mRNA_P-littoralis_Contig114.14.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig114.14.2
Unique NamemRNA_P-littoralis_Contig114.14.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig114.14.2 vs. uniprot
Match: D7FXM0_ECTSI (Histone domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXM0_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.150e-58
Identity = 109/144 (75.69%), Postives = 113/144 (78.47%), Query Frame = 3 
Query:   18 MGRVKHTANKAVGGKKPSXXXXXXXXXXXXXXXXXXXXXXXXXRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEIQETFTPAGKSYRWQAVALLALQEAAEAHLISLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 449
            M R+KHT NKAVGG K +                         RRFRPGERALKEIRAYQRTTELLLRKLPFARLVKE+QET TPAGKSYRWQA ALLALQEAAEAHL+SLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE
Sbjct:    1 MARLKHTKNKAVGGSKSTKSPRKTLASRQGGGGSADGGEPRKRRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 144
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BLAST of mRNA_P-littoralis_Contig114.14.2 vs. uniprot
Match: A0A836C8D2_9STRA (Histone-fold-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D2_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.790e-40
Identity = 77/101 (76.24%), Postives = 88/101 (87.13%), Query Frame = 3 
Query:  147 RRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEIQETFTPAGKSYRWQAVALLALQEAAEAHLISLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 449
            RR +PGE+ALKEIRAYQR+TELL+RKLPFARLVKE+Q +FTP G  YRW A A+LALQEAAEAHL+ LFEDANL  +HAKRVTIM +D QLARRIRG+ RE
Sbjct:   44 RRHKPGEKALKEIRAYQRSTELLIRKLPFARLVKEVQTSFTPGGLQYRWAATAVLALQEAAEAHLVGLFEDANLACIHAKRVTIMPKDMQLARRIRGRLRE 144
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BLAST of mRNA_P-littoralis_Contig114.14.2 vs. uniprot
Match: A0A836CIP5_9STRA (Histone H3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIP5_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.790e-39
Identity = 77/101 (76.24%), Postives = 86/101 (85.15%), Query Frame = 3 
Query:  147 RRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEIQETFTPAGKSYRWQAVALLALQEAAEAHLISLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 449
            RR +PGE+ALKEIR YQR+TELL+RKLPFARLV+E+QE FTP G  YRW A ALLALQ AAEAHL+ LFEDANL A+HAKRVTI  RD QLARRIRG+ RE
Sbjct:   23 RRHKPGEKALKEIRTYQRSTELLIRKLPFARLVREVQEMFTPRGVLYRWAADALLALQHAAEAHLVGLFEDANLAAIHAKRVTIQPRDMQLARRIRGRMRE 123
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BLAST of mRNA_P-littoralis_Contig114.14.2 vs. uniprot
Match: A0A7S3M2P3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2P3_9STRA)

HSP 1 Score: 146 bits (368), Expect = 4.750e-38
Identity = 74/101 (73.27%), Postives = 87/101 (86.14%), Query Frame = 3 
Query:  147 RRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEIQETFTPAGKSYRWQAVALLALQEAAEAHLISLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 449
