mRNA_P-littoralis_Contig1139.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1139.3.1
Unique NamemRNA_P-littoralis_Contig1139.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1139.3.1 vs. uniprot
Match: D7FJZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ7_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.710e-22
Identity = 100/224 (44.64%), Postives = 113/224 (50.45%), Query Frame = 2 
Query:   71 MDCVPELAVTKRKMISSSKMAKRLRRLSSHRMWNVSRVREHSQSHPPAAVQPAVKARKAHPRTAPRFVRDNQPPDVSPNSGYDGENGTPAFARSCGKAASFRELLCRIPEETLFQLQQIYEALEEPVGGAGNGHGGIRRKSTSSLPRST-LPTAPFGDHMEDEQSGPDGGSGSVVHTPHRRSK-KRARGEEEPATASKAERIED--SSPMQRKKXKARRKSNAT 730
            MDC+PEL V KRK ISS+KMAKRLR                                        RFV +NQ PD     G DG+ G      +   AAS  ELLCRIPEETLFQLQQIYEALE        G  G+  K  SS P  T L  A  GD  E E     GG+ + V TP + +K KR RG EEPATASKA       +SP  +KK K+RRKSNAT
Sbjct:    1 MDCLPELVVAKRKTISSAKMAKRLR----------------------------------------RFVGENQRPDAP--EGGDGDVGDDDVQTATKPAAS-GELLCRIPEETLFQLQQIYEALE--------GASGV--KPASSAPSLTDLIAASAGDGGEAEPM--SGGTEASVVTPEKTTKQKRVRGGEEPATASKASGGSSIGTSPKIKKK-KSRRKSNAT 168
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BLAST of mRNA_P-littoralis_Contig1139.3.1 vs. uniprot
Match: A0A6H5JU48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU48_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 5.170e-15
Identity = 73/178 (41.01%), Postives = 83/178 (46.63%), Query Frame = 2 
Query:   71 MDCVPELAVTKRKMISSSKMAKRLRRLSSHRMWNVSRVREHSQSHPPAAVQPAVKARKAHPRTAPRFVRDNQPPDVSPNSGYDGENGTPAFARSCGKAASFRELLCRIPEETLFQLQQIYEALEEPVGGAGNGHGGIRRKSTSSLPRST-LPTAPFGDHMEDEQSGPDGGSGSVVHTP 601
            MDC+PEL V KRK ISSSKMAKRLR                                        RFV +NQ PD     G DG+ G      +  K A+  ELLCRIPEETLFQLQQIYEALE        G  G+  K  S  P  T +  A  GD+ E E   P GG+ + V TP
Sbjct:    1 MDCLPELVVAKRKTISSSKMAKRLR----------------------------------------RFVGENQRPDAP--EGGDGDVGDDDVTNAT-KPAATGELLCRIPEETLFQLQQIYEALE--------GASGV--KPASRAPSLTDIIAASAGDNGETE---PSGGNEASVVTP 122
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1139.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJZ7_ECTSI1.710e-2244.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JU48_9PHAE5.170e-1541.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1139contigP-littoralis_Contig1139:21956..26933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1561
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_003050.1
Cds size672
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1139.3.1prot_P-littoralis_Contig1139.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1139 22017..26105 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789462.2629006-UTR-P-littoralis_Contig1139:21955..220161680789462.2629006-UTR-P-littoralis_Contig1139:21955..22016Pylaiella littoralis U1_48UTRP-littoralis_Contig1139 21956..22016 +
