mRNA_P-littoralis_Contig1137.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1137.1.1
Unique NamemRNA_P-littoralis_Contig1137.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1137.1.1 vs. uniprot
Match: A0A835YMJ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMJ3_9STRA)

HSP 1 Score: 111 bits (278), Expect = 5.260e-22
Identity = 113/390 (28.97%), Postives = 171/390 (43.85%), Query Frame = 3 
Query:  981 VKPMLTRELCNLSPGRSFSVDATFRLAKVSTGDASCIVFLLGEFGHIIAWAAPRSDKWSNLLPVLHALRKRLDRLGTLLDLEKVFADTCCEGKKNVLAHVCVDIFPNVTKTPYADLFHKVQ-ILSTHTLSAHPLHASFTREVGACIAKKYQPDVYRVAGSIIRSRDVTAERAMEL--------AMNSRYRRHIRTF--TASDCAARLWIVYEKFKKLSDECV------ERGERPLYQDRRGTS*STTSAFKNVTGCVDKGCIAMGDVMETYVCDTF---GAKTELAHLKKLGVTGGNEAAHSQANGRIATIASRMSEARTEREISLWVHDYNRSCDEHRGIAKPYFLRHFWEEERIRTLSANVQGPSPGGNLMIPPELGEADMELMGYDY 2090
            +KP L  +L    PG   S D TF++A   T  A+ + F+LG    ++A+AA + D ++ ++P+   LR+RL+ +G L D++ V++D CCE + +        IFP   +  + D +H +  ++   T S HP   +F   VG  I   +Q DV  +    I   D   ++   L        A+N  Y   +RT     S  AA L  V+ KF K   E        ER  RP  +D+  +  ST   F+N   C DKGC+   D +      T      KT+    + +G T  NEA HS+ N  +  I+   +++   R + L V  +NR  D   G    +      E     T  A   G  P      PPE      E MG+DY
Sbjct:   67 IKPYLLADLVRRDPGCCISGDGTFKIAGRVTSSATVLHFILGADHCVVAFAAVKGDGFTPVIPLYMQLRRRLEAMGKLFDVQAVYSDRCCEQRNDPSTAPQAVIFPGCRRV-WGDGWHAINTLIEATTRSNHPDLQAFAAAVGKAIRVPHQEDVEALKRLFI---DQARQQGQMLHPDVAELRALNRGYAESVRTVGPPGSVIAANLRRVFAKFDKNDGERPDSKAPPERLYRPSGRDK--SQRSTEEVFENTIRCADKGCLT--DPLPFPRMHTLLRVMPKTKRPIYRSVGQTVKNEALHSKVNKLVDGISKVGADSMNSR-LLLRVFAHNRQRDVEWGRCSAH------EPCPWITARALCPGAEP------PPE----PQERMGWDY 431
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1137.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YMJ3_9STRA5.260e-2228.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1137contigP-littoralis_Contig1137:7565..12548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size3054
Hectar predicted targeting categoryother localisation
Exons12
Cds size1335
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1137.1.1prot_P-littoralis_Contig1137.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1137 7565..9481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789461.6711152-CDS-P-littoralis_Contig1137:7564..81301680789461.6711152-CDS-P-littoralis_Contig1137:7564..8130Pylaiella littoralis U1_48CDSP-littoralis_Contig1137 7565..8130 -
1680789461.6798933-CDS-P-littoralis_Contig1137:8273..85551680789461.6798933-CDS-P-littoralis_Contig1137:8273..8555Pylaiella littoralis U1_48CDSP-littoralis_Contig1137 8274..8555 -
