mRNA_P-littoralis_Contig1135.2.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI) HSP 1 Score: 207 bits (526), Expect = 1.790e-58 Identity = 109/172 (63.37%), Postives = 128/172 (74.42%), Query Frame = 2
Query: 389 GVYFKRAELGALQFYYDKSYVFNPRDIGVVLGDTTVRIDGKSHVVKSFDHGKYKLEDHESTLTQWELLRDRCDGGVTLDADLRRFIIHLVQKQTVMMASVVPHMSGTSGNVVTGMLWNYDDAIARAEAHVDKIDTESKNMTIDDLMEIKEKVESLRDLSLRIFTKVPSNNTL 904
GVY+KRAEL LQ+YYDKSY F+P++IGVVL +T V+ID + H VKS DHGKY LE ES +TQWELL +RCD VTLD DLRRFI+HLV K TVMM SVVP +SG VVTGMLWN +DAI RA D D E K M I +LM IK +V++LRDLSL +FTK+P TL
Sbjct: 111 GVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSG----VVTGMLWNPNDAIDRASRSGDDTDPERK-MKISELMSIKVRVDTLRDLSLAVFTKIPVEATL 277
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE) HSP 1 Score: 182 bits (461), Expect = 5.620e-48 Identity = 100/159 (62.89%), Postives = 117/159 (73.58%), Query Frame = 2
Query: 389 GVYFKRAELGALQFYYDKSYVFNPRDIGVVLGDTTVRIDGKSHVVKSFDHGKYKLEDHESTLTQWELLRDRCDGGVTLDADLRRFIIHLVQKQTVMMASVVPHMSGTSGNVVTGMLWNYDDAIARAEAHVDKIDTESKNMTIDDLMEIKEKVESLRDLS 865
GVY+KRAEL LQ+YYDKSYV +P++I VV G T V+IDG HVVKS DHGKY LE EST+TQWELL RCD GVTL DLRRFI+HLV K TVMM SVVP ++G V+T MLWN +DA+A D D ES NM +LM IKE+V++LRDLS
Sbjct: 267 GVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHLVTKYTVMMGSVVPALTG----VLTVMLWNPNDAVANKCG--DDTDPES-NMKTSELMSIKERVDTLRDLS 418
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI) HSP 1 Score: 127 bits (319), Expect = 4.490e-32 Identity = 59/90 (65.56%), Postives = 71/90 (78.89%), Query Frame = 2
Query: 386 KGVYFKRAELGALQFYYDKSYVFNPRDIGVVLGDTTVRIDGKSHVVKSFDHGKYKLEDHESTLTQWELLRDRCDGGVTLDADLRRFIIHL 655
+GVY KR E+ L++YYDKSY+F+P+ IGVV G+T+V IDG HVVKS D GKY LE +ST+TQWELL +RC GVTLD DLRRFI HL
Sbjct: 110 EGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHL 199
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI) HSP 1 Score: 129 bits (324), Expect = 1.030e-29 Identity = 79/174 (45.40%), Postives = 107/174 (61.49%), Query Frame = 2
Query: 389 GVYFKRAELGALQFYYDKSYVFNPRDIGVVLGDTTVRIDGKSHVVKSFDHGKYKLEDHESTLTQWELLRDRCDGGVTLDADLRRFIIHLVQKQTVMMASVVPHM-SGTSGNVVTGMLWNYDDAIARAEAHVDKIDTESKNMTIDDLMEIKEKVESLRDLSLRIFTKVPSNNTLP 907
GV+FKRA L AL+ Y++ YVF+P IGV LG T V ID + VV+SFD G+Y L D S + QW +L +R DGGVTL+ + RRFIIHLV MMA VVP + ++ ++V M+WN +A R E+ ++L +I +V +LRDL+LRIFT +TLP
Sbjct: 760 GVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEEFVVESFDCGEYSLSDG-SVMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTPSMVKDMMWNPVEAGKR----------ETNKERREELDQIINRVNTLRDLTLRIFTGAAVKDTLP 922
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59) HSP 1 Score: 119 bits (298), Expect = 1.610e-27 Identity = 70/174 (40.23%), Postives = 103/174 (59.20%), Query Frame = 2