1680789462.3083556-UTR-P-littoralis_Contig1139:26105..269331680789462.3083556-UTR-P-littoralis_Contig1139:26105..26933Pylaiella littoralis U1_48UTRP-littoralis_Contig1139 26106..26933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789462.273001-CDS-P-littoralis_Contig1139:22016..221021680789462.273001-CDS-P-littoralis_Contig1139:22016..22102Pylaiella littoralis U1_48CDSP-littoralis_Contig1139 22017..22102 +
1680789462.2811537-CDS-P-littoralis_Contig1139:23683..238031680789462.2811537-CDS-P-littoralis_Contig1139:23683..23803Pylaiella littoralis U1_48CDSP-littoralis_Contig1139 23684..23803 +
1680789462.289397-CDS-P-littoralis_Contig1139:24366..247151680789462.289397-CDS-P-littoralis_Contig1139:24366..24715Pylaiella littoralis U1_48CDSP-littoralis_Contig1139 24367..24715 +
1680789462.3000991-CDS-P-littoralis_Contig1139:25988..261051680789462.3000991-CDS-P-littoralis_Contig1139:25988..26105Pylaiella littoralis U1_48CDSP-littoralis_Contig1139 25989..26105 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1139.3.1

>prot_P-littoralis_Contig1139.3.1 ID=prot_P-littoralis_Contig1139.3.1|Name=mRNA_P-littoralis_Contig1139.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=224bp
MVAMDCVPELAVTKRKMISSSKMAKRLRRLSSHRMWNVSRVREHSQSHPP
AAVQPAVKARKAHPRTAPRFVRDNQPPDVSPNSGYDGENGTPAFARSCGK
AASFRELLCRIPEETLFQLQQIYEALEEPVGGAGNGHGGIRRKSTSSLPR
STLPTAPFGDHMEDEQSGPDGGSGSVVHTPHRRSKKRARGEEEPATASKA
ERIEDSSPMQRKKKKARRKSNAT*
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mRNA from alignment at P-littoralis_Contig1139:21956..26933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1139.3.1 ID=mRNA_P-littoralis_Contig1139.3.1|Name=mRNA_P-littoralis_Contig1139.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4978bp|location=Sequence derived from alignment at P-littoralis_Contig1139:21956..26933+ (Pylaiella littoralis U1_48)
CCCCCACACACCACTCCGACTCCTGCCCACGCGTCCCTGGTCTCCTTGCC
TCTGGGCTATCATGGTCGCCATGGACTGCGTGCCAGAGCTGGCCGTGACT
AAAAGAAAAATGATTTCCAGTTCGAAAATGGCCAAGCGATTACGCAGGTG
AGTTGTACGTCGAACGAATGTTCATTTTCTGTCATATTATCACCAGCCGC
AGAGAACCTGCCCTTCTCTCTGATTTTGTGATTTGGATGCTGTGGCGGTA
GGTTCTGCGTGTGAGTGGCTCTCATCCTGTCTCCATATCGGAGGTCATGG
TTTCGTGTTGGACATCCATCTGTTGTCCTCGCATTACTGCTGGTTCATGT
TACGATGCGACGCAAGACTGGATTCCTTTGCCTCCTTCGCGTCTGCCATG
CCCCTCGAAAGCAGGTGGCCCTGCAGCCAGCCGCCCGTTATTATATCCCG
CAAACGCGGAGCTCACGCAGTCCACACGTCACAGCGGTCAGTTTATCACA
ATCCGATGTCGTTCTCGTCGTCCTCCCCACAGGGCTACTCGCACTGCGTG
TGACTGAAAGACCTTGCGGTGCTTGGATCACACAGCAGTGCGTACTTCAT
TTGTTCTTCATACCGTCAAAAGTGACAACTACAGAAGCACCCACAGGACG
ACACTCATCCAGCATATACAGACCTTAGTTACTCAGCGCATGATATACGT
