mRNA_P-littoralis_Contig1136.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1136.8.1
Unique NamemRNA_P-littoralis_Contig1136.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1136.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1136contigP-littoralis_Contig1136:46735..49608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size557
Hectar predicted targeting categoryother localisation
Exons5
Cds size279
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1136.8.1prot_P-littoralis_Contig1136.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1136 48040..49542 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789461.2187533-UTR-P-littoralis_Contig1136:46734..468181680789461.2187533-UTR-P-littoralis_Contig1136:46734..46818Pylaiella littoralis U1_48UTRP-littoralis_Contig1136 46735..46818 +
1680789461.2272687-UTR-P-littoralis_Contig1136:47911..480391680789461.2272687-UTR-P-littoralis_Contig1136:47911..48039Pylaiella littoralis U1_48UTRP-littoralis_Contig1136 47912..48039 +
1680789461.2804523-UTR-P-littoralis_Contig1136:49542..496081680789461.2804523-UTR-P-littoralis_Contig1136:49542..49608Pylaiella littoralis U1_48UTRP-littoralis_Contig1136 49543..49608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789461.2357357-CDS-P-littoralis_Contig1136:48039..480601680789461.2357357-CDS-P-littoralis_Contig1136:48039..48060Pylaiella littoralis U1_48CDSP-littoralis_Contig1136 48040..48060 +
1680789461.247265-CDS-P-littoralis_Contig1136:48810..488831680789461.247265-CDS-P-littoralis_Contig1136:48810..48883Pylaiella littoralis U1_48CDSP-littoralis_Contig1136 48811..48883 +
1680789461.2642176-CDS-P-littoralis_Contig1136:49140..492851680789461.2642176-CDS-P-littoralis_Contig1136:49140..49285Pylaiella littoralis U1_48CDSP-littoralis_Contig1136 49141..49285 +
1680789461.27242-CDS-P-littoralis_Contig1136:49502..495421680789461.27242-CDS-P-littoralis_Contig1136:49502..49542Pylaiella littoralis U1_48CDSP-littoralis_Contig1136 49503..49542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1136.8.1

>prot_P-littoralis_Contig1136.8.1 ID=prot_P-littoralis_Contig1136.8.1|Name=mRNA_P-littoralis_Contig1136.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
MGKPEGQDADCGREPRRPHNVREIRVSFSTPDSERGRPRHLPGSPLRVFF
LSGRHQQLPFCLPRLLLGVPKDIHQRQVGRCQHHGGRRRRDG*
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mRNA from alignment at P-littoralis_Contig1136:46735..49608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1136.8.1 ID=mRNA_P-littoralis_Contig1136.8.1|Name=mRNA_P-littoralis_Contig1136.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2874bp|location=Sequence derived from alignment at P-littoralis_Contig1136:46735..49608+ (Pylaiella littoralis U1_48)
CACCTTGAAGCCAAGGCCATCAACAGCACCTCTACACGGCCACTGGTGAG
CACCTACGCTCGCGTGCGCGTGTACTGGCAGTAGGTACGATAGGTGACGT
GCATTCTGTTCCCGCCAAACCTCGCGCGACCTACTGATCGGCAGGCAAAG
AAACGTGATCGATGTGCGTTGTGTTTTAGTAAAGCGCTCCTTCTCTAGCT
GGTCGTATTCGATGCGGCTCATCAATCTAAAGAACACAGCAAACAAGCAC
GTAACTAAATTCGCTGCTTCCCAACACGGGAAAGGAGGATCGCAACGAGA
ACACCAACCTCCGAACAAATGAAAAGTGGCGCATTGGTCGTTTGTCTTAC
CTTGTCTATGTAGTGCGTGAAGATGGAAGAAGCAGGGAGAGAGAGAGAGA