            +R+RPGERALKEIR YQR+T+LL+R+LPFARLV+E+Q +     K YRWQA A+LALQEAAEAHL SLFEDANLCA+H KRVT+M +DFQLARRIRG  RE
Sbjct:   40 KRYRPGERALKEIRYYQRSTDLLIRRLPFARLVREVQVSIVSNKKEYRWQADAILALQEAAEAHLSSLFEDANLCAIHGKRVTVMPKDFQLARRIRGPMRE 140
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BLAST of mRNA_P-littoralis_Contig114.14.2 vs. uniprot
Match: A0A7S2BDC5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BDC5_9STRA)

HSP 1 Score: 144 bits (364), Expect = 5.030e-38
Identity = 75/101 (74.26%), Postives = 86/101 (85.15%), Query Frame = 3 
Query:  147 RRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEIQETFTPAGKSYRWQAVALLALQEAAEAHLISLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 449
            RR RPGERALKEIR YQR+T+LL+RKLPFARLV+E+   FT   K YRWQA ALLALQE+AEAHL+ LFEDANLC +H+KRVT+MV+D QLARRIRG  RE
Sbjct:    1 RRHRPGERALKEIRTYQRSTDLLIRKLPFARLVREVMLQFT--NKEYRWQASALLALQESAEAHLVHLFEDANLCTIHSKRVTVMVKDIQLARRIRGPMRE 99
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BLAST of mRNA_P-littoralis_Contig114.14.2 vs. uniprot
Match: A0A7S3JND5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JND5_9STRA)

HSP 1 Score: 145 bits (366), Expect = 5.110e-38
Identity = 75/100 (75.00%), Postives = 89/100 (89.00%), Query Frame = 3 
Query:  150 RFRPGERALKEIRAYQRTTELLLRKLPFARLVKEIQETFTPAGKSYRWQAVALLALQEAAEAHLISLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 449
            R RPG RALKEIR YQR+T+LLLRKLPFARLV+EIQ++F    +  RWQA A++ALQEAAEAHL++LF+DANLCA+HAKRVT+MVRD QLARRIRGQ+RE
Sbjct:   24 RLRPGMRALKEIRKYQRSTDLLLRKLPFARLVREIQQSFVQ--RDLRWQAEAIIALQEAAEAHLVALFQDANLCAIHAKRVTLMVRDLQLARRIRGQARE 121
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BLAST of mRNA_P-littoralis_Contig114.14.2 vs. uniprot
Match: A0A8K1FGE4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGE4_PYTOL)

HSP 1 Score: 146 bits (368), Expect = 7.990e-38
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 3 
Query:  147 RRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEIQETFTPAGKSYRWQAVALLALQEAAEAHLISLFEDANLCALHAKRVTIMVRDFQLARRIRGQ 440
            RR+RPG  AL+EIR YQR+TELLLRKLPFARLV+EIQ  FTP  + YRWQA ALLALQEAAEAHL+ LFEDANLCA+HAKRVT+MV+D QLARRIRG+
Sbjct:   58 RRYRPGTVALREIRFYQRSTELLLRKLPFARLVREIQMEFTP--REYRWQAEALLALQEAAEAHLVRLFEDANLCAIHAKRVTLMVKDIQLARRIRGR 153
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BLAST of mRNA_P-littoralis_Contig114.14.2 vs. uniprot
Match: A0A6G0XGQ6_9STRA (Histone domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGQ6_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.260e-37
Identity = 74/101 (73.27%), Postives = 87/101 (86.14%), Query Frame = 3 
Query:  147 RRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEIQETFTPAGKSYRWQAVALLALQEAAEAHLISLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 449
