mRNA_P-littoralis_Contig1138.8.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1138.8.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE) HSP 1 Score: 364 bits (934), Expect = 1.760e-119 Identity = 188/211 (89.10%), Postives = 196/211 (92.89%), Query Frame = 2
Query: 215 LALPVTPMTFSDCSAFKGAALTTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAIAGHLTAQNTRLPGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 847
LA + F SAF GAA+ TPAKSSSAMKMSFESEIGAQ PLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLAIAGHLT QN RLPGMLSNSA LSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASY+FN
Sbjct: 8 LACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
BLAST of mRNA_P-littoralis_Contig1138.8.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE) HSP 1 Score: 358 bits (918), Expect = 4.960e-117 Identity = 182/200 (91.00%), Postives = 190/200 (95.00%), Query Frame = 2
Query: 248 DCSAFKGAALTTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAIAGHLTAQNTRLPGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 847
D SAF GAA+ T AKSSSAMKMSFESEIGAQ PLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLAIAGHLT QN RLPGMLSNSA LSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y+FN
Sbjct: 22 DVSAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
BLAST of mRNA_P-littoralis_Contig1138.8.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY) HSP 1 Score: 357 bits (915), Expect = 1.210e-116 Identity = 182/202 (90.10%), Postives = 191/202 (94.55%), Query Frame = 2
Query: 242 FSDCSAFKGAALTTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAIAGHLTAQNTRLPGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 847
F SAF GAALTT AK+ SAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLAIAGHLT QNTRLPGMLSNSA LSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPF +SWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASY+FN
Sbjct: 16 FRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
BLAST of mRNA_P-littoralis_Contig1138.8.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY) HSP 1 Score: 355 bits (910), Expect = 5.530e-116 Identity = 181/198 (91.41%), Postives = 187/198 (94.44%), Query Frame = 2
Query: 254 SAFKGAALTTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAIAGHLTAQNTRLPGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 847
SAF GAAL+TPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLAIAGHLT QNTRLPGMLSNSA LSFADMPNGVAALSKIPP GLAQIF F+GFLELAVMKNVEGSFPGDF GGNPFASSWD+MS ETQ SKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASY+FN
Sbjct: 14 SAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
BLAST of mRNA_P-littoralis_Contig1138.8.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI) HSP 1 Score: 353 bits (905), Expect = 9.340e-113 Identity = 178/197 (90.36%), Postives = 187/197 (94.92%), Query Frame = 2
Query: 257 AFKGAALTTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAIAGHLTAQNTRLPGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 847
AF GAA+ TPAKSSSAMKMSFESEIGAQ PLGFWDPLGLL DADQERFERLRYVE+KHGRIAMLAIAGHLT QNTRLPGMLSNSA LSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPF SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y+FN
Sbjct: 181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
BLAST of mRNA_P-littoralis_Contig1138.8.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY) HSP 1 Score: 344 bits (882), Expect = 1.050e-111 Identity = 176/198 (88.89%), Postives = 185/198 (93.43%), Query Frame = 2
Query: 254 SAFKGAALTTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAIAGHLTAQNTRLPGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 847
SAF GAALTT AKSSSAMKMSFESEIGAQAPLGFWDPLGLL DADQ+ FERLRYVE+K GRIAMLAIAGHLT QN RLPGMLSNSA LSFADMPNGVAALSKIPP GLAQIF F+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMS ETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY+FN
Sbjct: 19 SAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
BLAST of mRNA_P-littoralis_Contig1138.8.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY) HSP 1 Score: 335 bits (860), Expect = 6.280e-109 Identity = 167/182 (91.76%), Postives = 175/182 (96.15%), Query Frame = 2
Query: 302 AMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAIAGHLTAQNTRLPGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 847
AMKMSFE EIGAQAPLGFWDPLGLLADADQERFERLRYVE+KHGRIAMLAIAGHLT QN RLPGMLSNSA LSFADMPNGVAALSKIPP GLAQIF F+GFLELAVMKNVEGSFPGDFT GGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY+FN
Sbjct: 1 AMKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
BLAST of mRNA_P-littoralis_Contig1138.8.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE) HSP 1 Score: 332 bits (852), Expect = 9.580e-108 Identity = 165/181 (91.16%), Postives = 173/181 (95.58%), Query Frame = 2
Query: 305 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAIAGHLTAQNTRLPGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 847
MKMSFESEIGAQ PLGFWDPLGLL DADQERFERLRYVE+KHGRIAMLAIAGHLT QNTRLPGMLSNSA LSFADMPNGVAALSKIPPAGLAQIFAF+GFLELAVMKNVEGSFPGDFT GGNPF SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y+FN
Sbjct: 1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
BLAST of mRNA_P-littoralis_Contig1138.8.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY) HSP 1 Score: 302 bits (774), Expect = 1.280e-95 Identity = 155/196 (79.08%), Postives = 166/196 (84.69%), Query Frame = 2
Query: 260 FKGAALTTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEIKHGRIAMLAIAGHLTAQNTRLPGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 847
F GAAL T AKSSSAMKMSFESEIGAQ P+GFWDPLGL+ADADQERF+RLRYVEIKHGRIAMLA+ GH+T QNTRLPGMLS L+FAD PNGVAA SKIPP G QI +G EL V+K VEGSFPGD T GGN F S+WD MSEETQ SKRAIELNNGRAAQMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct: 17 FNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212
BLAST of mRNA_P-littoralis_Contig1138.8.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE) HSP 1 Score: 283 bits (724), Expect = 2.890e-88 Identity = 147/206 (71.36%), Postives = 162/206 (78.64%), Query Frame = 2
Query: 305 MKMSFESEIGAQAPLGFWDPLGLLADA-------------------------DQERFERLRYVEIKHGRIAMLAIAGHLTAQNTRLPGMLSNSAGLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYSFN 847
MKMSFESE+GAQ PLGF+DPLGLL D DQERF+RLRYVE+KHGRI+MLA+AGHL AQN R PG LS A L+FADMPNGVAA+SKIPP GLAQI AF+GFLEL VMKNVEGSFPGD T GGNPFA+ WDAMSEET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A Y+FN
Sbjct: 1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1138.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1138.8.1 >prot_P-littoralis_Contig1138.8.1 ID=prot_P-littoralis_Contig1138.8.1|Name=mRNA_P-littoralis_Contig1138.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=205bp MTFSDCSAFKGAALTTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADAback to top mRNA from alignment at P-littoralis_Contig1138:18979..20980+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1138.8.1 ID=mRNA_P-littoralis_Contig1138.8.1|Name=mRNA_P-littoralis_Contig1138.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2002bp|location=Sequence derived from alignment at P-littoralis_Contig1138:18979..20980+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1138:18979..20980+ >mRNA_P-littoralis_Contig1138.8.1 ID=mRNA_P-littoralis_Contig1138.8.1|Name=mRNA_P-littoralis_Contig1138.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=615bp|location=Sequence derived from alignment at P-littoralis_Contig1138:18979..20980+ (Pylaiella littoralis U1_48)back to top |