mRNA_P-littoralis_Contig1135.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1135.7.1
Unique NamemRNA_P-littoralis_Contig1135.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1135.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1135contigP-littoralis_Contig1135:32557..33180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size280
Hectar predicted targeting categoryother localisation
Exons2
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789460.6701114-CDS-P-littoralis_Contig1135:32556..327401680789460.6701114-CDS-P-littoralis_Contig1135:32556..32740Pylaiella littoralis U1_48CDSP-littoralis_Contig1135 32557..32740 +
1680789460.6808271-CDS-P-littoralis_Contig1135:33085..331801680789460.6808271-CDS-P-littoralis_Contig1135:33085..33180Pylaiella littoralis U1_48CDSP-littoralis_Contig1135 33086..33180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1135.7.1prot_P-littoralis_Contig1135.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1135 32557..33180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1135.7.1

>prot_P-littoralis_Contig1135.7.1 ID=prot_P-littoralis_Contig1135.7.1|Name=mRNA_P-littoralis_Contig1135.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
AQPRCDCGWRRSQRPAFMWHSSAVSRRRDRRRCNSIIWRSCAGSRSCATA
SSGAAVQAPAAGLTGAAVQAPATTNGVGPAGATAVEVVCVPP*
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mRNA from alignment at P-littoralis_Contig1135:32557..33180+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1135.7.1 ID=mRNA_P-littoralis_Contig1135.7.1|Name=mRNA_P-littoralis_Contig1135.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig1135:32557..33180+ (Pylaiella littoralis U1_48)
GCACAACCCAGGTGTGACTGCGGCTGGCGCCGTTCCCAACGCCCTGCCTT
CATGTGGCACAGCAGTGCAGTCTCCCGTCGCCGCGACCGACGTAGGTGCA
ACAGCATCATCTGGCGCAGCTGTGCAGGCTCCCGCAGTTGTGCAACAGCA
TCATCTGGCGCAGCTGTGCAGGCTCCCGCAGCAGGTGTGTTGTGGGTACC
CGGTTTTTATATACAGCAGTATACATACAGCAGTGCAGCCTTACGCAGAG
CATGTTCTTGTTCCATAGACTAGTAGATAGGTTACACTCTGCTGCTCTGC
AGCTTAGGGTTTTTTTTCCGACAACCACACTAATACGAATGTCTTGGCGT
CTCTTTGGCGAGGATCGAGCAGGACACATGGGACAACGCTAGACAACCCC
CCGAACATATGGTACGATACAACGTCCGGGTTAGGGTTGTTTGCTGCGCG
CTGTCTATGTTTATCTCGCACAATACCAAATGAGGTCCCTGTCTTTTGTA
CGACACGCGTGTGTGCAATCGCGTGGCAGGTTTGACTGGCGCAGCTGTGC
AGGCTCCCGCTACTACGAACGGCGTCGGGCCAGCAGGAGCTACAGCAGTG
GAGGTAGTATGTGTACCGCCATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1135:32557..33180+

>mRNA_P-littoralis_Contig1135.7.1 ID=mRNA_P-littoralis_Contig1135.7.1|Name=mRNA_P-littoralis_Contig1135.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig1135:32557..33180+ (Pylaiella littoralis U1_48)
GCACAACCCAGGTGTGACTGCGGCTGGCGCCGTTCCCAACGCCCTGCCTT
CATGTGGCACAGCAGTGCAGTCTCCCGTCGCCGCGACCGACGTAGGTGCA
ACAGCATCATCTGGCGCAGCTGTGCAGGCTCCCGCAGTTGTGCAACAGCA
TCATCTGGCGCAGCTGTGCAGGCTCCCGCAGCAGGTTTGACTGGCGCAGC
TGTGCAGGCTCCCGCTACTACGAACGGCGTCGGGCCAGCAGGAGCTACAG
CAGTGGAGGTAGTATGTGTACCGCCATAG
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