mRNA_P-littoralis_Contig1132.9.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1132.9.1
Unique NamemRNA_P-littoralis_Contig1132.9.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1132.9.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.060e-39
Identity = 86/157 (54.78%), Postives = 107/157 (68.15%), Query Frame = 1 
Query:  238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAVAGRESPEASGGTPQ------SSLLEYMSRKMDKK 690
            PELQ  +E+   ++ G G QSI VTL  PQ GKR+LTAW W+ +SRF+P+INDKNVVCLVK  +G  C HL+KW+ S  + QRGSGTTGL KH+EKFHP   +  KEE GT+ ERK  I+AA+AG  S  +S   P       SSL+ YM  K+DKK
Sbjct:   47 PELQSSSESRTMVNAGRG-QSISVTLMEPQYGKRRLTAWCWQVMSRFTPSINDKNVVCLVKKKDGTTCNHLMKWTPSEGK-QRGSGTTGLTKHIEKFHPTTAQKIKEEEGTQAERKESIQAAIAGDSSAGSSTALPSASASSSSSLVNYMVPKLDKK 201
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BLAST of mRNA_P-littoralis_Contig1132.9.1 vs. uniprot
Match: A0A6H5JE87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE87_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.830e-31
Identity = 62/123 (50.41%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
            P LQ P E+ A+I  G GK +++VTL+ P EGKR+LT+W W F SRFSP+IN KNVVCLVK  +G  CG L+KW  +    ++G+GT+G++KHLE  H + V   K + G  E+  API AA+
Sbjct:   40 PVLQVPPESEASIDVGKGK-TVKVTLKEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAAL 160
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BLAST of mRNA_P-littoralis_Contig1132.9.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.120e-28
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
            P LQ P E+ A+I  G GK +++VTLE P EGKR+LT+W W F SRFSP+IN KNVVCLVK  +G  CG L+KW  +    ++G+GT+G++KHLE  H + V   K + G  E+  API AA+
Sbjct:   40 PVLQVPPESEASIDVGKGK-TVKVTLEEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAAL 160
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BLAST of mRNA_P-littoralis_Contig1132.9.1 vs. uniprot
Match: A0A6H5KVP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP4_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.240e-28
Identity = 63/123 (51.22%), Postives = 84/123 (68.29%), Query Frame = 1 
Query:  238 PELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
            P LQ P E+ A+I  G GK +++VTLE P EGKR+LT+W W F SRFSP+IN KNVVCLVK  +G  CG L+KW  +    ++G+GT+G++KHLE  H + V   K + G  E+  API AA+
Sbjct: 1124 PVLQVPPESEASIDVGKGK-TVKVTLEEPMEGKRRLTSWTWNFASRFSPSINGKNVVCLVKKADGTPCGRLMKWEGAAL-GKKGTGTSGISKHLEICHKSEVDKHKAKVGASEDNTAPIVAAL 1244
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BLAST of mRNA_P-littoralis_Contig1132.9.1 vs. uniprot
Match: A0A6H5JJD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJD8_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.030e-26
Identity = 61/118 (51.69%), Postives = 76/118 (64.41%), Query Frame = 1 