Query: 386 KGVYFKRAELGALQFYYDKSYVFNPRDIGVVLGDTTVRIDGKSHVVKSFDHGKYKLEDHESTLTQWELLRDRCDGGVTLDADLRRFIIHLVQKQTVMMASVVPHMSGTSGNVVTGMLWNYDDAIARAEAHVDKIDTESKNMTIDDLMEIKEKVESLRDLSLRIFTKVPSNNTLP 907
+GVYF R+ ++ Y+ Y F+P DIGV +G TTV K V++FD+G Y L D +S LTQW++L +R GVTL+ DLRR+I LV VM ++ VP + GNV GM+ + +A AE +D ID+ S+ + ++L+ IK + +RD +L IFT + LP
Sbjct: 171 EGVYFPRSSKSEIKSQYELDYAFDPSDIGVEVGRTTVTWGNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIEN-DGNVHDGMMLDVYGGLANAEKSLDGIDSLSQ-LGREELLRIKTDTDRVRDFALEIFTGSSVRDILP 342
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: D7FZ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ65_ECTSI) HSP 1 Score: 114 bits (284), Expect = 4.000e-25 Identity = 68/146 (46.58%), Postives = 85/146 (58.22%), Query Frame = 2
Query: 389 GVYFKRAELGALQFYYDKSYVFNPRDIGVVLG------DTTVRIDGKSHVVKSFDHGKYKLEDHESTLTQWELLRDRCDGGVTLDADLRRFIIHLVQKQTVMMASVVPHMSGTSGNVVTGMLWNYDDAIARAEAHVDKIDTESKNM 808
GVY +R +L L+ + +Y+FNP IGV L +T V I G+ VVKSF+ GKY LED + + QWELL RC GGVTLD + RRF+ LV T MMA VP GN+ GMLWN DDAI R E+ +D N+
Sbjct: 287 GVYCRRDKLDELESAFSAAYMFNPSHIGVSLNPLDPLNETKVEIGGRELVVKSFNTGKYTLEDG-TEIGQWELLETRCGGGVTLDDECRRFVRFLVATYTAMMARGVP-FERDGGNMSGGMLWNVDDAITRLESGSFDLDEGDMNL 430
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Match: A0A6H5JK98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK98_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 7.100e-7 Identity = 39/111 (35.14%), Postives = 59/111 (53.15%), Query Frame = 2
Query: 392 VYFKRAELGALQFYYDKSYVFNPRDIGVVLGDTTVRIDGKSHVVKSFDHGKYKLEDH----ESTLTQWELLRDRCDGG---VTLDADLRRFIIHLVQKQTVMMASVVPHMS 703
VYF G + Y S V NP DIG+++G+T V++DG + V S + G Y L L QWE+L +R G TL+ D R+F I L+ + M ++VP+++
Sbjct: 169 VYFNVGTKGFKESYNMVSKV-NPGDIGIIMGETRVKMDGVHYTVVSVEDGLYSLAKDGGAASKELGQWEVLENRIHDGQGHATLEEDQRKFAISLILQYGNMWLTMVPYLN 278 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1135.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1135.2.1 >prot_P-littoralis_Contig1135.2.1 ID=prot_P-littoralis_Contig1135.2.1|Name=mRNA_P-littoralis_Contig1135.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=198bp MDVDCGGGGGGDDNGPEAMDDTENEVGDGYGGVGGVGGVRKKRDGFGKVLback to top mRNA from alignment at P-littoralis_Contig1135:14651..15557- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1135.2.1 ID=mRNA_P-littoralis_Contig1135.2.1|Name=mRNA_P-littoralis_Contig1135.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=907bp|location=Sequence derived from alignment at P-littoralis_Contig1135:14651..15557- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1135:14651..15557- >mRNA_P-littoralis_Contig1135.2.1 ID=mRNA_P-littoralis_Contig1135.2.1|Name=mRNA_P-littoralis_Contig1135.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=594bp|location=Sequence derived from alignment at P-littoralis_Contig1135:14651..15557- (Pylaiella littoralis U1_48)back to top |