1680789461.6883056-CDS-P-littoralis_Contig1137:8690..88441680789461.6883056-CDS-P-littoralis_Contig1137:8690..8844Pylaiella littoralis U1_48CDSP-littoralis_Contig1137 8691..8844 -
1680789461.7011056-CDS-P-littoralis_Contig1137:8974..92001680789461.7011056-CDS-P-littoralis_Contig1137:8974..9200Pylaiella littoralis U1_48CDSP-littoralis_Contig1137 8975..9200 -
1680789461.7123003-CDS-P-littoralis_Contig1137:9374..94811680789461.7123003-CDS-P-littoralis_Contig1137:9374..9481Pylaiella littoralis U1_48CDSP-littoralis_Contig1137 9375..9481 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789461.7247481-UTR-P-littoralis_Contig1137:9481..95601680789461.7247481-UTR-P-littoralis_Contig1137:9481..9560Pylaiella littoralis U1_48UTRP-littoralis_Contig1137 9482..9560 -
1680789461.733151-UTR-P-littoralis_Contig1137:9755..99981680789461.733151-UTR-P-littoralis_Contig1137:9755..9998Pylaiella littoralis U1_48UTRP-littoralis_Contig1137 9756..9998 -
1680789461.74528-UTR-P-littoralis_Contig1137:10257..104731680789461.74528-UTR-P-littoralis_Contig1137:10257..10473Pylaiella littoralis U1_48UTRP-littoralis_Contig1137 10258..10473 -
1680789461.7580037-UTR-P-littoralis_Contig1137:10641..108411680789461.7580037-UTR-P-littoralis_Contig1137:10641..10841Pylaiella littoralis U1_48UTRP-littoralis_Contig1137 10642..10841 -
1680789461.771883-UTR-P-littoralis_Contig1137:10993..111611680789461.771883-UTR-P-littoralis_Contig1137:10993..11161Pylaiella littoralis U1_48UTRP-littoralis_Contig1137 10994..11161 -
1680789461.784295-UTR-P-littoralis_Contig1137:11402..115441680789461.784295-UTR-P-littoralis_Contig1137:11402..11544Pylaiella littoralis U1_48UTRP-littoralis_Contig1137 11403..11544 -
1680789461.7930424-UTR-P-littoralis_Contig1137:11681..119711680789461.7930424-UTR-P-littoralis_Contig1137:11681..11971Pylaiella littoralis U1_48UTRP-littoralis_Contig1137 11682..11971 -
1680789461.8033922-UTR-P-littoralis_Contig1137:12168..125481680789461.8033922-UTR-P-littoralis_Contig1137:12168..12548Pylaiella littoralis U1_48UTRP-littoralis_Contig1137 12169..12548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1137.1.1

>prot_P-littoralis_Contig1137.1.1 ID=prot_P-littoralis_Contig1137.1.1|Name=mRNA_P-littoralis_Contig1137.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=445bp
MGDVMETYVCDTFGAKTELAHLKKLGVTGGNEAAHSQANGRIATIASRMS
EARTEREISLWVHDYNRSCDEHRGIAKPYFLRHFWEEERIRTLSANVQGP
SPGGNLMIPPELGEADMELMGYDYLSFDQDKVAMTLATEDQMDWSKISAS
SSPAVVGEAPLPGGNEFDHEEQAQLGKARATSEGAGSSSFGRRGGSGRER