ATGTGACCCGAAGAGGACCTCCAAATTATATTGTTGAGCGCATCACACGG
CTATCCTCAGGGGATCCTCAGAGGAGCCGGGACGGCGTCTCAGTTCAGGG
GTAACACCAACGCCCACATTCACCTGGTTAGACGGCCACAGTACCATAGT
TTTTTTTTCGTTCAGTGCACTGCGGAAACAACTGCCCACAGAGTGGCGGT
GATTCGAACTCGAGTAACTGTACAAGCGCTCTGGGGCTGCTGAGTTCTTT
TTGTTGCTCGGCGTTCTCCCGCTACCGGGAGAATACTCGAGAAGACGTGT
GTGCACACGTCCGCCTCGGAATCTTCTCCTGGCAGCGGGAGAAGCCAGAG
GAGGATCGAAGACATCAGCAGGCTCAGCGTACAGGTGGAAGGTGGACTTG
GGTTTGAATCAACGTTTTATGTTCAACGGTACAAAGCCATATACTCCGGA
GTATCTCCCATCTACTTTTGTTCGCGTTCGCCTCTCAAGGGGGTTTATCT
ACTCGATACTCTCATCTGGCGAGAGGCGCATGCACCCACATCAGAGTTTT
AGTGTTTTTATGTCCCTACAGTAACAGAAAATGATAAAAATAAAACGAGA
CTTCCCATCATTTTCCTCATGACACGACTCAGCAGCACTCACATTTTACA
ACGTTCGCTGCAAAGACGGCTCCCAACTACAACTGGATCGAAACAAAAAA
TAGGAGTACTTCGTAAATAGCTTGAAAGAGGGCGAAAATCAGTACGCTGG
CACGCCGCATGCGACAAATCAATCGCGGCAGGTTTCACAGATGTAGTTTT
GGTAACATGGCTGAAACTTACTCTTGTGCATAAACAGAGGTTAGTGTTTC
TAGCCCATATGCTCTCAACAGCCCTGCCACAGAAAAATACAATTGGAAAA
ATAGGAAAGAGCGATGCGCTCTTCATTTTAAATTTCAATATTTAAAATTT
AAAATTCGGGTTTTTGCGTGTTTTCTTCTCCTTGTTTTTGGGAAAATCCG
CCACGCCATCAACTCAAACGTCAACAAGGCTTTCCTCCCACCGGATGTGG
AATGTTTCCCGGGTTCGTGAACACTCTCAAAGCCACCCACCAGCAGCAGT
TCAGCCAGCAGTTAAAGCAAGAAAAGCGCACCCGCGAACAGCACCCCGGT
GAGCGAATCCACCCCTGTTTTGAAACGTTTCAAAATGGTGTGGCCGACAT
GGGTGAAACAGACTGCGGGCATGGCGAAGAATTTGCAGAAGCCCTTTTTG
CTGCGCTGTTTGTCATCCCTCAATGAGCGTATCTGATCGGAAAATAAAAA
TGCGCATGGCACGTGGATGGAACTTCGAATTCTTCTTACCTCGTCTCTTT
TTGGCCAACGAAAATTTTTTTCCTGGAAAATGGTGCGGCCGTCGGAGATT
GTCGCGTCGTCCGCTCAGCCCAAGTAATAATTTCGTTCCTTGAAATTGAC
CAAAACCCCACATGGAACGGGTCCCTCGGTGAAAAACTCCGCCTAACGCC
GTGCGCGTGACCATTGAGCCCTCTCGTGTCTTACGAATATAGTTGCCGTG
CAGCAGCAGCGACAACGCATCAGCAAACCAATCAACACGTACACAGTCAC
ATCTCGTTCCTTTTTCACGTCCCTCCACCTTGTTCATATTTTTGTTCAAG
ACGACCCCCACGACTACTGTCTTTCACACCCCCCTCTCGTTGTCACCACC
GCGCAAGACAGGTTTGTTCGCGACAACCAACCGCCGGACGTATCTCCCAA
TTCCGGCTACGACGGCGAAAATGGCACGCCCGCCTTCGCGAGAAGTTGTG
GAAAGGCAGCCTCTTTTAGGGAACTTCTGTGCCGCATTCCGGAGGAGACG
CTGTTCCAGCTGCAGCAGATCTACGAAGCTCTCGAGGAACCCGTCGGCGG
GGCGGGGAATGGTCATGGCGGCATCAGAAGAAAGTCGACGTCCAGTTTGC
CGAGGTCGACCCTCCCGACTGCTCCTTTCGGCGATCACATGGAGGACGAG
CAAAGCGGACCAGATGGCGGCAGTGGCTCCGTTGTACACACTCCGCACAG
GAGGTCCAAGGTACACATCACAAGCTAGTTTGTCTCTCTAATTTGTTTTC
GTTCGTGGTTGTGGTATCTTCCACTCGCTCTTCGTCTCTCTGTATGCGCT
TTCTTGCCAGCCGCGACTGTCGACCCTGCCATTCGCGTCAGCTCTTCTGT
TTGCCCAATACTTTTTGACGGTATCTTTTCCCCCCTGCTGCCAAGGGTAC
ATGGTGGTTTAATACGCCGTCTTGGATTGATTTGCCACCAAAACTGTAGG
AAACCGCACACATTGTGTGTTGTGTTGTCATCCCATATCCTCTGGCACAC
TAGTCTGCACCCTGCGGTTCAAACTACAGGCTAGGCCCATCGACGGGGTC
ACACAGGAGGAAGGTCAACACAGGAGGAGTAACCCCCACCTTCCTTCTGC
TGTACGTGCGTGAGATTTTTTCTCGCGAGCAGGGATCCGCGGTCCCTACC
CTCGTCGGTGAAGCCGAATCTGCTTTTACTAACAGCATAGCCGCTTTCAA
AGTAGCAAAGGAACACATTCACCGGGAATCGAACCCCCGTTCCTCTGCAT
CTAGTGGTTAATGAGGGGACCACTAGTCCACCGGGGCGACCGGTGGTATG
TATCTACGATTTACGTGATTCCAGCAAGTGTATCATAAGCGCGTGGAGTT
