mRNA_P-littoralis_Contig1131.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1131.25.1
Unique NamemRNA_P-littoralis_Contig1131.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1131.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1131contigP-littoralis_Contig1131:42319..45139 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1481
Hectar predicted targeting categoryother localisation
Exons4
Cds size759
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789459.630218-CDS-P-littoralis_Contig1131:42318..427381680789459.630218-CDS-P-littoralis_Contig1131:42318..42738Pylaiella littoralis U1_48CDSP-littoralis_Contig1131 42319..42738 +
1680789459.639842-CDS-P-littoralis_Contig1131:43136..433561680789459.639842-CDS-P-littoralis_Contig1131:43136..43356Pylaiella littoralis U1_48CDSP-littoralis_Contig1131 43137..43356 +
1680789459.6481693-CDS-P-littoralis_Contig1131:43813..439321680789459.6481693-CDS-P-littoralis_Contig1131:43813..43932Pylaiella littoralis U1_48CDSP-littoralis_Contig1131 43814..43932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789459.6577995-UTR-P-littoralis_Contig1131:43932..444751680789459.6577995-UTR-P-littoralis_Contig1131:43932..44475Pylaiella littoralis U1_48UTRP-littoralis_Contig1131 43933..44475 +
1680789459.6711543-UTR-P-littoralis_Contig1131:44962..451391680789459.6711543-UTR-P-littoralis_Contig1131:44962..45139Pylaiella littoralis U1_48UTRP-littoralis_Contig1131 44963..45139 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1131.25.1prot_P-littoralis_Contig1131.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1131 42319..43932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1131.25.1

>prot_P-littoralis_Contig1131.25.1 ID=prot_P-littoralis_Contig1131.25.1|Name=mRNA_P-littoralis_Contig1131.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=253bp
ETSAGGASGATGGGGSGATEGDASRASGGGASGASGGKGEGGQLRGTKRT
RDQVAPDLGQSERLVRPRRSPRLAAKQEVNDAQQSGRKRLAPATVTEVAA
EASSRRPKRARNGASGKAAQQAEAGGATSSGGGKGRGQSRRTGPVNTQGG
GHNRRVAGCAGTQGGEDGGQAPPMPGVPGDGGEGGQGSRDARGTLARART
AAPSGSSPVSRRKAKRRPGVFVFVLFDFSLARGPFADWGEKSHYANTALF
FF*
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mRNA from alignment at P-littoralis_Contig1131:42319..45139+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1131.25.1 ID=mRNA_P-littoralis_Contig1131.25.1|Name=mRNA_P-littoralis_Contig1131.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2821bp|location=Sequence derived from alignment at P-littoralis_Contig1131:42319..45139+ (Pylaiella littoralis U1_48)
GAGACCAGCGCAGGCGGTGCGAGCGGGGCTACGGGAGGAGGCGGCAGCGG
GGCTACGGAAGGAGACGCGAGCAGGGCTTCGGGAGGAGGCGCTAGTGGGG
CTTCGGGAGGAAAAGGCGAAGGTGGGCAGCTGAGGGGCACCAAGCGCACG
CGAGACCAAGTCGCTCCCGATCTCGGACAGAGTGAACGTCTGGTTCGCCC
TCGGCGCAGTCCGCGCCTGGCGGCGAAGCAGGAGGTCAACGATGCCCAGC
AGAGTGGCAGGAAGAGATTGGCGCCGGCGACCGTAACGGAGGTCGCGGCC
GAGGCCTCGAGCAGGAGGCCAAAGAGGGCGCGTAACGGCGCTTCGGGGAA
GGCGGCGCAACAAGCCGAGGCCGGGGGGGCCACCTCGAGCGGTGGAGGCA
AGGGCCGGGGGCAGAGCAGGGTGAGTAACAGCACCGCTTGGAAGTTGTAA
TGAAGGCGTGCATGACAGACGATAATTTTGTTGCAATCAGTATCTCGCAG
GAGAAGCGCTTCAGCCGTGGACTACTTCGAAGCATACTTGTGTATGATTT
