mRNA_P-littoralis_Contig1135.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1135.2.1
Unique NamemRNA_P-littoralis_Contig1135.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 1.790e-58
Identity = 109/172 (63.37%), Postives = 128/172 (74.42%), Query Frame = 2
Query:  389 GVYFKRAELGALQFYYDKSYVFNPRDIGVVLGDTTVRIDGKSHVVKSFDHGKYKLEDHESTLTQWELLRDRCDGGVTLDADLRRFIIHLVQKQTVMMASVVPHMSGTSGNVVTGMLWNYDDAIARAEAHVDKIDTESKNMTIDDLMEIKEKVESLRDLSLRIFTKVPSNNTL 904
            GVY+KRAEL  LQ+YYDKSY F+P++IGVVL +T V+ID + H VKS DHGKY LE  ES +TQWELL +RCD  VTLD DLRRFI+HLV K TVMM SVVP +SG    VVTGMLWN +DAI RA    D  D E K M I +LM IK +V++LRDLSL +FTK+P   TL
Sbjct:  111 GVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSG----VVTGMLWNPNDAIDRASRSGDDTDPERK-MKISELMSIKVRVDTLRDLSLAVFTKIPVEATL 277          
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 5.620e-48
Identity = 100/159 (62.89%), Postives = 117/159 (73.58%), Query Frame = 2
Query:  389 GVYFKRAELGALQFYYDKSYVFNPRDIGVVLGDTTVRIDGKSHVVKSFDHGKYKLEDHESTLTQWELLRDRCDGGVTLDADLRRFIIHLVQKQTVMMASVVPHMSGTSGNVVTGMLWNYDDAIARAEAHVDKIDTESKNMTIDDLMEIKEKVESLRDLS 865
            GVY+KRAEL  LQ+YYDKSYV +P++I VV G T V+IDG  HVVKS DHGKY LE  EST+TQWELL  RCD GVTL  DLRRFI+HLV K TVMM SVVP ++G    V+T MLWN +DA+A      D  D ES NM   +LM IKE+V++LRDLS
Sbjct:  267 GVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHLVTKYTVMMGSVVPALTG----VLTVMLWNPNDAVANKCG--DDTDPES-NMKTSELMSIKERVDTLRDLS 418          
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 4.490e-32
Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = 2
Query:  386 KGVYFKRAELGALQFYYDKSYVFNPRDIGVVLGDTTVRIDGKSHVVKSFDHGKYKLEDHESTLTQWELLRDRCDGGVTLDADLRRFIIHL 655
            +GVY KR E+  L++YYDKSY+F+P+ IGVV G+T+V IDG  HVVKS D GKY LE  +ST+TQWELL +RC  GVTLD DLRRFI HL
Sbjct:  110 EGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHL 199          
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.030e-29
Identity = 79/174 (45.40%), Postives = 107/174 (61.49%), Query Frame = 2
Query:  389 GVYFKRAELGALQFYYDKSYVFNPRDIGVVLGDTTVRIDGKSHVVKSFDHGKYKLEDHESTLTQWELLRDRCDGGVTLDADLRRFIIHLVQKQTVMMASVVPHM-SGTSGNVVTGMLWNYDDAIARAEAHVDKIDTESKNMTIDDLMEIKEKVESLRDLSLRIFTKVPSNNTLP 907
            GV+FKRA L AL+ Y++  YVF+P  IGV LG T V ID +  VV+SFD G+Y L D  S + QW +L +R DGGVTL+ + RRFIIHLV     MMA VVP +   ++ ++V  M+WN  +A  R          E+     ++L +I  +V +LRDL+LRIFT     +TLP
Sbjct:  760 GVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEEFVVESFDCGEYSLSDG-SVMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTPSMVKDMMWNPVEAGKR----------ETNKERREELDQIINRVNTLRDLTLRIFTGAAVKDTLP 922          
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59)

HSP 1 Score: 119 bits (298), Expect = 1.610e-27
Identity = 70/174 (40.23%), Postives = 103/174 (59.20%), Query Frame = 2
Query:  386 KGVYFKRAELGALQFYYDKSYVFNPRDIGVVLGDTTVRIDGKSHVVKSFDHGKYKLEDHESTLTQWELLRDRCDGGVTLDADLRRFIIHLVQKQTVMMASVVPHMSGTSGNVVTGMLWNYDDAIARAEAHVDKIDTESKNMTIDDLMEIKEKVESLRDLSLRIFTKVPSNNTLP 907