VAGAGGSVGSGAAEIAVTGSAPLGSSSGAGALDASTGGSGLGAPSMACVA
TLGQRPAAAGRTGAGTGAGAAAEEQAGAGAGVRASAVAGAGPRAAAAANT
RAGLRAAEPGRSSSGGTAWAGGRTGARAGKVAEQSVRLAAGPRDGQGRLL
KFRRVAAMNHNFAMPTTADEQQLAGDVMAKVLAKGVGGEVVREAAAAEYN
NSLNRIMLRMRGTLQPITPAYKFIPIDRTRFKQYWGDLSIATTLP
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mRNA from alignment at P-littoralis_Contig1137:7565..12548-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1137.1.1 ID=mRNA_P-littoralis_Contig1137.1.1|Name=mRNA_P-littoralis_Contig1137.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4984bp|location=Sequence derived from alignment at P-littoralis_Contig1137:7565..12548- (Pylaiella littoralis U1_48)
GCGGGCTGAGGTGCGTGTATCGGTTTGTGCAGAGTTTATTTTTACTGCTG
CTGCTGCAGTGATGGGAGCCTCACCGTCATGAGCAAAATAAATACTTCGA
AGTACAATTTAGCAATAAAACACGCTGCTGTTTCCGCTGTGTCTTTCTCC
ACTGCTGCAGTACGAGTACTGGGATCGCCAAATACATTTTAAACAGCACT
GCCGGTTTTCTCACCGTGCACGTTCAACACAACCGCTGATTGTCTAGTTT
TTCGACAGGCCAGCTTTATTCGCAGAGAAGGAGTTCCAGGTGGTCGTGGA
TGGCAAGGTCGCCGGAGTACGGTTGACTTGCTCCACCCTGCGGAAGGAAC
ACCCACACGAGTTGGGCTTCGTGGAACAGCGTGAGCATGCTGAAGTCCCG
AGAAAGCGCCTTGTTGTTTTTGCGTCGATTGCTGCTGCAGTGCAAGTAGA
AAGCAGGGCAGCTTTTTTTTTGGGTTACCGCATCTCCATTGTGTCAGAGC
AGCGAGATGCATGCCAAGCCGCCGGTTTAGTGTGTCCTGCACCGTTTCTC
TTTTCGCGGCGTCTGTACACTTACTAGATCCGGGCGATTCACAGCATATC
TGGCGAGAACATTCTTGTCTGCTCGGCCCGCCACCGGTACTTGGGGCCGG
AGTGTCAAGCTGTGATCGACGGTACGATCGCCGCGATGAAACGGCGAGAC
AAAGGCGGAGAGGCGGCGGTGCAGGCAAAAAGGAAGGGGCCGGATGGCGT
GGACAGCGCGCCAGAGGGAGTCAAGGCAGCGTTACGCAGAGGTGATGTCA
AGCCGCACATGTGGGCTGTCAAGATTCTGCTGAACGGAGGCGCGTCCTTC
ACGATTTCGGATCAAAGGTGTGGTTCTTGTACCGCTTGATTTGACCGCTG
ATGGCGTTGGAGTGCCTCCTTCTTTCCTTTTGAATTGTTTGTGCTATCGA
TGTTCCTAACCGTTTCCATTATTCCTGAGTCCGCTGCTCTTGTCACTCCC
AAAGTTATATGAGTCGGGTGCCGGCGGCAATCCGCGCCAAGTACGACTTC
GAGTGCTTTGGGAAGGGCGGCGCTGATCATGCTCTTCTCGACCTTACCGT
GACAGGGGCGCAGCCCGTGGCGGCTCTACAACGCCAAGCAAAGGAGGTAT
TGGCCTCTGCTGTGTCCTTATTGCTATCGGAAATTTGAACCCTGCAAGAG
CTGTGCAGCAGGGGGGGGGTGTGTGAGGAGTTGGAGTAAGTTGGCACTCA
CATTGATGTCGGCGTAAGTAGTACGGTTCAAAAATGAACGCGCCGTTCGC
GATGTTACGCCAAAAATGATATTAGTCTCTCGTTTGGCGTTTTGGTTTAG
TGTCGGATCTTGATCCGTCTTTGCTATTTTTCTGCAGGCATACGACTTCC
AGCAAAGAAAAAGGCATACGTGCGAGAGTATCTTCGCAGCCGGCAACAAG
GAAGGAGGACTGTTCCCGGCGCTGGGCGTGGTGGGAAGCGGCACCCTTCT
ATCTGGCCCTTCTACGGCGTACATGGAGACGTACTGCGCGAAGTCGTCTG
AGGCGGTGAGAAACACTCCAAACGATGCTACAACTCTGCATCGCGAAATA
GGTTCAAAGAGCATCCAAACCATCGAAGACAAACCATCGAAGACAAGAAA
ACAATTTCCGTTGACCCTTGGCTGTAACTATTTTGCGTCGATTTTTCTTG
TTTCCAGGTGAAGCCGATGTTGACGAGAGAGCTCTGCAATCTTTCACCGG
GGAGATCGTTCTCGGTGGATGCGACGTTTAGGCTGGCGAAAGTCTCCACC
