoralis_Contig114.36.1 ID=prot_P-littoralis_Contig114.36.1|Name=mRNA_P-littoralis_Contig114.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=182bp
MGSSASSKSRTEAEEEEEERRRREEAIRNLQSAYVMLAPSSLEGVGVFAV
RDVAEGVEVMRWDWHKYASVFIAEEELQRRVPLEVFNQLRRIWHVDKRRQ
VATPLDFTSTLSYINFLNHSDQPNLSFRYSVLSSVQREYTVIGWRRNDVF
VHGYDMTSRRSCSFSTLFSFSPHSGLYRLEK*
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mRNA from alignment at P-littoralis_Contig114:173803..178342-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig114.36.1 ID=mRNA_P-littoralis_Contig114.36.1|Name=mRNA_P-littoralis_Contig114.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4540bp|location=Sequence derived from alignment at P-littoralis_Contig114:173803..178342- (Pylaiella littoralis U1_48)
GTCCTCAACCCCCAAAACAAGGCGACACAGACATACTATATAAGAATATT
CAGCGACGACTACCGGGCCGGGTCTCGCTTAGCTTTTTGACCGACCATGG
GGTCATCGGCATCATCAAAATCCCGCACCGAGGCGGAAGAAGAGGAGGAG
GAGAGAAGACGAAGAGAAGAAGCGATACGCAACTTGCAGTCGGCGTACGT
CATGCTGGCACCCTCTTCCCTCGAGGGCGTAGGGGTGTTTGCCGTGAGAG
ACGTCGCGGAGGGGGTCGAGGTGATGCGGTGGGATTGGTGAGGGGACTTG
GATACTACGGCTGCTCTGTAATCGAATTTTACGGCAATGAATTATTGTGG
ACGTGCTCCTTCAATGTGACGAGACGCCCCAAGCGCGTACCTGCTCAGAA
CTGTTCTGGCTGGTACACTACCTAAATACACCGCCGCTTCGCTGACTTCA
CTTTCACCGTTCGATTCATGCACCAGACAGCTCCACGAGGACGCACGTGC
TTGCAAAAATATCTGATGCTCCCACACACGTTTTCCGCCTGCAGCTATCG
ACAGCCACCAACAACCTAGCACCTTCTACAGTATTGTAGCACCTCACCAA
GCAACTCCACCTCAGCGTATCAAAAAAGCAAAACCAACCATCAAATCTAC
CGAGTGACGCCGACCTAGCGCATCCATCAAGCATCACCACCTGGGCATTC
CACCAAGCAACGCCAACCTCGCGAATCCACCAAGTAGCACCAGCCTAGCG
AATCCGTCAAGCAAAATCGCTTGGTGCCCTTTGCCACACCTTAGGTTCGT
TTTAAACATGTTCCATAAATATGGAACATTTCCATAAATTTGGATCCATA
TCATGGAATCTAGCAAGCTCATTTTAAAGGTGTAAAAGTCGATTGAATAT
TATTTATGGAAATACGTTCGGCATAAAGTTCTTGAAAGGCATGAGAGGTG
ACGTACGGGCGATCAACCAGACACATCCAAGTGTTGTGAAGGACAGACAC
AGCAATGCCACCGCCATCTTCTCGTTCCCTACACCATCTCTCAACGTGAA
ACCTTCTTGGCGGTCACTTCCATTCAATGTCCTCTGTTCGTGTGGCGTTG
GTTTGGAGGCGGGGTCATTCAATCGACAGAGAGTAGCGTCGCTCTTTGTT
GAAAATGTCTAGAGAATATCAACCGACAGACCAATCTGACCACTTTAAAG
TACTTCGAAGTACTTGAAAACAGACCGCTTGTTCTACCGTCTGAAAGCGT
AATTACTGGGTTACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCGTAATACATCCGATACACCGCGATGC