            RR+R G++A  EIR YQ++TELLLRKLPFARLV+EIQ  F+  G+ YRWQA ALLALQEAAEAHL+ +FEDANLCA+HAKRVTIMV+D QLARRIRG+  E
Sbjct:   48 RRYRNGQKAFLEIRRYQKSTELLLRKLPFARLVREIQLQFSGIGQQYRWQAEALLALQEAAEAHLVRIFEDANLCAIHAKRVTIMVKDIQLARRIRGREHE 148
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BLAST of mRNA_P-littoralis_Contig114.14.2 vs. uniprot
Match: A0A7S0AMH5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AMH5_9STRA)

HSP 1 Score: 140 bits (354), Expect = 2.900e-36
Identity = 74/100 (74.00%), Postives = 84/100 (84.00%), Query Frame = 3 
Query:  150 RFRPGERALKEIRAYQRTTELLLRKLPFARLVKEIQETFTPAGKSYRWQAVALLALQEAAEAHLISLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 449
            R RPGE+ALKEIRAYQ +T+LL+R+LPFARLV+EIQ T T   + YRWQ  A+LALQEAAEAHLI LFED NLCA+H KRVTIM +D QLARRIRG SRE
Sbjct:   27 RMRPGEKALKEIRAYQNSTDLLIRRLPFARLVREIQSTMTR--QPYRWQGTAILALQEAAEAHLIGLFEDCNLCAIHGKRVTIMPKDMQLARRIRGFSRE 124
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BLAST of mRNA_P-littoralis_Contig114.14.2 vs. uniprot
Match: A0A2D4CG91_PYTIN (Histone H3 putative (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CG91_PYTIN)

HSP 1 Score: 140 bits (352), Expect = 4.510e-36
Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 3 
Query:  147 RRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEIQETFTPAGKSYRWQAVALLALQEAAEAHLISLFEDANLCALHAKRVTIMVRDFQLARRIRGQ 440
            RRFRPG  AL+EIR YQR+T+LLLRKLPFARLV+EIQ  FT   + YRWQA ALLALQEAAEAHL+ LF+DANLCA+HA RVT+MV+D QLARRIRG+
Sbjct:   18 RRFRPGAVALREIRFYQRSTDLLLRKLPFARLVREIQMEFTT--REYRWQAEALLALQEAAEAHLVRLFDDANLCAIHANRVTLMVKDIQLARRIRGR 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig114.14.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXM0_ECTSI1.150e-5875.69Histone domain-containing protein n=2 Tax=Ectocarp... [more]
A0A836C8D2_9STRA3.790e-4076.24Histone-fold-containing protein n=1 Tax=Tribonema ... [more]
A0A836CIP5_9STRA2.790e-3976.24Histone H3 n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7S3M2P3_9STRA4.750e-3873.27Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2BDC5_9STRA5.030e-3874.26Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3JND5_9STRA5.110e-3875.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8K1FGE4_PYTOL7.990e-3878.57Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0XGQ6_9STRA2.260e-3773.27Histone domain-containing protein n=1 Tax=Aphanomy... [more]
A0A7S0AMH5_9STRA2.900e-3674.00Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A2D4CG91_PYTIN4.510e-3675.51Histone H3 putative (Fragment) n=1 Tax=Pythium ins... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig114contigP-littoralis_Contig114:69360..75093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXM0
Preferred nameCENPA
PFAMsC1-set,Histone,MHC_I
Model size1645
Max annot lvl2759|Eukaryota
KEGG koko:K11253,ko:K11495