GGTGACGCCTCCTGCATCGTGTTTCTACTGGGAGAGTTCGGGCACATCAT
TGCGTGGGCCGCTCCTCGGTCCGACAAGTGGAGCAATTTGCTGCCCGTGC
TCCACGCGTGAGTTTTGTTTTTATACAATGTACAGAGGGGTGACGAGATA
TGAAATGCCCGCCGTGTCCAAGTTGGGCGCTGTCCTGCTGCGCGAAACTG
AAGTTGAAACTGAGTCCCTGTCTTCCTTCGAATTTTGTTTTTGTTCGCGT
TTCACACAATTTCACCAATGGACAGGCTCAGGAAACGGTTGGACCGGCTG
GGGACACTCCTCGACTTGGAGAAGGTGTTTGCAGACACCTGCTGCGAAGG
GAAGAAGAACGTCCTCGCGCACGTGTGTGTCGACATTTTTCCGAACGTGA
CGAAGACTCCGTACGCTGACCTGTTTCACAAAGTCCAGATTCTGTCCACC
CACACCCTGAGTGCACACCCCCTGCACGCTTCATTTACCAGGTAATTGAA
GACGCTGCACCCTGTTGAATTAAAATGTAAGCAAGAAAGGTTCCCATGCA
AAGGATGCGCGGCAAGCCCTCCAGTGGTTTTGCCCCCCCTAATTTTGGGA
AAGTAATGAGCACCTGCAAAGGATGAACACGACGCGTTTAGAGCGCCGGG
CACGTTTTCCCCTCGTAACAACCGTAGTGGTCATGATCGCCCATCTCACC
CCCTTGCCCGCTAACTTCCTTTCCCTTACGTGCCCGCGTTCCCTTGTCAG
GGAAGTCGGCGCCTGCATCGCCAAGAAGTACCAACCGGACGTTTACCGCG
TTGCGGGGTCCATCATCAGGAGCAGGGACGTTACGGCCGAGAGAGCGATG
GAGCTGGCCATGAACAGCCGCTACAGGAGACACATCCGCACGTTTACAGC
GTCTGACTGCGCCGCCCGTCTTTGGATTGTCTATGAAAAATTCAAGAAGC
TCAGCGACGAGTGCGTGGAGAGGGGCGAGAGACCGCTTTACCAGTGAGTT
TGAGCTGTTGACGTTGTGTCTTTTACGAATTGAGCTTGTACATAGGTCGC
TCCTATCTTTTGTTTTTCCACACACTTACAGGTGTTGCTGTGGCCACGGA
GAGTACCAGCAAAAACAAAAATGTTCACCGTACTGTGTTCGTTTTTTTCC
TGTGTGTGGTCCCGATTGTGCACGTCGAACCAAAACAGGGACAGAAGGGG
CACGTCATAAAGCACTACTTCTGCTTTCAAGAACGTCACCGGTTGCGTCG
ACAAGGGATGTATCGCCATGGGTGACGTCATGGAGACGTACGTCTGCGAC
ACTTTTGGCGCAAAGACGGAACTCGCCCACTTGAAGAAGCTCGGGGTCAC
AGGGGGAAACGAAGCAGCGCACAGGTAACAGCTCTGGGTTTTCGTGTTGA
GTTTATTTCAAGAGAAGTGTTCGAGCAGCGGTTGCAACAAAAATGACTTT
GTGTGTAGTGTGTAGATACACGTTATTCCGGTCTCATGCGAGGGCATACA
AATAGAATGAAGATGACGCGCGTGCCCTGCCCGTGTATCGTTTCGCAGTC
AGGCAAACGGAAGAATCGCGACGATAGCTTCGAGAATGAGCGAGGCGAGG
ACTGAACGCGAGATTTCGTTGTGGGTCCACGACTACAACCGCTCCTGCGA
CGAGCACCGAGGCATAGCCAAGCCGTACTTTCTCAGGCACTTCTGGGAGG
AGGAGAGGATTCGAACGCTGTCAGCGAACGTTCAAGGCCCGTCCCCAGGA
GGAAACCTGATGATCCCGCCAGAGGTAATGCGTCGCACTAAATGTGACAA
AGTACACTGCCGGAAAATAGACGGGGGGACACACGTGTTGACATTTATCC
GCTCATCGTTTGTCACCCCCCTCTGCCACCTGTCTTGATGTCACCCTGCA
CCAGTTGGGCGAGGCAGACATGGAGCTGATGGGATACGACTACCTCTCTT
TCGACCAAGACAAGGTGGCGATGACCCTTGCAACGGAGGACCAGATGGAT
TGGTCGAAGATCAGTGCCTCTTCCTCACCAGCTGTTGTTGGAGAGGCCCC
CTTGCCAGGTTTGTTGTTTATAGAATTCGTGATGCGTGTAATCTCGTAAT
TTGGATTGCTAGTTGTCTATCGATAGAGCCGTGACACCCCATCGAGTACA
ACACGATGCCATCTTACAAATCAGCGCCGTGTTTGCCTTTCAGGGGGGAA
CGAGTTCGATCACGAAGAACAAGCGCAGCTTGGAAAGGCGCGAGCAACGA
GCGAAGGGGCGGGGTCATCTTCTTTTGGGCGGCGTGGGGGAAGCGGTCGC
GAACGCGTTGCCGGAGCGGGCGGAAGTGTTGGGTCCGGCGCGGCGGAGAT
TGCGGTGACCGGATCGGCGCCTCTTGGAAGTAGTAGCGGAGCAGGTGCCC
TCGACGCCTCCACGGGGGGGAGCGGACTAGGTGCCCCTAGCATGGCATGC
