mRNA_P-littoralis_Contig114.11.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig114.11.2
Unique NamemRNA_P-littoralis_Contig114.11.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig114.11.2 vs. uniprot
Match: A0A6H5K0K8_9PHAE (NADH-u_ox-rdase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0K8_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.420e-43
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    1 MAFEDPKFPVTDPAPGMSTVYGNLNATDLATITLATAGSAAWCFKGAVKGIRGPNAVVGGALGLFGGLLLAGQSSFGRLTGQRK 252
            MAFEDPKFPVTDPAPGM TV+GNLNATD+AT+ +ATAGSAAWCFKG VKGIRGPNAVVG +LGL GGL+LAGQSSFGRLTGQRK
Sbjct:    1 MAFEDPKFPVTDPAPGMGTVFGNLNATDVATVVVATAGSAAWCFKG-VKGIRGPNAVVGASLGLIGGLMLAGQSSFGRLTGQRK 83
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BLAST of mRNA_P-littoralis_Contig114.11.2 vs. uniprot
Match: A0A7S0WTB3_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WTB3_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 3.870e-7
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 1 
Query:   10 EDPKFPVTDPAPGMSTVYGNLNATDLATITLATAGSAAW-CFKG-AVKGIRGPNAVVGGALGLFGGLLLAGQSSFGRLTG 243
            ++PK+ V D APG++  +GN +  D+     AT  +  + C  G  VKG+ GP+A +G A+G+  G LLA Q+S GRL G
Sbjct:    6 DEPKYKVIDSAPGLAKCFGNCSFEDMKIAAGATFAATTYGCLAGKGVKGMAGPSAYMGLAIGVTAGALLAYQNSAGRLMG 85
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig114.11.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0K8_9PHAE1.420e-4386.90NADH-u_ox-rdase domain-containing protein n=2 Tax=... [more]
A0A7S0WTB3_9CHLO3.870e-741.25Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig114contigP-littoralis_Contig114:39164..39756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog296587.XP_002499512.1
PFAMsNADH-u_ox-rdase
Model size255
Max annot lvl33090|Viridiplantae
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000111
EggNOG OGs2BS7Y@1|root,2S1Y3@2759|Eukaryota,37VDH@33090|Viridiplantae
Ec32 ortholog descriptionNADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal
Ec32 orthologEc-28_001960.1
DescriptionNADH-ubiquinone oxidoreductase 20.9 kDa
Cds size255
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789463.0422204-CDS-P-littoralis_Contig114:39163..392791680789463.0422204-CDS-P-littoralis_Contig114:39163..39279Pylaiella littoralis U1_48CDSP-littoralis_Contig114 39164..39279 -
1680789463.0561402-CDS-P-littoralis_Contig114:39617..397561680789463.0561402-CDS-P-littoralis_Contig114:39617..39756Pylaiella littoralis U1_48CDSP-littoralis_Contig114 39618..39756 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig114.11.2prot_P-littoralis_Contig114.11.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig114 39164..39756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig114.11.2

>prot_P-littoralis_Contig114.11.2 ID=prot_P-littoralis_Contig114.11.2|Name=mRNA_P-littoralis_Contig114.11.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
MAFEDPKFPVTDPAPGMSTVYGNLNATDLATITLATAGSAAWCFKGAVKG
IRGPNAVVGGALGLFGGLLLAGQSSFGRLTGQRK*
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mRNA from alignment at P-littoralis_Contig114:39164..39756-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig114.11.2 ID=mRNA_P-littoralis_Contig114.11.2|Name=mRNA_P-littoralis_Contig114.11.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=593bp|location=Sequence derived from alignment at P-littoralis_Contig114:39164..39756- (Pylaiella littoralis U1_48)
ATGGCGTTCGAGGACCCCAAGTTCCCGGTGACGGACCCGGCCCCAGGCAT
GTCCACTGTGTACGGCAACCTTAACGCCACGGATTTAGCGACGATCACGC
TGGCGACTGCGGGCTCGGCCGCCTGGTGCTTTAAGGGCGGTAAGATGGCA
GTTTTTATTTTTGTTGCTTTTTCCTGCGAAGACGTCATCGTATTCGCCTT
CCTTTAGACGAAGGCATATGTAGAACTAGATACGCGTGCGTCTGCGTTCT
GTGTAGACCACACCTTCCACCCAGCTTTCCTTCCATACTCTCTTTCTCGC
CACTCTACTGACTGCTTAAAAACTTCCTGTTCCGCCGTTTCGTTTTCTTT
TTTTTCTTTATTATGCTTTTTCCTCGTCGCCTGCTCCCCCACCCACACGC
CCGCCGTTGGGCGGGCGTGCGACACAAAAAACAACCGCCCTACAACCGCG
AACAATACACACGAACCGAAACGGAAGCAGTCAAGGGAATCCGCGGCCCG
AACGCGGTCGTGGGAGGCGCGCTGGGATTGTTTGGGGGCTTGTTATTGGC
CGGCCAGAGCTCGTTCGGACGGCTCACGGGGCAGAGGAAGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig114:39164..39756-

>mRNA_P-littoralis_Contig114.11.2 ID=mRNA_P-littoralis_Contig114.11.2|Name=mRNA_P-littoralis_Contig114.11.2|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig114:39164..39756- (Pylaiella littoralis U1_48)
ATGGCGTTCGAGGACCCCAAGTTCCCGGTGACGGACCCGGCCCCAGGCAT
GTCCACTGTGTACGGCAACCTTAACGCCACGGATTTAGCGACGATCACGC
TGGCGACTGCGGGCTCGGCCGCCTGGTGCTTTAAGGGCGCAGTCAAGGGA
ATCCGCGGCCCGAACGCGGTCGTGGGAGGCGCGCTGGGATTGTTTGGGGG
CTTGTTATTGGCCGGCCAGAGCTCGTTCGGACGGCTCACGGGGCAGAGGA
AGTAA
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