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000041,GO:0000070,GO:0000132,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000819,GO:0000910,GO:0000939,GO:0000941,GO:0001817,GO:0001818,GO:0001889,GO:0001932,GO:0001934,GO:0002526,GO:0002577,GO:0002578,GO:0002583,GO:0002584,GO:0002589,GO:0002590,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0002697,GO:0002698,GO:0002700,GO:0002701,GO:0002703,GO:0002704,GO:0002706,GO:0002707,GO:0002709,GO:0002710,GO:0002718,GO:0002719,GO:0002724,GO:0002725,GO:0002791,GO:0002793,GO:0002819,GO:0002820,GO:0002822,GO:0002823,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003774,GO:0003777,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005727,GO:0005729,GO:0005737,GO:0005768,GO:0005769,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005938,GO:0006276,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006355,GO:0006357,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0007088,GO:0007154,GO:0007162,GO:0007163,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007275,GO:0007346,GO:0007565,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009267,GO:0009566,GO:0009567,GO:0009605,GO:0009719,GO:0009790,GO:0009792,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009897,GO:0009966,GO:0009967,GO:0009968,GO:0009986,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010106,GO:0010468,GO:0010469,GO:0010556,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010817,GO:0010862,GO:0010948,GO:0010959,GO:0012505,GO:0015031,GO:0015629,GO:0015630,GO:0015682,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019219,GO:0019220,GO:0019222,GO:0019237,GO:0019725,GO:0019953,GO:0022402,GO:0022407,GO:0022408,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030001,GO:0030003,GO:0030010,GO:0030100,GO:0030155,GO:0030162,GO:0030509,GO:0030541,GO:0030543,GO:0030863,GO:0030864,GO:0030881,GO:0031055,GO:0031099,GO:0031100,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031329,GO:0031330,GO:0031399,GO:0031401,GO:0031410,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031618,GO:0031667,GO:0031668,GO:0031669,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0031982,GO:0032091,GO:0032092,GO:0032268,GO:0032269,GO:0032270,GO:0032434,GO:0032435,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033554,GO:0033572,GO:0034080,GO:0034220,GO:0034502,GO:0034506,GO:0034508,GO:0034613,GO:0034622,GO:0034724,GO:0034728,GO:0034755,GO:0034756,GO:0039706,GO:0040001,GO:0042176,GO:0042177,GO:0042221,GO:0042325,GO:0042327,GO:0042445,GO:0042446,GO:0042592,GO:0042594,GO:0042886,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043235,GO:0043269,GO:0043393,GO:0043486,GO:0043505,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044454,GO:0044459,GO:0044464,GO:0044703,GO:0044706,GO:0044815,GO:0044877,GO:0045132,GO:0045177,GO:0045178,GO:0045184,GO:0045