GTGGCAACCCTTGGACAGCGGCCAGGTACTCATGTTGGACAGGAATGCGT
TTGAACTCCCATCGGGTTGCACCCAGTCGTGTATTGTTCATTTGAGCGCT
TGTTTGCCGTGCGAGCAACCCATGATGTTGATGCCCTCTTTTTCTCTTCC
CACACTCGTCATCACCAGCAGCAGCAGGTCGAACGGGCGCAGGAACGGGA
GCTGGGGCGGCGGCAGAGGAGCAAGCAGGGGCGGGAGCAGGGGTAAGAGC
AAGCGCGGTAGCAGGGGCGGGACCGAGAGCGGCCGCAGCAGCAAATACTC
GAGCTGGGCTGAGAGCGGCCGAACCCGGCCGGTCCTCGAGCGGTGGCACC
GCATGGGCAGGAGGGCGGACGGGCGCGCGCGCGGGCAAGGTGGCCGAGCA
GAGCGTGAGGCTGGCGGCTGGACCACGAGATGGGCAGGGGAGACTGCTTA
AATTCAGGAGGGTGGCCGCAATGAATCACAACTTTGCGATGCCTACGACT
GCGGACGAGCAGCAGCTTGCGGGCGACGTCATGGCAAAGGTATTGGCGAA
AGGCGTGGGGGGTGAGGTTGTGAGGGAGGCTGCTGCCGCCGAGTACAACA
ATTCATTGAACCGCATCATGCTCAGAATGCGTGGTACGCTTCAACCTATC
ACCCCCGCGTACAAGTTCATCCCCATCGATCGTACACGGTTCAAGCAATA
CTGGGGGGATTTATCGATTGCCACGACATTGCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1137:7565..12548-

>mRNA_P-littoralis_Contig1137.1.1 ID=mRNA_P-littoralis_Contig1137.1.1|Name=mRNA_P-littoralis_Contig1137.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1335bp|location=Sequence derived from alignment at P-littoralis_Contig1137:7565..12548- (Pylaiella littoralis U1_48)
ATGGGTGACGTCATGGAGACGTACGTCTGCGACACTTTTGGCGCAAAGAC
GGAACTCGCCCACTTGAAGAAGCTCGGGGTCACAGGGGGAAACGAAGCAG
CGCACAGTCAGGCAAACGGAAGAATCGCGACGATAGCTTCGAGAATGAGC
GAGGCGAGGACTGAACGCGAGATTTCGTTGTGGGTCCACGACTACAACCG
CTCCTGCGACGAGCACCGAGGCATAGCCAAGCCGTACTTTCTCAGGCACT
TCTGGGAGGAGGAGAGGATTCGAACGCTGTCAGCGAACGTTCAAGGCCCG
TCCCCAGGAGGAAACCTGATGATCCCGCCAGAGTTGGGCGAGGCAGACAT
GGAGCTGATGGGATACGACTACCTCTCTTTCGACCAAGACAAGGTGGCGA
TGACCCTTGCAACGGAGGACCAGATGGATTGGTCGAAGATCAGTGCCTCT
TCCTCACCAGCTGTTGTTGGAGAGGCCCCCTTGCCAGGGGGGAACGAGTT
CGATCACGAAGAACAAGCGCAGCTTGGAAAGGCGCGAGCAACGAGCGAAG
GGGCGGGGTCATCTTCTTTTGGGCGGCGTGGGGGAAGCGGTCGCGAACGC
GTTGCCGGAGCGGGCGGAAGTGTTGGGTCCGGCGCGGCGGAGATTGCGGT
GACCGGATCGGCGCCTCTTGGAAGTAGTAGCGGAGCAGGTGCCCTCGACG
CCTCCACGGGGGGGAGCGGACTAGGTGCCCCTAGCATGGCATGCGTGGCA
ACCCTTGGACAGCGGCCAGCAGCAGCAGGTCGAACGGGCGCAGGAACGGG
AGCTGGGGCGGCGGCAGAGGAGCAAGCAGGGGCGGGAGCAGGGGTAAGAG
CAAGCGCGGTAGCAGGGGCGGGACCGAGAGCGGCCGCAGCAGCAAATACT
CGAGCTGGGCTGAGAGCGGCCGAACCCGGCCGGTCCTCGAGCGGTGGCAC
CGCATGGGCAGGAGGGCGGACGGGCGCGCGCGCGGGCAAGGTGGCCGAGC
AGAGCGTGAGGCTGGCGGCTGGACCACGAGATGGGCAGGGGAGACTGCTT
AAATTCAGGAGGGTGGCCGCAATGAATCACAACTTTGCGATGCCTACGAC
TGCGGACGAGCAGCAGCTTGCGGGCGACGTCATGGCAAAGGTATTGGCGA
AAGGCGTGGGGGGTGAGGTTGTGAGGGAGGCTGCTGCCGCCGAGTACAAC
AATTCATTGAACCGCATCATGCTCAGAATGCGTGGTACGCTTCAACCTAT
CACCCCCGCGTACAAGTTCATCCCCATCGATCGTACACGGTTCAAGCAAT
ACTGGGGGGATTTATCGATTGCCACGACATTGCCG
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