            +GVYF R+    ++  Y+  Y F+P DIGV +G TTV    K   V++FD+G Y L D +S LTQW++L +R   GVTL+ DLRR+I  LV    VM ++ VP +    GNV  GM+ +    +A AE  +D ID+ S+ +  ++L+ IK   + +RD +L IFT     + LP
Sbjct:  171 EGVYFPRSSKSEIKSQYELDYAFDPSDIGVEVGRTTVTWGNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIEN-DGNVHDGMMLDVYGGLANAEKSLDGIDSLSQ-LGREELLRIKTDTDRVRDFALEIFTGSSVRDILP 342          
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: D7FZ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ65_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 4.000e-25
Identity = 68/146 (46.58%), Postives = 85/146 (58.22%), Query Frame = 2
Query:  389 GVYFKRAELGALQFYYDKSYVFNPRDIGVVLG------DTTVRIDGKSHVVKSFDHGKYKLEDHESTLTQWELLRDRCDGGVTLDADLRRFIIHLVQKQTVMMASVVPHMSGTSGNVVTGMLWNYDDAIARAEAHVDKIDTESKNM 808
            GVY +R +L  L+  +  +Y+FNP  IGV L       +T V I G+  VVKSF+ GKY LED  + + QWELL  RC GGVTLD + RRF+  LV   T MMA  VP      GN+  GMLWN DDAI R E+    +D    N+
Sbjct:  287 GVYCRRDKLDELESAFSAAYMFNPSHIGVSLNPLDPLNETKVEIGGRELVVKSFNTGKYTLEDG-TEIGQWELLETRCGGGVTLDDECRRFVRFLVATYTAMMARGVP-FERDGGNMSGGMLWNVDDAITRLESGSFDLDEGDMNL 430          
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: A0A6H5JK98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK98_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 7.100e-7
Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  392 VYFKRAELGALQFYYDKSYVFNPRDIGVVLGDTTVRIDGKSHVVKSFDHGKYKLEDH----ESTLTQWELLRDRCDGG---VTLDADLRRFIIHLVQKQTVMMASVVPHMS 703
            VYF     G  + Y   S V NP DIG+++G+T V++DG  + V S + G Y L          L QWE+L +R   G    TL+ D R+F I L+ +   M  ++VP+++
Sbjct:  169 VYFNVGTKGFKESYNMVSKV-NPGDIGIIMGETRVKMDGVHYTVVSVEDGLYSLAKDGGAASKELGQWEVLENRIHDGQGHATLEEDQRKFAISLILQYGNMWLTMVPYLN 278          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LJ27_ECTSI1.790e-5863.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2A3_9PHAE5.620e-4862.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQV3_ECTSI4.490e-3265.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPM1_ECTSI1.030e-2945.40PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
UPI0000161E591.610e-2740.23hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
D7FZ65_ECTSI4.000e-2546.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JK98_9PHAE7.100e-735.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1135contigP-littoralis_Contig1135:14651..15557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size907
Hectar predicted targeting categoryother localisation
Exons1
Cds size594
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789460.7993615-UTR-P-littoralis_Contig1135:14650..149511680789460.7993615-UTR-P-littoralis_Contig1135:14650..14951Pylaiella littoralis U1_48UTRP-littoralis_Contig1135 14651..14951 -
1680789460.825218-UTR-P-littoralis_Contig1135:15545..155571680789460.825218-UTR-P-littoralis_Contig1135:15545..15557Pylaiella littoralis U1_48UTRP-littoralis_Contig1135 15546..15557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789460.813251-CDS-P-littoralis_Contig1135:14951..155451680789460.813251-CDS-P-littoralis_Contig1135:14951..15545Pylaiella littoralis U1_48CDSP-littoralis_Contig1135 14952..15545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1135.2.1prot_P-littoralis_Contig1135.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1135 14952..15545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1135.2.1