786,GO:0045807,GO:0045839,GO:0045861,GO:0045930,GO:0045937,GO:0046602,GO:0046603,GO:0046605,GO:0046606,GO:0046634,GO:0046636,GO:0046821,GO:0046883,GO:0046887,GO:0046916,GO:0048259,GO:0048260,GO:0048285,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048732,GO:0048856,GO:0048871,GO:0048878,GO:0050000,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050801,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051098,GO:0051099,GO:0051100,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051250,GO:0051252,GO:0051276,GO:0051293,GO:0051294,GO:0051301,GO:0051303,GO:0051304,GO:0051307,GO:0051310,GO:0051321,GO:0051382,GO:0051383,GO:0051493,GO:0051494,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0055037,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060255,GO:0060341,GO:0060393,GO:0060586,GO:0060627,GO:0060968,GO:0061008,GO:0061136,GO:0061638,GO:0061640,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070199,GO:0070507,GO:0070727,GO:0070848,GO:0070887,GO:0070925,GO:0071103,GO:0071241,GO:0071248,GO:0071281,GO:0071310,GO:0071363,GO:0071459,GO:0071495,GO:0071496,GO:0071702,GO:0071705,GO:0071772,GO:0071773,GO:0071824,GO:0071840,GO:0071944,GO:0072512,GO:0072594,GO:0080090,GO:0090087,GO:0090092,GO:0090100,GO:0090276,GO:0090277,GO:0097159,GO:0097286,GO:0097421,GO:0097708,GO:0098552,GO:0098655,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098687,GO:0098711,GO:0098739,GO:0098771,GO:0098796,GO:0098797,GO:0098802,GO:0098813,GO:0099568,GO:0099587,GO:0140013,GO:0140014,GO:1900120,GO:1900121,GO:1900122,GO:1900390,GO:1901363,GO:1901799,GO:1902275,GO:1902850,GO:1903037,GO:1903038,GO:1903046,GO:1903047,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903530,GO:1903532,GO:1903827,GO:1904282,GO:1904283,GO:1904432,GO:1904434,GO:1904435,GO:1904437,GO:1905269,GO:1990357,GO:1990459,GO:1990641,GO:1990712,GO:1990837,GO:2000008,GO:2000058,GO:2000059,GO:2000112,GO:2000272,GO:2000273,GO:2001141,GO:2001185,GO:2001186,GO:2001252
Exons5
Evalue1.4e-64
EggNOG OGsCOG2036@1|root,KOG1745@2759|Eukaryota
Ec32 ortholog descriptionHistone H3, probable CenH3
Ec32 orthologEc-28_002250.1
Descriptionprotein heterodimerization activity
Cds size435
COG categoryB
BRITEko00000,ko00001,ko03036,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig114.14.2prot_P-littoralis_Contig114.14.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig114 70553..75076 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789463.0880773-UTR-P-littoralis_Contig114:69359..705521680789463.0880773-UTR-P-littoralis_Contig114:69359..70552Pylaiella littoralis U1_48UTRP-littoralis_Contig114 69360..70552 -