GAGAGAGAGGTGTACGCAAGCGAACGTCTCCTCTCACTTCTTTGTAGTAT
ATCCCTGCCCCCCTGTCTCTCATCTTCGCATTATATAAACCCTCAGCAGC
AGCAGCACACAGCAGTGACTTCGTGACTACAACAAGGGTAGTCACAGCGT
GCATCTTGGTACTCCTAGGGTGCCAACGCTGGTGCTTGCCGTTGTTGTTA
GCCTTGACCATTCAGTGACGGCCTCATGCTTAGCAGCATACCGCGGTGAA
CTACAAGGAAGGGTACACACCCTGTGGTACATATCATACGAGTAATATAT
GATTGAGTCCATCCTTATATTTTTGGTATATAACTCCTGCTGTACCAGTT
TATATACAACTAAATATGGATACTGCTGTGTTGAGTAGTGCAAAGAGACG
CGGCTCCGTCCTGTTCACAGCAGCAGTACCGTTTGCCGCAGTCACACAGC
AGTGACGGCCATTATGCTTCGAGCAGCAGTATACTGCGGTACTCCTGTTG
TTGCAGGTGGGCTTTGTCGGTCTTTAAGCTCGAGGACGCCATGAGTGCCG
GGTACTACTTTTGCTGCATATATAATGATGTAACAGCAGTTTGCTTCTAT
TTTATAGTACACCATGAAATACTTTCAGCTATCGTGTGTTGGTCCTGCAT
CATCAGTTGCAGTGCACACTAGTGGTGGTATGATAAGGGAGCGACAAGAT
GTATTTTACCACAATCCCAACAGCAATCCAACCCCCATTCTGACGGCAGC
ACTCTTTCCTCTTTCCTTGCTTTTCAGTTCCTACGCAACGTGGGCAACAA
CTCCTCGAATCCCCCAGGCAGGGTGGCGGCGGCAGGAGCAGAGGCGGGCG
TGGCAAGCGGAGGAGCGGGGGTGCGCAGGGCGAGACGAGCGACGGGACGG
GGTCGATGGGGAAACCGGAAGGACAAGTGAATCAGAACATCACCTGCGAG
CATGGCAACCTTGTCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTGTGTCTCAGTGTCTG
TGTCTGTGCCTGTGCCTGTCTGTGTGTGTGCGTGCGTGTGTCTGTGCGTG
TGTCTGTGTCTGTGTCTGTATCTGTGTCTTGTGTAAGCCTGGCCGTTTTA
CATGCCGCCACATGTGTAGATATGAATAAAGTGACGCGTTCCTGACAAGG
AGTTCTGCTACTACTGCGATGTGCTCCAAAGACGATGCTTGTACGAAGCA
GGCGTTACGCATACATCATGGTGCTTTTTTCTTGTCGTCTGTCTCGTCCT
CCTCTTCTTGTGTTCACCTTCGGCCTCGGCTGTTTTTTTGACAAGTCTAG
CCCCTGCTTTTTGATACGTAGTACTCCGTACGAAGTAATCTTCTGTCGTC
TTGATGGCGCTCACTGTACGAGATCGGCCTACATGAATGTGCTTCGCACT
ATTTAGTACGAAGTAGTAAGACACGCTTGTGTGTGTTATTTCCCCTCTTT
TGTATTCGTTTGCCCCTTCTCCCCTCTCTCTTTTTTTTTACTTATCTCCC
CTCCCCTCTCTCGCTGTCGACCCCCCTCTCTGTGTTTTCTTCTGTTTTCA
TTTTGGTTCAAAACGATTGACGACAGGATGCTGATTGCGGGCGGGAACCC
CGTAGGCCGCACAATGTTCGAGAAATACGCGTCTCTTTCAGCACACCAGG
TACGAATAAAAAAGTGTTGCAGGTGTGGGCGACGTGATTTCTCTACGAAG
GGAGAGCGCAACTGTCACGCACATGAAAACTCATATCTCATGCGAAGTTC
GTCCACTACAGTTGTACTGCGTCAACACTCGAAGTACAGTCTACGTGGGG
TATTCTTTTGTCGGATCCGGTTTTGGGTGTCTCGAACATCAGGCAAACGA
GATGTTTCTCTTCTGTGGTAATCCAATGTGTTCGCTTCCTCGGCTTTCGC
TCACAGACAGCGAACGTGGACGTCCACGGCACCTTCCGGGAAGTCCTTTG
CGAGTATTTTTCTTGAGCGGCCGTCATCAACAGCTGCCATTTTGTCTTCC
GCGGTTGCTTCTTGGGGTTCCCAAAGATATTCATCAACGACAAGTGGGCA
GGTATGTATGGGGAGGAAGCCGTAAGGATTGACATGATGCAACACACGTG
CAAACACAGCGCCGGTGTCCATTTTCCTTTCTGTAATCCGGCGCTTTTGT
TGCTGGCATGTTGTCCCATAACTATGTTCAAAGGCGTCCCTGTGCATCCC
TTTTTTTTTGCCCCTAACTAATGTCGTACGTTCATGCTTCGTAATTGTTT
TCTGTATTTTGGCCACAGATGTCAACATCATGGAGGCCGCCGCCGGCGAG
ATGGATGATAGGAACGGGTGGTCGTTACGGGACAGCAGTGGCTGGCGAGG
GGATTTCGGTGTCCGTTGCGGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1136:46735..49608+

>mRNA_P-littoralis_Contig1136.8.1 ID=mRNA_P-littoralis_Contig1136.8.1|Name=mRNA_P-littoralis_Contig1136.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig1136:46735..49608+ (Pylaiella littoralis U1_48)
ATGGGGAAACCGGAAGGACAAGATGCTGATTGCGGGCGGGAACCCCGTAG
GCCGCACAATGTTCGAGAAATACGCGTCTCTTTCAGCACACCAGACAGCG
AACGTGGACGTCCACGGCACCTTCCGGGAAGTCCTTTGCGAGTATTTTTC
TTGAGCGGCCGTCATCAACAGCTGCCATTTTGTCTTCCGCGGTTGCTTCT
TGGGGTTCCCAAAGATATTCATCAACGACAAGTGGGCAGATGTCAACATC
ATGGAGGCCGCCGCCGGCGAGATGGATGA
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