mRNA_P-littoralis_Contig114.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig114.55.1
Unique NamemRNA_P-littoralis_Contig114.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig114.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig114contigP-littoralis_Contig114:365840..366750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size911
Hectar predicted targeting categoryother localisation
Exons1
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789462.7186234-UTR-P-littoralis_Contig114:365839..3659161680789462.7186234-UTR-P-littoralis_Contig114:365839..365916Pylaiella littoralis U1_48UTRP-littoralis_Contig114 365840..365916 +
1680789462.7378185-UTR-P-littoralis_Contig114:366393..3667501680789462.7378185-UTR-P-littoralis_Contig114:366393..366750Pylaiella littoralis U1_48UTRP-littoralis_Contig114 366394..366750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789462.7294238-CDS-P-littoralis_Contig114:365916..3663931680789462.7294238-CDS-P-littoralis_Contig114:365916..366393Pylaiella littoralis U1_48CDSP-littoralis_Contig114 365917..366393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig114.55.1prot_P-littoralis_Contig114.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig114 365917..366393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig114.55.1

>prot_P-littoralis_Contig114.55.1 ID=prot_P-littoralis_Contig114.55.1|Name=mRNA_P-littoralis_Contig114.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=159bp
MKRTDADVIDDAIDRLVRFMICRLILLLDIELSGKVCVCVRARARARKCF
NTLALSNDLRAGRRFRQTAGAGRKRERNAHQQLDTSSLGRPFRQIEKFHG
PGEKRPCPHDKIIFTHAFLAARTYPPAPKYRSSCRFLQVNLCMCVTCMHV
IFSLSPHV*
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mRNA from alignment at P-littoralis_Contig114:365840..366750+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig114.55.1 ID=mRNA_P-littoralis_Contig114.55.1|Name=mRNA_P-littoralis_Contig114.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=911bp|location=Sequence derived from alignment at P-littoralis_Contig114:365840..366750+ (Pylaiella littoralis U1_48)
GTTGTTCAAGGGAATGAAATCGAAGCAGCTGGCTGGACAGGTGCGTGCGC
GCCGCATCTTCAGATCGAGAGAGAGGAATGAAGCGAACAGATGCTGACGT
GATCGATGATGCGATTGATCGTTTAGTCCGTTTTATGATTTGTAGGCTGA
TTTTGCTTCTCGACATTGAACTGTCCGGGAAGGTGTGCGTGTGTGTACGC
GCGCGCGCTCGTGCGCGCAAATGTTTTAACACTCTCGCCTTATCGAATGA
CCTACGTGCGGGAAGGCGTTTCCGACAGACAGCGGGGGCAGGGAGAAAGA
GAGAGCGAAACGCACACCAACAGCTTGACACGTCGTCGCTGGGCCGACCT
TTCCGTCAAATAGAAAAGTTTCACGGGCCGGGAGAGAAACGACCGTGCCC
TCACGACAAAATTATTTTTACTCATGCCTTCCTTGCCGCTCGGACCTATC
CCCCGGCCCCGAAATATCGCTCATCTTGCCGGTTTCTTCAGGTCAATTTA
TGCATGTGCGTCACATGCATGCATGTGATCTTCTCACTTTCTCCACACGT
GTAGTACTGCTGTCTTCCCTCCTCCCAACCGTGCCTCATCTTTGTCTTCT
TCCCGCTTGACGAGGCGCTCGCTTCGTTGTGTCACACCACCGGCACCCGG
GGATCTTATCCGCCGGAAATGTCTACAGCAGTATCATAGTACTGCGGTAT
AGAGTTGCCCGCCCGAAGAGGAAACTGAAGAAATGCGTGTGAAGCCCCCC
TACCCCAACTCCAGGCGGTGACGGTTACGCAAACGAAAGGCGATGTGTGT
AAAAATCAATGATACGCACACGCGCCCTGGAGATGAGTATATCCCCCCGG
GGACGCTGCGTATCATAGTGTTGTGCTCACACCGTCTGTGATGTTGTCGA
ATCATATTCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig114:365840..366750+

>mRNA_P-littoralis_Contig114.55.1 ID=mRNA_P-littoralis_Contig114.55.1|Name=mRNA_P-littoralis_Contig114.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=477bp|location=Sequence derived from alignment at P-littoralis_Contig114:365840..366750+ (Pylaiella littoralis U1_48)
ATGAAGCGAACAGATGCTGACGTGATCGATGATGCGATTGATCGTTTAGT
CCGTTTTATGATTTGTAGGCTGATTTTGCTTCTCGACATTGAACTGTCCG
GGAAGGTGTGCGTGTGTGTACGCGCGCGCGCTCGTGCGCGCAAATGTTTT
AACACTCTCGCCTTATCGAATGACCTACGTGCGGGAAGGCGTTTCCGACA
GACAGCGGGGGCAGGGAGAAAGAGAGAGCGAAACGCACACCAACAGCTTG
ACACGTCGTCGCTGGGCCGACCTTTCCGTCAAATAGAAAAGTTTCACGGG
CCGGGAGAGAAACGACCGTGCCCTCACGACAAAATTATTTTTACTCATGC
CTTCCTTGCCGCTCGGACCTATCCCCCGGCCCCGAAATATCGCTCATCTT
GCCGGTTTCTTCAGGTCAATTTATGCATGTGCGTCACATGCATGCATGTG
ATCTTCTCACTTTCTCCACACGTGTAG
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