1680789463.1609356-UTR-P-littoralis_Contig114:75076..750931680789463.1609356-UTR-P-littoralis_Contig114:75076..75093Pylaiella littoralis U1_48UTRP-littoralis_Contig114 75077..75093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789463.1056366-CDS-P-littoralis_Contig114:70552..706031680789463.1056366-CDS-P-littoralis_Contig114:70552..70603Pylaiella littoralis U1_48CDSP-littoralis_Contig114 70553..70603 -
1680789463.1167817-CDS-P-littoralis_Contig114:71304..713851680789463.1167817-CDS-P-littoralis_Contig114:71304..71385Pylaiella littoralis U1_48CDSP-littoralis_Contig114 71305..71385 -
1680789463.1264672-CDS-P-littoralis_Contig114:71861..719391680789463.1264672-CDS-P-littoralis_Contig114:71861..71939Pylaiella littoralis U1_48CDSP-littoralis_Contig114 71862..71939 -
1680789463.1369545-CDS-P-littoralis_Contig114:72786..729461680789463.1369545-CDS-P-littoralis_Contig114:72786..72946Pylaiella littoralis U1_48CDSP-littoralis_Contig114 72787..72946 -
1680789463.1520884-CDS-P-littoralis_Contig114:75011..750761680789463.1520884-CDS-P-littoralis_Contig114:75011..75076Pylaiella littoralis U1_48CDSP-littoralis_Contig114 75012..75076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig114.14.2

>prot_P-littoralis_Contig114.14.2 ID=prot_P-littoralis_Contig114.14.2|Name=mRNA_P-littoralis_Contig114.14.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=145bp
MGRVKHTANKAVGGKKPSKKSSSKSAASRRASGDGGGGEPRKRRRFRPGE
RALKEIRAYQRTTELLLRKLPFARLVKEIQETFTPAGKSYRWQAVALLAL
QEAAEAHLISLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE*
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mRNA from alignment at P-littoralis_Contig114:69360..75093-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig114.14.2 ID=mRNA_P-littoralis_Contig114.14.2|Name=mRNA_P-littoralis_Contig114.14.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=5734bp|location=Sequence derived from alignment at P-littoralis_Contig114:69360..75093- (Pylaiella littoralis U1_48)
GGAGCCCGGTTCGCTCAATGGGGCGCGTGAAGCACACCGCGAATAAGGCG
GTCGGTGGCAAGAAGCCCTCGAAGAAGTCAAGGTGAAAAAGATTGAGATT
GTGCGCGCCTTCCCTCCTTGGTGTTTTGGGGTCCCCGAGGTCGCTGCTGC
CTCTTTTACAGCGGTATCAAATGAATGCTGAACAGGTTTCTTACATAGCT
CCGATGCATCGTCCGTAGCGATGCAGCTTGCTGTCAACCCTTCAGCTAAG
AATCCTCGTTTGGCGTAGTCGGTGATGGTACGGCGGTCCCGCTCTGCTGT
TGGCGTACGATTTCCAAGCCCTTTTTCCATGTGTCAATTTCGGTTCAATT
TTCGAACAACCCAAGGACGCAATCATGGAGAAGATTTTCCTGGGATTATC
GCGCTCGCCGCTTTGTTTTTCCTACGAAAGCAACACAACAATGCGCACCT
GATACCTGGTACCTGAACCTGATACACATGATTCATGCGTATACGGTATG
ATACGAGATATTTGTACATACGCATCTATATGATTAGAGACGGACACGCC
CCGTTTCTCGTTTCTGCGTTATCCTCTGAAGTCATATCATACCAGTATGA
TATTATATGTATGATACAAAAAATAACAACGTGCAGCCTTTGTGCTGTTC
TCCCTACATGAACACAGCAGACGCGCGTGCTCTACTGCTGTTGCGCTGCA
ATTTTGTCTGCTCTCACACGCAGCCTCTCGCCGGAGATTGCCCTCTGCGA
CTTTGCAGGTCAGCGTCGCAAGCATGCCTACTTGTACAGCAAGCACAGCA
GTACATGATACCGTATACTTCGTACAAGTATATGATAGTAGCACCAGCAG
AGCATCTCTCCAGCTCCAAGATCCAATGTGTGAGCACCTCTTGTTTTTCC
TGTGCTGTTTCTAGCTAGCACTATGTGTTCCACCGGTAGCCCTTTATTTG
CAAGTTAACACTGCAAATAGTACCGTGCAGTTTAACTTGACAACACGGTC
TGATTGGCCAAAGGCCAACGGCTGCTTTTTGTCAAGAACGCCAACCGAAC