Query:  211 QPVADSDSHPELQPPAETVATISPGGGKQSIQVTLEPPQEGKRKLTA-WVWRFVSRFSPTINDKNVVCLVKGPEGKICGHLL-KWSSSTTQAQ-----RGSGTTGLAKHLEKFHPAVV 543
            +PVA+S   P LQ P ET A++  G GK ++QVTLE P EGKR LT+ W W F SRFSP IN KNVVC+ K  +G  C HL+ KW  + T A      +GSGT+G++KHLE  H   V
Sbjct:   35 EPVAES--VPVLQSPPETQASVDAGNGK-TVQVTLEEPVEGKRMLTSSWTWHFASRFSPPINGKNVVCMAKKADGTTCKHLIMKWEGAATAAVTGKRGKGSGTSGISKHLETAHKVEV 149
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BLAST of mRNA_P-littoralis_Contig1132.9.1 vs. uniprot
Match: A0A6H5KFJ9_9PHAE (Fanconi-associated nuclease n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.190e-18
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 1 
Query:  373 RFSPTINDKNVVCLVKGPEGKICGHLLKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRAAV 606
            RF+P+INDKNVVCLVK  +G  C HL+KW+ S +  QRG+GT+ L+KH+ K HPA  K  ++E GT  +RK PIRAA+
Sbjct:  211 RFTPSINDKNVVCLVKKKDGTTCNHLMKWTPSESNKQRGTGTSWLSKHIAKAHPATAKTRRDE-GTPADRKEPIRAAI 287
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1132.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JRT6_9PHAE1.060e-3954.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JE87_9PHAE2.830e-3150.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGG8_9PHAE1.120e-2851.22Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5KVP4_9PHAE1.240e-2851.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJD8_9PHAE1.030e-2651.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ9_9PHAE5.190e-1856.41Fanconi-associated nuclease n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1132contigP-littoralis_Contig1132:34333..35548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size690
Hectar predicted targeting categoryother localisation
Exons2
Cds size690
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789460.1449053-CDS-P-littoralis_Contig1132:34332..349391680789460.1449053-CDS-P-littoralis_Contig1132:34332..34939Pylaiella littoralis U1_48CDSP-littoralis_Contig1132 34333..34939 +
1680789460.1549783-CDS-P-littoralis_Contig1132:35465..355481680789460.1549783-CDS-P-littoralis_Contig1132:35465..35548Pylaiella littoralis U1_48CDSP-littoralis_Contig1132 35466..35548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1132.9.1prot_P-littoralis_Contig1132.9.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1132 34333..35548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1132.9.1

>prot_P-littoralis_Contig1132.9.1 ID=prot_P-littoralis_Contig1132.9.1|Name=mRNA_P-littoralis_Contig1132.9.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=230bp
MCRQARRAACATRHTCPARRVRVVCLAMSASDPSVSATPSGEEAASADSS
TPAPGDASQDANESAVNTSDQPVADSDSHPELQPPAETVATISPGGGKQS
IQVTLEPPQEGKRKLTAWVWRFVSRFSPTINDKNVVCLVKGPEGKICGHL
LKWSSSTTQAQRGSGTTGLAKHLEKFHPAVVKGAKEETGTKEERKAPIRA
AVAGRESPEASGGTPQSSLLEYMSRKMDKK