TGATGCAGCCTGTCGATTGAACGACCCCACCTCTAACGCAACGCCCTGCT
GATGGAGAGGAGAAAAATGAGGTTTCACCCACGAAGGTTTCGCGTTGAGA
TGTACGAACTAGGTAACAAGAACTGACTTGTTGCTGTCGTGTTGTCATAT
GTCTTGGCTGGGTGTTCTCCCGCACCTCGTCATCATTTGCGTACCTTCAA
AATTCTCATTCAAATCAGTATTTTTCGCACGCCTGGCCAACTCCGGGCAC
TACCCAGCGGCCGAACTGGTAACGTGGTGGCTCTACGGTTGCCTCGATGC
CCCTCCGAGCTCGCCATTACGTGTAGGTCCCACGGCGTGCTGCTGCTGCT
GTGTATGCACGCTGGTTTGGACACTGGTTTAAAAATATGGAAAATATGGA
AACTTTCCAGAAATCTGGAAAGGACTTTGGCCACTTTTTTGGGCCCGAGT
CGGTTCCACATTTATGGAAAAAAAAGGACAAACGCCTCCTCGGAATGTCC
ATATCTATAAAATTTTCCATAAATATGGACAAACCACGTGATGTTCAAAA
CGACCTTACTATAAAACGGAGGCGAAAAGGCAAACGGACTGTGTTCAGCC
CTAAAAAAACTACGGAGGTATTCCTTGGATGCCACCGTGTGGGGGCATGG
TATATTTGATCGACGTGCTTGGCGCTTTCGTATTATGTATGACCAGTTGA
GTCGCAGCCAGTTCAAAAACTGTTCAAACAGAGAGGAACTGGCTCTGTCC
GCCCGCCCTCTGCTACATTTTATCTTTACTCTATGTTTGTGGCATGTGTG
GTAGTCGTTTCTGTGCGAAATCCGCCCACCTCCCTGACACTTACATCACG
GCAACATAAAGGATAAAATGTGACTTGAGCACACATGACTACAGGCGACC
GCCATACCTTACACCACCTGCCGCCGCCGCCGTCCCTATCTTCACTACGT
CATTTGAAGGCATAAATACGCGAGTGTTTTCATCGCGGAAGAAGAGCTAC
AAAGGAGGGTCCCCCTTGAGGTCTTCAATCAGCTTCGGTACGGACACGCG
CTGAATGGCGACGTGGGGGTTTCACACGTAAAAGTATTTCAAAAATTGGA
CCACCATTCAAATGAGCCGGAATATATTTTGCCTTTTGAGTACTGGACGA
GCCTCTTAGTGTGGGCATCACGTATGTACTACTTTCGTACATTTATATTC
ATGGCAGCGCTTTTCACCGCTGACCATGAATATATCTCTTTCGAGCGAGA
GGAGAGCTGTCGTTGCTTCCGGCGCACCACTCCAACCTGTACTGACCGTA
CCGAACGACACCGCAGATGGATGACGCTTGCGGCAAAATATCCAACATCT
ATCGTAGCTGTAAGATAAAATGCCTGGGGTAAAAAACACACTTTGCTGTG
CCGGTTTCTTTACTTTGCGTTTTATTCACCAGGCGAATCTGGCACGTGGA
TAAGCGACGGCAGGTGGCCACCCCCCTCGACTTCACTTCGACGCTGAGCT
ATATCAACTTCTTGAACCACTCCGACCAGGTACGTGAGGCAGTATGGGGT
ACATGCGGCGGTCGGTGCCTTATAGGCTGGTTGCGATTAATGGCGCGCGT
CGTTCCCAATCCTCGATAACTAAAATCGCCTCATGCGGGTGTGGTGCCCC
CAGTCCCCGTATTCCTTGCAGCGCCCCCACAAACTTTACACAGCCCTGTC
ACTTCTTTTCATCAAATCGCCGTCTGAACCGCGGGCCCTCTCCTGTCCTC
CCGGAAGAGCAGTCGCCTCCCCAACCCCCTGCCTGCCCCGGATCATCTTC
GTCGTGCCTCTTCGCTCGTCCCCATGATGTTTCGCACTGACCTCCGGACG
AAACTTTTCCCAATAGCACCGTCTGGCTCGCTTATGTCAATTGCACCTAT
CGTTCGCGGCGAAGTAGTGTTGCGCGCTACCCCTTTCCGAGTATTTTATG
ATGTTTAGCCCACCCTTTCCTCTTCTCGCTCGGCGGCGCTAAATGGTTCC
TATGATGCGCAACCCCTCCCCCCCACGCCCCCACCAGCCAAATTTATCTT