GCGCGGCGGAGCCGTGCAGAGGCCCCTTTCGCACCCGATCACCCCAGAGG
TCGAGCGTGCGATCACCCCAGAGGTCGTGTGGGTTAGGGCTAGGGCTAGG
GCTAGGGATAGGGCTAGGTTGGTCGGGAGCGGCATAGATCATGAGGAGTG
TTGTCAAAACTGCAAATAACTTTTGCAGTGTTCAACTGCAAATAGGGGAT
ACCGTGTTCCGCCACAGGCGCGGCTGGGAGTTATATAGGGTTGCATGCAC
CATCCCCCGGGTCTACCATTTCTCTTTTGTACTCGTAGACCTTACTTGGT
TCAGTTGTCAGTGACTCAGTCGATCAAGTTGTGCAGCTCTCAGAGTCAAT
CCCACGACGGGAAGCGGTCACTTTTTTTTTTGTTCCGAAGAGCAAGTCTC
CCCTGTCCTGACCTAAAACCAGAGCGCCTCGTCGTACCTGGTGGGCCTAC
ACGGCTTTCGCTGACAACAGAACAGAAAAAAAAACTGCCGCAGGCATTTT
ACACAGCAGTACCTACAGAGTACAGTGTACATTGCATTGCCGTTGTCTCC
TGAACAACCGTTCCGCCCTCTCGGCAAAAGGTTTCTTACATGTATCAGTA
TTTCCGTGTGGGATGCGGCACTGAACACGTTACACGCCCTCATGGCATCT
TGAAAGAAATACCATGATGAAAGACAGACGTGTACTTGTATGGTACACGT
ACAAATCATAAAATATGCATCCCCTGTGTTTTAGGCATTAACGCGATCGA
TCCTCAAAATTGTACCCGTACGTCCCGGAAGGCTGCCCACTCGTCCCTGA
TGGCAGTTGTATCATATGCAGGTTGAATACTGCGGTACTACGGTTGATAG
CGAGGAGCATTTTGGAGCATGAATGCATGCAAGTGTGCGTCTTTTTGGTT
TGATCGAGGATGGCTTTTACACGACACCAGACGATCGACCACGCTCCTGC
ACTTTCTGCGCCTACCTCCAGTCTCAAAACGAACAACACGTGTGTTTGTG
TGCATGTGCGTGTGCGTATGCATGTGTGTGTGCGTGTGCGTGTGCGCGTG
TGTGTGTGCGGTGTGTGCGCGCGTGTGTGTGTGTGTGTGTTTTGTAGCAG
CAAATCGGCGGCGTCGAGAAGGGCGTCTGGTGACGGCGGCGGCGGTGAAC
CCCGAAAGCGAAGGCGTTTTCGTCCCGGGGAGAGGGCTTTGAAAGAGATC
CGAGCGTACCAGCGCACCACGGAGCTGCTCCTGAGGAAGCTCCCTTTCGC
GCGCCTGGTACGTGCCAGTGTTTTTCGTTGTTGTTTTTCGTTGTTGTTGT
TTATTGCCACGTTTATCACTGAGGTTGTCGCGACAGACGGAATGTGCGAT
CTTGTGTTGAGAGACAGCGTCAAGCATCGAAGAAGAAAGAAAACCGCCGT
CAAATTGCAACTACTGCTTTGGCCGAGATGAAGGGTTAGGATTTTTAAGG
TGACGGGGCGGCCGAGGATATCGCAACGAATGGGGCGACCCTCCCCGCCC
CTTTCGACTTGATTTTGAAGAAATCAAGTCTCCACAAAGAGCAAGGGTAC
CAAACCAAACGAACGGCATTTTTGGAAAAACACATATCGTCTCGTCGGTC
TTGAAAGCGACCTAATTTTTGGCGTCTCCTGGCGCGGAAATTCTTGCACG
AGCGTGTGTGTGTTTGTGTGTTACTCGATATTTGTGCCACTGAACGTGGC
CACCCTTGACAGCTCGACCGGTCCAGCCACCTCGAAACGGGTGGCATTTT
TTTATCGATTGCTTGCTTGGCGAAAAATGGCGTCGTTCGTCGCACGCACA
CATACAAAAGCAGACTACAGCGTCAGTGTACAGCAGTATGTGCTTCGAAA
CATTTAAGTGATGATTTAGCGTCCACGTAAATGGTACTTACTGTACATGA
TTCAGACTGCCACCACGCACGATATTAACGCTTGCAACTGACAGCTTTCC
TTTTTCATTCGGGCGGAGTTTGTTCTCTTCTCTGGGGTTGTGGTTGTTCG
TTGGGCGGCGGGGATGTTGTCGTGGGTGTGGGTGTTGGTGTGGGTGTCCT
GCTTCGAAGTATTTTTCTCAATTCCGTTTTTACTCCATCCTTGCATGCTG
TCAGGTCAAGGAAATCCAGGAGACTTTTACTCCCGCGGGGAAGTCGTACC
GGTGGCAGGCGGTGGCTCTGCTGGCGTTACAGGTACGCACGGATAAACAA
TAGGCGGGGAGACCTGAGCACCCTTAGTAAGCTCTTTCTCGAATTGTTGT
TGTCGTTGTCGTCATCGTCGTCGTTGTTGGCGCCGCTGCTGCCGTTGTAT
CTCACATCATTGGTGAGCTCATCGCCAAAATCTAGCCCGTAGCCGAAAGT
CACGGCAGCTGGGGAACAACCTTCCTTCGCATGTGTGTGTGCATGCGCAT
CTTCCGGTTCTCAACGAAACACATCGCTGCGCCACCGATTCTTGTTTCGC
TGCGTAAATAAAGTGCCGTTTCACAAAAGTTGCCGTTTCGGTTCGTTGAT
TTTTGTCGTCGAAACAATATGGCCGCGGAGGTGCGCACCTGGCATCGATC
TTCGAGGACGCCTCGCACTTGTGCCACCGATTCCTGTTTGAGGGCGTATA
TAGTGAGTGCCGTTTGGTAACAGTTGCCGTTTCGACCCGTTTTTTTCTGT
CTCAACAGGAAGCCGCGGAGGCGCACCTGATATCGCTCTTCGAGGACGCC
AATCTCTGCGCGCTGCACGCCAAACGAGTGACGATAATGGTGAGTAAGAA