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mRNA from alignment at P-littoralis_Contig1132:34333..35548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1132.9.1 ID=mRNA_P-littoralis_Contig1132.9.1|Name=mRNA_P-littoralis_Contig1132.9.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1216bp|location=Sequence derived from alignment at P-littoralis_Contig1132:34333..35548+ (Pylaiella littoralis U1_48)
ATGTGCAGACAGGCGCGGCGTGCGGCGTGCGCCACACGCCACACCTGCCC
AGCACGCAGAGTGCGCGTGGTCTGTCTAGCAATGAGCGCTTCAGACCCTA
GTGTTAGTGCTACTCCCAGTGGTGAAGAGGCTGCGTCAGCCGATTCATCC
ACGCCAGCTCCGGGCGACGCATCGCAGGATGCGAATGAGTCGGCGGTGAA
CACGAGCGATCAACCGGTGGCTGACAGTGATAGCCACCCGGAGTTGCAAC
CACCAGCCGAGACTGTAGCCACGATCAGTCCCGGCGGAGGCAAGCAGAGC
ATCCAGGTCACACTCGAGCCTCCTCAAGAAGGGAAAAGGAAGTTGACGGC
CTGGGTTTGGAGGTTTGTGAGTAGGTTTTCCCCGACCATCAACGATAAGA
ACGTGGTTTGCTTGGTGAAGGGGCCTGAGGGGAAGATCTGCGGCCATCTG
CTGAAGTGGTCTTCATCAACCACGCAGGCCCAAAGAGGGTCGGGAACGAC
TGGCTTAGCCAAGCACCTCGAAAAATTTCACCCGGCCGTGGTCAAGGGTG
CGAAGGAGGAGACAGGCACCAAGGAGGAGAGGAAAGCACCAATTCGAGCG
GCAGTTGGTGAGTCATATTACATTATTTAAGTATAATATTTATTATTTAT
TATTTATCACTTCGTATTTATTATTTATTATGTATTGTATAGACTATTTA
CTACTCCGTATTCACTGTTTGTTTGTTTTGTTTTCTATTTTCTATTTTTG
CAACTGATTTTGGGCCGAAAAGACGGAAAATGCTGTTGACTTGATTTTGT
GATTTTGTATTGCCTTCCACAAAGCAACTGAAAATAATTATTAAAATTTA
CACATATTATTGTTGTTTCTATTGTCTCCCCCAAGAGAACACACATGTAC
GTATGTATGTACGAAGTGTGGTTTCTTGTTTATGTCTATTGTCTCATTGT
CTCCTACAAACGAAAAAATAATTTCATAAATTAAGTATTTTTTTTTTTTC
TCCCCAAAACGAAAAAATAAAATAAAAAATAGTTGAATTAAATAAAAACT
ATATGAAACTTAAGATTAAAGCTATTTTTTTTTGTCTTTTTTGTTGTTTG
TTTTTCTATTCTCTCTTGGTACCTTTACGGCAGCGGGGCGTGAATCGCCG
GAGGCGTCAGGAGGAACACCTCAGTCGTCACTGCTAGAGTACATGTCACG
GAAGATGGACAAGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1132:34333..35548+

>mRNA_P-littoralis_Contig1132.9.1 ID=mRNA_P-littoralis_Contig1132.9.1|Name=mRNA_P-littoralis_Contig1132.9.1|organism=Pylaiella littoralis U1_48|type=CDS|length=690bp|location=Sequence derived from alignment at P-littoralis_Contig1132:34333..35548+ (Pylaiella littoralis U1_48)
ATGTGCAGACAGGCGCGGCGTGCGGCGTGCGCCACACGCCACACCTGCCC
AGCACGCAGAGTGCGCGTGGTCTGTCTAGCAATGAGCGCTTCAGACCCTA
GTGTTAGTGCTACTCCCAGTGGTGAAGAGGCTGCGTCAGCCGATTCATCC
ACGCCAGCTCCGGGCGACGCATCGCAGGATGCGAATGAGTCGGCGGTGAA
CACGAGCGATCAACCGGTGGCTGACAGTGATAGCCACCCGGAGTTGCAAC
CACCAGCCGAGACTGTAGCCACGATCAGTCCCGGCGGAGGCAAGCAGAGC
ATCCAGGTCACACTCGAGCCTCCTCAAGAAGGGAAAAGGAAGTTGACGGC
CTGGGTTTGGAGGTTTGTGAGTAGGTTTTCCCCGACCATCAACGATAAGA
ACGTGGTTTGCTTGGTGAAGGGGCCTGAGGGGAAGATCTGCGGCCATCTG
CTGAAGTGGTCTTCATCAACCACGCAGGCCCAAAGAGGGTCGGGAACGAC
TGGCTTAGCCAAGCACCTCGAAAAATTTCACCCGGCCGTGGTCAAGGGTG
CGAAGGAGGAGACAGGCACCAAGGAGGAGAGGAAAGCACCAATTCGAGCG
GCAGTTGCGGGGCGTGAATCGCCGGAGGCGTCAGGAGGAACACCTCAGTC
GTCACTGCTAGAGTACATGTCACGGAAGATGGACAAGAAG
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