mRNA_P-littoralis_Contig1136.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1136.12.1
Unique NamemRNA_P-littoralis_Contig1136.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1136.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1136contigP-littoralis_Contig1136:50396..50981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size586
Hectar predicted targeting categorysignal anchor
Exons1
Cds size387
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789461.309665-UTR-P-littoralis_Contig1136:50395..505431680789461.309665-UTR-P-littoralis_Contig1136:50395..50543Pylaiella littoralis U1_48UTRP-littoralis_Contig1136 50396..50543 +
1680789461.3291166-UTR-P-littoralis_Contig1136:50930..509811680789461.3291166-UTR-P-littoralis_Contig1136:50930..50981Pylaiella littoralis U1_48UTRP-littoralis_Contig1136 50931..50981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789461.3207047-CDS-P-littoralis_Contig1136:50543..509301680789461.3207047-CDS-P-littoralis_Contig1136:50543..50930Pylaiella littoralis U1_48CDSP-littoralis_Contig1136 50544..50930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1136.12.1prot_P-littoralis_Contig1136.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1136 50544..50930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1136.12.1

>prot_P-littoralis_Contig1136.12.1 ID=prot_P-littoralis_Contig1136.12.1|Name=mRNA_P-littoralis_Contig1136.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
MNEVVDRGGEYAVPSSASDNCTPCGLHRLNFYKQMASRGGRTSTPLLCVF
FFVCVCVCVCVFFRPSCSWPQSTPFRMKWVHQRGSPMSLIVVVDYPSSPC
PARPSSKIIILPRGVQVSVQQTPRVPFL*
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mRNA from alignment at P-littoralis_Contig1136:50396..50981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1136.12.1 ID=mRNA_P-littoralis_Contig1136.12.1|Name=mRNA_P-littoralis_Contig1136.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=586bp|location=Sequence derived from alignment at P-littoralis_Contig1136:50396..50981+ (Pylaiella littoralis U1_48)
CCCCCCAAAAAAAAACATGCCTGGATGGGTAACGAGACAAGCGTTTCCCT
TCTGGTGTGTGTGTGCTTTCGTCCAAATGTTCTTGCCACTCAGTCTAGAC
ACCTGTCGGCATGAAGTGGGTGCGCCAGCCGGGGTCTTCAAATGTTGAAT
GAACGAAGTTGTCGATCGTGGTGGTGAATACGCTGTGCCCTCATCCGCTT
CAGATAACTGTACGCCGTGCGGCCTCCACCGTTTGAATTTCTACAAACAA
ATGGCCTCAAGGGGAGGCAGGACAAGCACCCCGCTGTTGTGTGTGTTTTT
TTTTGTGTGTGTGTGCGTGTGTGTCTGTGTGTTCTTTCGTCCCAGTTGTT
CTTGGCCTCAGTCCACACCCTTCCGCATGAAGTGGGTTCACCAGCGGGGG
TCTCCAATGTCGTTGATCGTGGTGGTGGACTACCCTAGTAGTCCGTGCCC
CGCCCGCCCTTCCAGTAAAATAATCATATTGCCTCGAGGGGTCCAAGTAT
CGGTACAACAAACCCCGAGGGTGCCTTTTTTATGATGGAGACGCCTATAT
GAGAGGGAGGAGTTTCTTGCAACGCCGACCTAATCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1136:50396..50981+

>mRNA_P-littoralis_Contig1136.12.1 ID=mRNA_P-littoralis_Contig1136.12.1|Name=mRNA_P-littoralis_Contig1136.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig1136:50396..50981+ (Pylaiella littoralis U1_48)
ATGAACGAAGTTGTCGATCGTGGTGGTGAATACGCTGTGCCCTCATCCGC
TTCAGATAACTGTACGCCGTGCGGCCTCCACCGTTTGAATTTCTACAAAC
AAATGGCCTCAAGGGGAGGCAGGACAAGCACCCCGCTGTTGTGTGTGTTT
TTTTTTGTGTGTGTGTGCGTGTGTGTCTGTGTGTTCTTTCGTCCCAGTTG
TTCTTGGCCTCAGTCCACACCCTTCCGCATGAAGTGGGTTCACCAGCGGG
GGTCTCCAATGTCGTTGATCGTGGTGGTGGACTACCCTAGTAGTCCGTGC
CCCGCCCGCCCTTCCAGTAAAATAATCATATTGCCTCGAGGGGTCCAAGT
ATCGGTACAACAAACCCCGAGGGTGCCTTTTTTATGA
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