mRNA_P-littoralis_Contig114.82.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig114.82.1
Unique NamemRNA_P-littoralis_Contig114.82.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig114.82.1 vs. uniprot
Match: A0A6H5KJZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJZ7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 4.830e-5
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  460 ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 588
            ASA+KA+GK Y LWA   L+R C++R IPRMS++  K+ + +A
Sbjct:  133 ASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKDVLVQA 175
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BLAST of mRNA_P-littoralis_Contig114.82.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 6.090e-5
Identity = 29/68 (42.65%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:  394 VNGKGKGKARTESVGGRRNPHQ---ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 588
             +GK K  A   +VG R +      ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:  181 THGKRKASAGGSAVGNRNSTKASLGASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 248
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BLAST of mRNA_P-littoralis_Contig114.82.1 vs. uniprot
Match: D8LU04_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU04_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 6.310e-5
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  460 ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 588
            ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:  133 ASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 175
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BLAST of mRNA_P-littoralis_Contig114.82.1 vs. uniprot
Match: A0A6H5K825_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K825_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.220e-5
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  460 ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 588
            ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:  206 ASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 248
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BLAST of mRNA_P-littoralis_Contig114.82.1 vs. uniprot
Match: A0A6H5K6G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G9_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 7.340e-5
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:  400 GKGKGKARTESVGGRRNPHQ---ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 588
            GK K  A   +VG R +      ASA KA+GK Y LWA   L+R C++R IPRMS++  K+ + +A
Sbjct:  110 GKRKASAGGSAVGNRNSTKASLGASANKARGKDYPLWAAHLLRRTCAHRKIPRMSKKGDKDVLVQA 175
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BLAST of mRNA_P-littoralis_Contig114.82.1 vs. uniprot
Match: D8LJH4_ECTSI (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJH4_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 9.140e-5
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  460 ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 588
            ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:  133 ASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 175
[Close]
BLAST of mRNA_P-littoralis_Contig114.82.1 vs. uniprot
Match: D7FJ39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ39_ECTSI)

HSP 1 Score: 52.8 bits (125), Expect = 9.590e-5
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1 
Query:  460 ASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA 588
            ASA+KA+GK Y LWA   L+R C++R IPRMS++  K  + +A
Sbjct:   10 ASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQA 52
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig114.82.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KJZ7_9PHAE4.830e-551.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKV3_9PHAE6.090e-542.65Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
D8LU04_ECTSI6.310e-551.16Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K825_9PHAE7.220e-551.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6G9_9PHAE7.340e-543.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJH4_ECTSI9.140e-551.16Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
D7FJ39_ECTSI9.590e-551.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig114contigP-littoralis_Contig114:529768..530356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIC6
Model size589
Max annot lvl2880.D7FIC6|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.76e-05
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Cds size588
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789462.7763507-CDS-P-littoralis_Contig114:529767..5303551680789462.7763507-CDS-P-littoralis_Contig114:529767..530355Pylaiella littoralis U1_48CDSP-littoralis_Contig114 529768..530355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig114.82.1prot_P-littoralis_Contig114.82.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig114 529768..530355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig114.82.1

>prot_P-littoralis_Contig114.82.1 ID=prot_P-littoralis_Contig114.82.1|Name=mRNA_P-littoralis_Contig114.82.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp
AHVTTSSPPSSLGTSLQQRSPVSCGSVGVEIDVENDTALTATGTGGQARV
LETEAGAGTDSSSDGSNEVDADGGGVFSDEALEALLTACEGNGSKSPRSG
RESGESSVVDARSNLARSDVVDSSDDSSPTNVNGKGKGKARTESVGGRRN
PHQASAEKAKGKGYQLWALGFLQRACSYRDIPRMSQQKSKEAIAEA
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mRNA from alignment at P-littoralis_Contig114:529768..530356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig114.82.1 ID=mRNA_P-littoralis_Contig114.82.1|Name=mRNA_P-littoralis_Contig114.82.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=589bp|location=Sequence derived from alignment at P-littoralis_Contig114:529768..530356+ (Pylaiella littoralis U1_48)
GCACATGTTACCACATCCTCTCCGCCCTCAAGCCTCGGAACTTCTTTGCA
GCAGCGTTCACCGGTATCATGTGGGTCGGTAGGGGTGGAAATAGATGTTG
AGAACGACACTGCTTTGACGGCCACGGGCACCGGTGGTCAAGCTCGAGTG
CTCGAGACGGAAGCTGGAGCAGGCACCGACAGCAGCTCTGACGGCAGCAA
TGAGGTGGACGCTGACGGCGGAGGGGTGTTCTCGGACGAGGCACTTGAGG
CATTGCTGACAGCATGTGAGGGCAACGGAAGTAAGTCGCCAAGATCGGGG
CGCGAATCTGGCGAATCGAGTGTTGTTGACGCCAGGTCGAATTTGGCGCG
CTCCGATGTCGTCGACAGTAGCGACGACTCGTCCCCAACGAACGTCAATG
GCAAGGGAAAGGGGAAGGCGAGGACCGAAAGTGTCGGCGGAAGGAGGAAC
CCCCACCAGGCAAGTGCCGAAAAGGCAAAAGGGAAGGGATACCAGTTGTG
GGCCCTCGGCTTCTTGCAGCGAGCCTGCTCGTATCGTGACATCCCGAGAA
TGTCACAACAAAAATCGAAGGAGGCGATAGCGGAGGCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig114:529768..530356+

>mRNA_P-littoralis_Contig114.82.1 ID=mRNA_P-littoralis_Contig114.82.1|Name=mRNA_P-littoralis_Contig114.82.1|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig114:529768..530356+ (Pylaiella littoralis U1_48)
GCACATGTTACCACATCCTCTCCGCCCTCAAGCCTCGGAACTTCTTTGCA
GCAGCGTTCACCGGTATCATGTGGGTCGGTAGGGGTGGAAATAGATGTTG
AGAACGACACTGCTTTGACGGCCACGGGCACCGGTGGTCAAGCTCGAGTG
CTCGAGACGGAAGCTGGAGCAGGCACCGACAGCAGCTCTGACGGCAGCAA
TGAGGTGGACGCTGACGGCGGAGGGGTGTTCTCGGACGAGGCACTTGAGG
CATTGCTGACAGCATGTGAGGGCAACGGAAGTAAGTCGCCAAGATCGGGG
CGCGAATCTGGCGAATCGAGTGTTGTTGACGCCAGGTCGAATTTGGCGCG
CTCCGATGTCGTCGACAGTAGCGACGACTCGTCCCCAACGAACGTCAATG
GCAAGGGAAAGGGGAAGGCGAGGACCGAAAGTGTCGGCGGAAGGAGGAAC
CCCCACCAGGCAAGTGCCGAAAAGGCAAAAGGGAAGGGATACCAGTTGTG
GGCCCTCGGCTTCTTGCAGCGAGCCTGCTCGTATCGTGACATCCCGAGAA
TGTCACAACAAAAATCGAAGGAGGCGATAGCGGAGGCG
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