mRNA_P-littoralis_Contig1133.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1133.8.1
Unique NamemRNA_P-littoralis_Contig1133.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1133.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1133contigP-littoralis_Contig1133:53293..54313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size260
Hectar predicted targeting categoryother localisation
Exons3
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789460.4107878-CDS-P-littoralis_Contig1133:53292..533441680789460.4107878-CDS-P-littoralis_Contig1133:53292..53344Pylaiella littoralis U1_48CDSP-littoralis_Contig1133 53293..53344 +
1680789460.4233847-CDS-P-littoralis_Contig1133:53529..536191680789460.4233847-CDS-P-littoralis_Contig1133:53529..53619Pylaiella littoralis U1_48CDSP-littoralis_Contig1133 53530..53619 +
1680789460.4335752-CDS-P-littoralis_Contig1133:54196..543121680789460.4335752-CDS-P-littoralis_Contig1133:54196..54312Pylaiella littoralis U1_48CDSP-littoralis_Contig1133 54197..54312 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1133.8.1prot_P-littoralis_Contig1133.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1133 53293..54312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1133.8.1

>prot_P-littoralis_Contig1133.8.1 ID=prot_P-littoralis_Contig1133.8.1|Name=mRNA_P-littoralis_Contig1133.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=86bp
SSPGRNLPQEGEQAELRGQRRAMEERGGSALGESSSSRMANGTTGLSSGN
TGLISPAGAGATTAVHPGAGGGSTGATPYTEAGGDT
back to top

mRNA from alignment at P-littoralis_Contig1133:53293..54313+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1133.8.1 ID=mRNA_P-littoralis_Contig1133.8.1|Name=mRNA_P-littoralis_Contig1133.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1021bp|location=Sequence derived from alignment at P-littoralis_Contig1133:53293..54313+ (Pylaiella littoralis U1_48)
TCGTCACCAGGAAGGAATTTGCCTCAAGAAGGCGAACAGGCCGAGCTGAG
AGGTGAGTTGGGTCTTCAGCAGTGCTATGTTGTTTCGGTGGTTCTCGCCC
CTGTAGCCTCTCGTCGATACAGCAGTCGGAATATGAAATCTTGCGAGTTT
AAAATCCTTGCTTTGGAAGATCTGTACAAATTTGAAATGTAACGGTAAAA
GACACACAATCCTCTTCGTGATTACGGCCAACAACAGGCCAGCGCAGGGC
TATGGAGGAGAGGGGTGGATCTGCTCTTGGCGAGTCATCGTCATCCAGGA
TGGCCAATGGAACGACAGGGCTTAGCAGTGAGTGTTTTGCGGTCATGTTC
GAGATTACTGCTGTTGTCATGTTGCACTTATATACCCACCGCTCTCTTTT
CGTGTACAGCAGTATCACACATCGTGGAGGACATGAGCCCCACCACCTCA
AAGCAAACCACAGCAACAACCATCCATATCGTCGGTTACACAGGGCGAAG
TCCGAGGCCGGTCGACAAGAAGAATGTCTATCATATGCTCCCTGTAATTA
CCCGAAGTTGTAGTTTTATCGTGAACTTCGGGACCCAACAGGTGCAGGAC
GTGACTGCGGCATAGGTCGTATACGATGCGAAAGTGCTCCGAACGACGTG
TTGATAAGTCGAAGCGTAACTCGAGGTGGCTGGAGGTGGAGGTTAGCATA
TTTTGGGGTACAGATATGACAACAGTTACATCGGTAGTACACGCAGGGAT
GTCCCGAATTGCTCGGTACGTGTGGAGCACTGCCTCGTCCTCCACTAACT
GCCAAATTCCTCCCTACACAGACTCGTTAAGTTGGGTGACTTAGTTTCCT
TCTCATGATGAATTGTCTCCGATTTTCCACTCCCGAATGCTGGCGTCGTC
GAAGGTGGAAATACGGGTCTCATTTCCCCTGCTGGGGCTGGGGCCACTAC
TGCTGTACACCCTGGTGCTGGTGGCGGCAGCACCGGGGCTACACCGTATA
CCGAAGCCGGTGGCGACACCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1133:53293..54313+

>mRNA_P-littoralis_Contig1133.8.1 ID=mRNA_P-littoralis_Contig1133.8.1|Name=mRNA_P-littoralis_Contig1133.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig1133:53293..54313+ (Pylaiella littoralis U1_48)
TCGTCACCAGGAAGGAATTTGCCTCAAGAAGGCGAACAGGCCGAGCTGAG
AGGCCAGCGCAGGGCTATGGAGGAGAGGGGTGGATCTGCTCTTGGCGAGT
CATCGTCATCCAGGATGGCCAATGGAACGACAGGGCTTAGCAGTGGAAAT
ACGGGTCTCATTTCCCCTGCTGGGGCTGGGGCCACTACTGCTGTACACCC
TGGTGCTGGTGGCGGCAGCACCGGGGCTACACCGTATACCGAAGCCGGTG
GCGACACC
back to top