mRNA_P-littoralis_Contig1135.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1135.13.1
Unique NamemRNA_P-littoralis_Contig1135.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1135.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1135contigP-littoralis_Contig1135:62035..63775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size234
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size117
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789460.7285273-UTR-P-littoralis_Contig1135:62034..620861680789460.7285273-UTR-P-littoralis_Contig1135:62034..62086Pylaiella littoralis U1_48UTRP-littoralis_Contig1135 62035..62086 -
1680789460.7438986-UTR-P-littoralis_Contig1135:62338..624021680789460.7438986-UTR-P-littoralis_Contig1135:62338..62402Pylaiella littoralis U1_48UTRP-littoralis_Contig1135 62339..62402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789460.7538097-CDS-P-littoralis_Contig1135:62402..624561680789460.7538097-CDS-P-littoralis_Contig1135:62402..62456Pylaiella littoralis U1_48CDSP-littoralis_Contig1135 62403..62456 -
1680789460.765548-CDS-P-littoralis_Contig1135:63712..637751680789460.765548-CDS-P-littoralis_Contig1135:63712..63775Pylaiella littoralis U1_48CDSP-littoralis_Contig1135 63713..63775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1135.13.1prot_P-littoralis_Contig1135.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1135 62403..63775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1135.13.1

>prot_P-littoralis_Contig1135.13.1 ID=prot_P-littoralis_Contig1135.13.1|Name=mRNA_P-littoralis_Contig1135.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=39bp
QQQQEAARAEELAVIQCALEKTWSATGGGRLQIYRWAY*
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mRNA from alignment at P-littoralis_Contig1135:62035..63775-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1135.13.1 ID=mRNA_P-littoralis_Contig1135.13.1|Name=mRNA_P-littoralis_Contig1135.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1741bp|location=Sequence derived from alignment at P-littoralis_Contig1135:62035..63775- (Pylaiella littoralis U1_48)
CAGCAGCAGCAGGAGGCGGCTAGAGCAGAGGAACTAGCGGTCATTCAGTG
TGCTCTTGAAAAGGTGATGTTGTCGAGGTGGCTTTTGGAATAACCAAACC
AGAGGTCGTCCTATTTGGATTACATAATTGACAATAATTTATTGTGATAC
GTCCCTGTATCAAAATAGTACGTACATTCAGACGGTCATCTGGCTCGTTT
CCATTTGGCTTCACCACTGGAGTTAAAATTTGTTCGAAGCACTCTCTATA
TATTTGGACTTTAGCACTATCTTTGGCGGCAATAATAAGATACGGAAGCT
CTGCTTGATACCGGAGCATGCCCCTGAAAGTGGCGTGTGCTTGAGTGCTT
ACGCAGGTGTATGTCACGGCAGTTCCCTTGGTTGACTTTCTACTCTTCTA
TTTTTGGCGTTGACCTTCAGATCATGATAAATTTCCTGAAATGGGTAAGG
AAGCGCTCCGACCAAGCTGCAGATGTGTCGAATGGTTCACCTTGTGGCGA
TAATTTCCGAGGCAGTTTCGCTGAAAACACTGAAAATTGGAAGTTGCTCT
CGTCACGCTAGATAGGGTAAAAGACCTCCACAGTGTGATTCATCATCGCT
GCGCGTGAGAAAACACCGCGGATATTAATTTCAAACAGAACAGCAAGCGC
CAAGCCAACTCTGCCGGCGACAACTATGTCCATGAAGCTACCGTCGTGCG
AATGACTCGCACCGTATGCCTTCAATAGGGTGTTTGCGCATGAGGATTTC
TTATCTCAAAATTCCTTTCCTTTCCCAAAAAGAACAAAGTTGCGGTGAGG
CTGTTTCTCACGGTCAACGTTACTTTGACCTGGCGTTTTGACTCCCCTAC
AAGAATCCAACAAGAGAACCCCCCCCCCCCCCACCTGCGAATAGCCCTGT
TGCACAAATCATGCGACAGCACCAACCAGAACTCGATCCCTAGAGCACAG
ATGCCGATCAAACTTGATAGAGCGTGTGCCCCTTTGTTCTCAAGTTGACC
ACAGCAGTTTGGTGGCAGTGGGTTCGGGCTGTGGCGAAATTTTGGCGGCG
GTGTGTGTTGGAGATGGAAAGACAGATGAAACGAAATAACAGACTTCGCT
CCTGTTTTTCCGGCCAAAAAACAGGCCCGTACAGCGTTTTTGTTTTCACC
GGATTTTCCTACCTCAACCCACTCCGCGCGTAGTAAACGCCTCAAAGACC
TGGCGCACATGGTTCGTGTAAGATTAATGTTAAAGGTCAATGCTAAATTT
TTGATCACCTACAAGTCCACTTTGTGTTCGCAATGTATCGTTTGGCGAAC
TTTTCTCAACCTTCTACAGACTTGGAGCGCCACAGGTGGTGGACGGCTAC
AAATTTATCGATGGGCATACTGAGTCGCTCTTTCAGCCGGTCCTCGCGCA
GCTAAAGACGTGCGGTGCAAGTTCCTTCGTCACCCAGGTTGGTAGTTTTT
GCTGTCGACACTCGTTGTGTGCGGGATTCACTATCGGGTCCCCGGTGTAG
ACGCGTCCGTTGGATTGATTAGTTATTCACTCGGTTTGCCAATAGTTCCT
TGTAGTTCCTTTCCGGTCCCGTTTTTACATATTTGAAGTACATCGTGTGA
GTTGAGACATTTTTCTCGAGACATTTTTCTCGGTGTCGTTAACCACCTCT
TCCTCCCGACATGATCCGTGCATCTTCCCAACTGCGCAGCGTATCCGACG
CGAGTTCGGGTCCGCGGTGGCATACATGCCACAGTCTTAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1135:62035..63775-

>mRNA_P-littoralis_Contig1135.13.1 ID=mRNA_P-littoralis_Contig1135.13.1|Name=mRNA_P-littoralis_Contig1135.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=117bp|location=Sequence derived from alignment at P-littoralis_Contig1135:62035..63775- (Pylaiella littoralis U1_48)
CAGCAGCAGCAGGAGGCGGCTAGAGCAGAGGAACTAGCGGTCATTCAGTG
TGCTCTTGAAAAGACTTGGAGCGCCACAGGTGGTGGACGGCTACAAATTT
ATCGATGGGCATACTGA
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