CGAAAGCGAAAAAGAAAGAATGCTAGTGGGATGACGTGCGTTTGGTGCGG
TGCGGTGCGGTGCGGAGATTTTTGTTCTCAAGTCCGTACATCTTGTCCGG
CTGCACTCTCCTCCTTTGCGTGCCTGTTTGCCTGTTTGCCTGTTTGCCTG
TCCATCTGGGCATTGCTGCTGGCTGGAGCCGACTCCCTCTCTTTTTTTTT
CACCTTCAACAAAAATTAGATAATGATCGATGATGATTGCACGTCCTGTT
TTTTCCCTGAGCGAAGGAGGGGTCGCGGATAGAATGGGGTATTTACGTAG
CACGTAAACGTACTTGATTTCGTGCAAAGAAAGCGCCCGGGTGAACCAAA
AAAAAGTGTGTTGAGTTTCTGCAAACTTGGGAAAAAAAAAAAACTCCTTG
GTTTGCCTTTCTTCTGTGTGGCCCCGGTTGGTGCGCCCAACTTACACCGG
AAGGTGTAGACTGGCATCCGGAATATACATGGGATGACAACACGTGTACT
GCTCGTCAACGAAAGGTTAATATTTTTTGCACCCATCTAATCATGTTACA
CGTTACATAACGAAAATACTTCGTATGTATAGTGCCAGTATATTTTGACG
CTGTGAATAGATATCGTATCGTGTAACTCATTTTTCATTCTTCTCCTTTA
TTTGTACCTTTTTTTATCCTCGACTTTTTTTCACTCAAAGGTCCGGGACT
TTCAGCTAGCGCGCAGGATTCGAGGTCAAAGTCGAGAGTAATAGGAGGGA
GGGAGAGGCCAGGTCGGAGGGAAACGAACAAGCAACCAAGCACCCAATCA
AACCTCTGGGAATGCTTGTTTTTTAACAAGGGGGGAGGGGGCGTGGAAGG
CGGGTCTTAGCAGGGGGCAGGGTAGGGGTCGAGGGAAATCGGCACAATAA
AAAGCTGGGAAAGCTTGTTGTCTAGAAGTCGTGCCTATGCAGGGGTGAAG
GGCGGGGGGGATACAACTACCTGGGAAAGCTTGTAATTCAGAAGGCGGGC
TCATGCAAAAGGGTGCGGGGAGGGGTTTCCGAGCGAGTTTTCGCGGGAAA
ACGAATAGATGGAAGGAATGCAGCCGAAGGTGACTGGGTCGGTTGTTTTC
GTTTCCATGTGTGTTGATGAGGCGTCTTGGTGTATCTAGCAACGCTCATG
TATTTTACCCCACCAGGTTGCAGCACTTTTTTTCATTTTGCTTTTCGTTT
TGTCTTTTGTGGCAACTATGGCGCGTGCGTCTTGTCCCCCTGTGTCGCGC
CTGTGTCGTGCGGTCATCGACCGGCTTCTTGCTTCTATTTATACCCGGCT
TGCTGGAAATCATGCGGACATCCGGAAGGTATTTTTTTTACCGGATTATG
TGACGTGGCGGGGCAATTGATTGACCCCGCTTTTTTGTGGCAGAAAGAAC
GCTCGCTTTGCTCGTCAACGACGACAAATCGACAGTGAGGAAGACCACGA
GAGGCAGCAGGCCTGCCGATCGCCCTCGGTGTACTGTAATAGAGCTTTCG
GCCCCCTCCCTCCACGTTTTGCAGCTAGACGCGCATTGCGTTTCTTCATC
TTTTTTTATTTTTTGCGTAGATTAAGATGGTACAAAGCAAGCCCTCTTCC
ACCCCCAACCCCTCCCCGCTCTCCCATCCCCGAGTGCAAACAGTGGCTAG
GTTTGGTTGTCTGTACACGCCTCCTTTTGTTTTTTTGAGCGCCTTCGTTC
GCGCTCCGTCCGCCCCTCTAGGGTACCTTAAATACCCAAAGTATGGATTT
TTTATTTTCCGGCTTGGCTCGGATGATAAAAAAATTGAGTTCATTCGATC
TCCCCGCGGGACGGAACGGCCGACGACTACCGCATGATGTTGCTGTACCT
TTTCCGTCTGCGCGGGCTTTGTTTCGAGTGCAATACACGTAGGAGACGTT
CCGTACGCGCGAAGAGAGATCCCTGCTTCGGGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig114:69360..75093-

>mRNA_P-littoralis_Contig114.14.2 ID=mRNA_P-littoralis_Contig114.14.2|Name=mRNA_P-littoralis_Contig114.14.2|organism=Pylaiella littoralis U1_48|type=CDS|length=435bp|location=Sequence derived from alignment at P-littoralis_Contig114:69360..75093- (Pylaiella littoralis U1_48)
ATGGGGCGCGTGAAGCACACCGCGAATAAGGCGGTCGGTGGCAAGAAGCC
CTCGAAGAAGTCAAGCAGCAAATCGGCGGCGTCGAGAAGGGCGTCTGGTG
ACGGCGGCGGCGGTGAACCCCGAAAGCGAAGGCGTTTTCGTCCCGGGGAG
AGGGCTTTGAAAGAGATCCGAGCGTACCAGCGCACCACGGAGCTGCTCCT
GAGGAAGCTCCCTTTCGCGCGCCTGGTCAAGGAAATCCAGGAGACTTTTA
CTCCCGCGGGGAAGTCGTACCGGTGGCAGGCGGTGGCTCTGCTGGCGTTA
CAGGAAGCCGCGGAGGCGCACCTGATATCGCTCTTCGAGGACGCCAATCT
CTGCGCGCTGCACGCCAAACGAGTGACGATAATGGTCCGGGACTTTCAGC
TAGCGCGCAGGATTCGAGGTCAAAGTCGAGAGTAA
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