mRNA_P-littoralis_Contig1138.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1138.14.1
Unique NamemRNA_P-littoralis_Contig1138.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1138.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1138contigP-littoralis_Contig1138:40369..41202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size223
Hectar predicted targeting categoryother localisation
Exons3
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789461.8991473-CDS-P-littoralis_Contig1138:40369..403931680789461.8991473-CDS-P-littoralis_Contig1138:40369..40393Pylaiella littoralis U1_48CDSP-littoralis_Contig1138 40370..40393 -
1680789461.9107184-CDS-P-littoralis_Contig1138:40731..408461680789461.9107184-CDS-P-littoralis_Contig1138:40731..40846Pylaiella littoralis U1_48CDSP-littoralis_Contig1138 40732..40846 -
1680789461.9236963-CDS-P-littoralis_Contig1138:41119..412021680789461.9236963-CDS-P-littoralis_Contig1138:41119..41202Pylaiella littoralis U1_48CDSP-littoralis_Contig1138 41120..41202 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1138.14.1prot_P-littoralis_Contig1138.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1138 40370..41202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1138.14.1

>prot_P-littoralis_Contig1138.14.1 ID=prot_P-littoralis_Contig1138.14.1|Name=mRNA_P-littoralis_Contig1138.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
PLFSSTGARRYSAPVWRSPERVEFHSKSDQNAIDDVVYAWREKLTLFSRQ
QQQNQNEIPDGATKQAPILSKAGR
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mRNA from alignment at P-littoralis_Contig1138:40369..41202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1138.14.1 ID=mRNA_P-littoralis_Contig1138.14.1|Name=mRNA_P-littoralis_Contig1138.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=834bp|location=Sequence derived from alignment at P-littoralis_Contig1138:40369..41202- (Pylaiella littoralis U1_48)
CCGCTTTTTAGTTCCACTGGGGCTCGAAGGTACTCGGCCCCGGTTTGGCG
CTCGCCTGAAAGGGTCGAGTTTCATTCGAAAAGGTGAGCGAGTCAAGTAG
ATCGTTGAAGGACACCATAAACCTCAATAATTTGCTTTGTGTTACCATGA
ACCTCAAACATTTTGTCGAGTGTGGTGGATGGAGCAAGTCTCGAAGCGTA
GACAATACCCTACCGGGGCCACGGCCGTGTGGTTGCTCTGGATTTTGACA
CACAAGCAAGCATTGTATACGCAATCAAGTGAGACACGAGCCCGCAATCC
CTTGGATTCGTGTCCTACCCTCTACCTTTCCCGCGTCCGTGATCTGCTAT
TGGCAGCGACCAGAATGCAATTGACGACGTGGTCTACGCCTGGCGCGAAA
AGTTGACCTTGTTCTCGAGGCAGCAGCAGCAAAACCAAAACGAAATCCCC
GACGGCGCCACGAAGCAAGCGGTAAGGAGAAAGCACAGCACTGCACCATT
GAATGGTCGCGGAAATATTTATTTTTTTGTTGCATTTTCATGCAATCGCA
AAGCAACACCGGCTCTTTTTTCGGAGGCTTAGGTAAGACACGAAGCCATT
CAAACAGTACATTCGACTGCAACGTGGACGAAGCATCTCAGGCCAGCAAA
TAAAAGGCAGTGCAACTCATGACAATCGACCTGGCGAGTGTACGACGTTA
TTTGACGGTTCTTTGTGTGTACCTTATTTAAGCTGCTGGAGCACAACGGA
GCTCTGTTGATCAGTCTCCCGCACCCTTCCTTCCACCCTATTCTTCACTC
TCCCCCCAGCCCATCCTGAGCAAAGCCGGACGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1138:40369..41202-

>mRNA_P-littoralis_Contig1138.14.1 ID=mRNA_P-littoralis_Contig1138.14.1|Name=mRNA_P-littoralis_Contig1138.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig1138:40369..41202- (Pylaiella littoralis U1_48)
CCGCTTTTTAGTTCCACTGGGGCTCGAAGGTACTCGGCCCCGGTTTGGCG
CTCGCCTGAAAGGGTCGAGTTTCATTCGAAAAGCGACCAGAATGCAATTG
ACGACGTGGTCTACGCCTGGCGCGAAAAGTTGACCTTGTTCTCGAGGCAG
CAGCAGCAAAACCAAAACGAAATCCCCGACGGCGCCACGAAGCAAGCGCC
CATCCTGAGCAAAGCCGGACGG
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