>prot_P-littoralis_Contig1135.2.1 ID=prot_P-littoralis_Contig1135.2.1|Name=mRNA_P-littoralis_Contig1135.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=198bp
MDVDCGGGGGGDDNGPEAMDDTENEVGDGYGGVGGVGGVRKKRDGFGKVL
YSTAIAAKLREPSDEEIDQHMQRSREKTAEKPEERKGTVTRTPSERSGPT
SIPLMSKLLGAGLCATPGDGLEIAERGVLQACRARSPAILLRQVLRIQSA
GHWGGFRRHYRQDRWQVPRREIVRSRQVQAGRSRIDTYPMGASARPV*
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mRNA from alignment at P-littoralis_Contig1135:14651..15557-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1135.2.1 ID=mRNA_P-littoralis_Contig1135.2.1|Name=mRNA_P-littoralis_Contig1135.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=907bp|location=Sequence derived from alignment at P-littoralis_Contig1135:14651..15557- (Pylaiella littoralis U1_48)
AGCGTTGAGGCTATGGACGTTGACTGCGGCGGTGGTGGTGGCGGTGACGA CAACGGTCCCGAAGCTATGGATGATACAGAGAACGAGGTTGGTGACGGGT ACGGCGGCGTCGGTGGCGTCGGCGGCGTGCGGAAAAAACGGGACGGATTT GGAAAAGTTCTCTATTCTACCGCAATAGCCGCCAAACTCCGTGAGCCGTC CGATGAGGAGATCGACCAGCACATGCAACGCTCTAGAGAGAAGACGGCTG AAAAACCTGAAGAGAGAAAGGGTACGGTCACCCGCACGCCAAGTGAACGT AGTGGACCTACTTCGATCCCGCTCATGAGCAAACTGCTCGGTGCTGGTCT GTGTGCTACACCCGGCGACGGTCTCGAGATAGCCGAAAGGGGTGTACTTC AAGCGTGCCGAGCTCGGAGCCCTGCAATTTTACTACGACAAGTCTTACGT ATTCAATCCGCGGGACATTGGGGTGGTTTTAGGAGACACTACCGTCAGGA TAGATGGCAAGTCCCACGTCGTGAAATCGTTCGATCACGGCAAGTACAAG CTGGAAGATCACGAATCGACACTTACCCAATGGGAGCTTCTGCGAGACCG GTGTGATGGCGGGGTGACACTCGACGCTGACCTCCGGCGGTTCATCATTC ATCTGGTGCAGAAGCAGACAGTCATGATGGCTTCGGTCGTGCCCCATATG AGCGGCACTAGCGGCAATGTGGTGACCGGGATGCTCTGGAATTACGACGA TGCCATTGCCAGAGCCGAAGCGCATGTTGACAAGATCGACACCGAGAGCA AGAACATGACGATCGACGACCTGATGGAAATAAAAGAGAAGGTGGAATCT CTGCGGGACTTGTCGCTGCGCATCTTCACCAAAGTCCCATCGAACAACAC CCTGCCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1135:14651..15557-

>mRNA_P-littoralis_Contig1135.2.1 ID=mRNA_P-littoralis_Contig1135.2.1|Name=mRNA_P-littoralis_Contig1135.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=594bp|location=Sequence derived from alignment at P-littoralis_Contig1135:14651..15557- (Pylaiella littoralis U1_48)
ATGGACGTTGACTGCGGCGGTGGTGGTGGCGGTGACGACAACGGTCCCGA
AGCTATGGATGATACAGAGAACGAGGTTGGTGACGGGTACGGCGGCGTCG
GTGGCGTCGGCGGCGTGCGGAAAAAACGGGACGGATTTGGAAAAGTTCTC
TATTCTACCGCAATAGCCGCCAAACTCCGTGAGCCGTCCGATGAGGAGAT
CGACCAGCACATGCAACGCTCTAGAGAGAAGACGGCTGAAAAACCTGAAG
AGAGAAAGGGTACGGTCACCCGCACGCCAAGTGAACGTAGTGGACCTACT
TCGATCCCGCTCATGAGCAAACTGCTCGGTGCTGGTCTGTGTGCTACACC
CGGCGACGGTCTCGAGATAGCCGAAAGGGGTGTACTTCAAGCGTGCCGAG
CTCGGAGCCCTGCAATTTTACTACGACAAGTCTTACGTATTCAATCCGCG
GGACATTGGGGTGGTTTTAGGAGACACTACCGTCAGGATAGATGGCAAGT
CCCACGTCGTGAAATCGTTCGATCACGGCAAGTACAAGCTGGAAGATCAC
GAATCGACACTTACCCAATGGGAGCTTCTGCGAGACCGGTGTGA
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