TTCGGTACTCCGACGGGGGCTACGTTACCTCGAGGGCCGTGAAGCGCGGG
GAAGAGCTGTGCATCAGCTACGACCGGGACTACTACCCCGGATACACCGC
TGGCTTTCGGGCTCGCGAATCGTGATGCGGGGGCGAGCCTTCAAGTGTAG
GTCCAGAGTGAAGAGCGCGACCGACTGGGCTCCGTGGAGGAGTGAAATCC
CTTCGGGAACGGTAAAGGGCGAAAATAACGTGCTCAAACCAATCGGCTGC
TACATTGTTTCGAAACGTGCTACGTTACGGTACATGCGGCCTCCGTTCTG
TCGTCGGTACAAAGGGAGTACACGGTTATTGGGTGGCGTCGTAACGACGT
GTTTGTCCATGGGTATGATATGACGTCGCGTCGGTCATGTTCATTTTCGA
CACTGTTTTCCTTTTCTCCTCATTCCGGCCTGTACAGACTGGAAAAGTGA
ATGCTCGGTGTGGTGGCCGTCAGAAATATGTCGTGCATGTTGCTACCCAC
AACCGAAGCGTTCTGTTTCGGGCGGCGTTTTACCCAGCACCACTCTGGCT
GTACAAAACCGGTTGAATCGGATGATGTGTCTGTGTCTTCTTGCTTGTTA
CGCTGGCGTGTCTCGTGGTACGTGCTCCTGCTGTGTGTCGTCGTGCTCCT
GCTGGGTCTGTCTGCTGTGTATGCTCTTGGTACGGAATTCATATGATGCT
TCACGCATGACCACCATATGGTTTGAAATGTATTTACTTGTTGGATTGTT
TCGGAACGTCTTCGCTCTTTACACCGCTTGTTTTCGTGCATCGTAAAGTA
CATGTGTGTCTATTTATTGCTTGGAATTGTGCTCTTGCTTGTTTTGGTAC
GTTACCACCCCCTCACATACACGCAGTCGGTGGTGCGCGTGCTCTGATTC
TTACTGCATCATCTCTGTGCACGTCGCAAGTTTAAACGGGACCGATCGTG
GTGTCAGCGTTGTTTCGTTCTCTTCGAGTAGTAACTGCTGTCGCATACAT
GAAATAAATGTAGATCAGGATGACGAGCGGCCTGGCGACGCCTTCGCTTG
TTTTTATGGAGGTTTTGTTCAAAAACTTCTTCCATGATTTTTCACACGGG
GGGCGCTCCAGCCCGGGGTAACCAGCAGATCATACCACCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig114:173803..178342-

>mRNA_P-littoralis_Contig114.36.1 ID=mRNA_P-littoralis_Contig114.36.1|Name=mRNA_P-littoralis_Contig114.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=546bp|location=Sequence derived from alignment at P-littoralis_Contig114:173803..178342- (Pylaiella littoralis U1_48)
ATGGGGTCATCGGCATCATCAAAATCCCGCACCGAGGCGGAAGAAGAGGA
GGAGGAGAGAAGACGAAGAGAAGAAGCGATACGCAACTTGCAGTCGGCGT
ACGTCATGCTGGCACCCTCTTCCCTCGAGGGCGTAGGGGTGTTTGCCGTG
AGAGACGTCGCGGAGGGGGTCGAGGTGATGCGGTGGGATTGGCATAAATA
CGCGAGTGTTTTCATCGCGGAAGAAGAGCTACAAAGGAGGGTCCCCCTTG
AGGTCTTCAATCAGCTTCGGCGAATCTGGCACGTGGATAAGCGACGGCAG
GTGGCCACCCCCCTCGACTTCACTTCGACGCTGAGCTATATCAACTTCTT
GAACCACTCCGACCAGCCAAATTTATCTTTTCGGTACTCCGTTCTGTCGT
CGGTACAAAGGGAGTACACGGTTATTGGGTGGCGTCGTAACGACGTGTTT
GTCCATGGGTATGATATGACGTCGCGTCGGTCATGTTCATTTTCGACACT
GTTTTCCTTTTCTCCTCATTCCGGCCTGTACAGACTGGAAAAGTGA
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