AAACTTGTAGTTCGTCATATCAGTAGTAAATGGCATTCCTTTGGGATAAT
TAGAAAAAAAACCAAACCTTGTCAAATTCTCTTCACTCCTGACCATGAGT
GATAGAAGCCGGTGCTTTGGAAAATAAAACCTTTTTGATTCGGTTCGGAC
ACTAGGCGCAGGCTCAAAATCACCGCAGACCGTGACGCAGCAATGCGCCG
CTACTTGCAAAGATCCATGGGGTCTGCTCTCCGTTCTGGCCCACATTAAT
TTCGGATCAAGGGTTCTTTTGTAATTTGGCGTCGCAGCATGGGTACTTGG
TGTTGTGTGTGTTCCTTCTGCTCGTAGGTATGTGGTGTCTCATCAGTATA
CCCATTTACTCTGAACGAAATATATGCCCGTTTTAGTTCGGCACTGATTT
ATCACATAATTGTTTCCAAGGGGAATTTTTTTCTGTGGACCGAGACTTAT
TCTGTCTGTGAAAGGCTCGAGTTAGCCCAGGTGGGCAAGAAACCCCCACC
TTTACTCACATATTCGCTTTGTCGGTAACACGAAGATTTTCCCTCTTCGT
TCCGAAATCAGTCTCATTCCTTCATCATGCTGTGTCCTGAACCTATCACC
GTCGTCGCTGCTTTTTTCTGCTGACGCCACCAGAAGAGAGCAAGAGGGGA
AGAAGAGCCTGCCACTGCCAGCAAGGCCGAGCGTATCGAAGATTCAAGTC
CGATGCAAAGGAAGAAAAAGAAGGCTAGAAGAAAAAGCAACGCGACATGA
CATTATTTTTTAGATGAGAACGGAAAGGTGGCACGCAGTCTCCGGTTGTA
CTCTCTTCTATGTATCATAGCGAGAGAACCATTGCTCGGGTGGTAGGTTG
CGGCACGTCGATGAAATCATGTTACCTTTTCTCCGTGTCTTGCATGGTCT
TTCATCCTGTTTTCATATATTTTTAGGCGTGCGTGCACGCACGAGGAGGG
CTGGTAGAAATAGTCTAGCTTTTTTGCAGTGCGATTCTAGAAGATCTAGG
TTAGTGTATAAAGGCGATTGTCAATAGCGGTAGGAAGGTAGGTGCCCATG
AAGGTTTCCCCGAAACGTTTTATGCTACCGTAAAAGTGCGCTGAAAACGT
GGGTGACTTCAGGAGCTTGTTGGGGACACGCACACGCACTGCTCCGAAAG
GATTTTGGTTCAGCGCGTGGGGCAAGTGTCGAAGTGGATTTTTCACTGTT
CTCGTTCTCGTTATCCTTAGTCCCGATGTACACAAAGTGTTGAGAAGTAT
AATTTCAATCATGATGGTCGAATTTTTCTCTATCCATGGCGAGTGCGAGT
CATTTCCCTCCACCACAAGGGCTACGGGAAGCAAATTATACAGCCTTTCG
TTTGCTACACCCTCGTCTCTGTGTGGTGTAGACACGCCTGCGGATTGTTG
TATTACTGTACAGAAGGCGTTTTTCACCCCAGTTATGAGAGGAACAAGTT
CTTTCACATCTTTGCTGTGTGTTGAGTGCCGAAGGCAGACGCCCCTGGTT
TCTTCCTGCATGCCTCGCAAATATAGTATGTGCCGTACGCTGCTTGACCC
ACGCCATCATGTCGGTGTTGGCTTCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1139:21956..26933+

>mRNA_P-littoralis_Contig1139.3.1 ID=mRNA_P-littoralis_Contig1139.3.1|Name=mRNA_P-littoralis_Contig1139.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=672bp|location=Sequence derived from alignment at P-littoralis_Contig1139:21956..26933+ (Pylaiella littoralis U1_48)
ATGGTCGCCATGGACTGCGTGCCAGAGCTGGCCGTGACTAAAAGAAAAAT
GATTTCCAGTTCGAAAATGGCCAAGCGATTACGCAGGCTTTCCTCCCACC
GGATGTGGAATGTTTCCCGGGTTCGTGAACACTCTCAAAGCCACCCACCA
GCAGCAGTTCAGCCAGCAGTTAAAGCAAGAAAAGCGCACCCGCGAACAGC
ACCCCGGTTTGTTCGCGACAACCAACCGCCGGACGTATCTCCCAATTCCG
GCTACGACGGCGAAAATGGCACGCCCGCCTTCGCGAGAAGTTGTGGAAAG
GCAGCCTCTTTTAGGGAACTTCTGTGCCGCATTCCGGAGGAGACGCTGTT
CCAGCTGCAGCAGATCTACGAAGCTCTCGAGGAACCCGTCGGCGGGGCGG
GGAATGGTCATGGCGGCATCAGAAGAAAGTCGACGTCCAGTTTGCCGAGG
TCGACCCTCCCGACTGCTCCTTTCGGCGATCACATGGAGGACGAGCAAAG
CGGACCAGATGGCGGCAGTGGCTCCGTTGTACACACTCCGCACAGGAGGT
CCAAGAAGAGAGCAAGAGGGGAAGAAGAGCCTGCCACTGCCAGCAAGGCC
GAGCGTATCGAAGATTCAAGTCCGATGCAAAGGAAGAAAAAGAAGGCTAG
AAGAAAAAGCAACGCGACATGA
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