TCTTTTTTTTTGCCTTCTGTGCACATGTGAGTACGCAAGAAGAGTCTGAA
ACAAAAAACGCCCCCACACAAGCGTCGTGTCTTATTTTAAACCTCGGGTT
CCAATGTGCACAGCCGCGATCTCTAATCTTAGCTAGACGCGCTCACTTGC
GGGCATGCTCTCCGCGCTTGGCGTCGTGTGTTGTTGACATGATACACTTG
CGATCTTCGGTGATTGAACTTTCACCATAAGACTACTGCCGTGCCCTACC
TTGTTCATATGATATCAGCGCACCGGGCCGGTCAACACCCAGGGTGGGGG
TCACAACCGGCGGGTAGCGGGTTGCGCGGGCACGCAGGGTGGAGAGGACG
GCGGCCAGGCACCGCCGATGCCGGGGGTGCCGGGAGACGGAGGCGAGGGT
GGCCAAGGCTCCAGGGACGCGAGGGGTACCCTGGCCAGGGCACGCACGGC
AGCCCCCAGCGGCAGCTCCCCCGTCTCGAGGCGGAAGGGCAAGAGGAAGG
CCAAGGCTTCGGGGCGGTGAGTTATTTTTGAAGTGCTCTAAGGTTTCGCT
GAGGGATGTGGGATAGTGATGTACTGCGGATTTTGTGGCACCTGACGTTG
TACTCGTAGCGCAATGGCTTTCGATTGTGACATGGAGAGGGGAGGTAGGT
TATGCCTCTACAGCAGTTCAACGGCCGCGGAAGGAGATGCTGTCGTATTT
CGGTAGATATTTGTGGCAGTGCAGTGATTTTTGTAGCTTTAGCAGGGTTC
CCGCCCGCCTCCGCTATTTTCTGTTCATCACACTCACTTTGAGGGGAGCG
CGACTTTTCGAGATGACAGTAGTAACATATCAGATATCGAGCGCGTGCAG
CAGCTTTCCATATGTGTGGAGTGTTGTACTGAAAGCTGCAATCCCTTGCC
GCCCCGTGTTTCCTGACGTGCCTGTTGTCGCTTATCTTCACACAGCTAAA
CGGCGGCCCGGAGTTTTTGTTTTTGTTTTATTTGATTTTTCTTTGGCGCG
AGGGCCTTTCGCTGATTGGGGAGAGAAGAGTCATTACGCCAACACGGCTC
TGTTTTTTTTCTGACTTTTTTTGTTTCTGCAGGATTTGCAAGTTGTCTCG
GGGTTGTTCATGTGAGAGGGTGGATTTCGCCGACAAGCTGTTGGAAACCA
AGTTGTTTTTGGTTTACGTGTGATACTGCGACATCGGCATCTTCTCCCTT
GCCTTCTTTGATCCATGGAGATTTTGGCAGCAGCACTGTGCACGGTGCAA
GACGAGCGGGCGGGACGTGAGACCAAACATGATTTTTCGGCGCCGGTGGG
TTATTTTGATTTTTGGCAAGAAGGAGTCGCGCGGACGCTGGACACCACTC
GGGAGCCGTGGTGGTTGCTTGCACGTCGCGTTTTGGGTGTAGCAGATGAG
TGAGCGTTGAGGCATTGGGCATGTTGTGGGCGCGTGATTGCCGCTTCTGC
TGGGAGATGCGGTTAGGGGGGAGGGCGGGCCTCCTTGTCGGGCAAGTTCG
TCGGCGGCCGGCTGTTTGGAGACCTGGCGCAAGGTTGCAGTGCTGCTGTT
GTCGCTGCTGCTGCTGCTTGCCAAGTACCAGTTCACATCGCACGGTCAGA
GGAGCAGGTGAGAATGGCGCATTGGCGTGCTACCGCAGCGGCGGCGCCAA
ACCTCACAAATCACATGTGATGGTAGACCACGAGGTGTACCGTACGTATC
ATGCTTGTACTGCTGCATTGTAAAACAAAGGCGGGAAGCATGATATGTGT
CTTGTTTTGTTTTGTTTCTGTGCGCCCGGTGATGTTGTTTTCTCGCGTGT
GTTGCGTGTTGGTTTCGGAGTCCTTTTCCCGGTAAAACGTGTGCTCTGTA
CCGGTGGTTGCGATGCTGCTCGCAAGAGAGACGCCGCCATGTAAGGGGCA
GGGGGGCACCGCCTGGGCGAGTGATATTACGCTCCATTGCACAATCCAGG
GGAAATGAAACTACCACGCGGCGGGGGCAGTATGGTTGCATCGCAGGAGT
GAGCATTGATGAGTGAATTATTTCTTGTATTTTAAGCCCTGCCCCTCCCT
CCCTGATCTTGCCTCTGGCCTCTTTATATCCCGTCCGGCCACAGGATATG
GGGTAACTGGTGCCGCTCAAGCCTGCCGCACACCCACCCCGACTCTGCGT
CTCCACAGCTGCCGCGAAGCCGGGAGCAGAGTGGATCAGGACTATTCCGA
GCTGACCTGGCCCGCTGCGATCGTCAGGGGTGGATGCGAGGGCTGGCTCC
TGTCCCCGGCTTTATTGGGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1131:42319..45139+

>mRNA_P-littoralis_Contig1131.25.1 ID=mRNA_P-littoralis_Contig1131.25.1|Name=mRNA_P-littoralis_Contig1131.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=759bp|location=Sequence derived from alignment at P-littoralis_Contig1131:42319..45139+ (Pylaiella littoralis U1_48)
GAGACCAGCGCAGGCGGTGCGAGCGGGGCTACGGGAGGAGGCGGCAGCGG
GGCTACGGAAGGAGACGCGAGCAGGGCTTCGGGAGGAGGCGCTAGTGGGG
CTTCGGGAGGAAAAGGCGAAGGTGGGCAGCTGAGGGGCACCAAGCGCACG
CGAGACCAAGTCGCTCCCGATCTCGGACAGAGTGAACGTCTGGTTCGCCC
TCGGCGCAGTCCGCGCCTGGCGGCGAAGCAGGAGGTCAACGATGCCCAGC
AGAGTGGCAGGAAGAGATTGGCGCCGGCGACCGTAACGGAGGTCGCGGCC
GAGGCCTCGAGCAGGAGGCCAAAGAGGGCGCGTAACGGCGCTTCGGGGAA
GGCGGCGCAACAAGCCGAGGCCGGGGGGGCCACCTCGAGCGGTGGAGGCA
AGGGCCGGGGGCAGAGCAGGCGCACCGGGCCGGTCAACACCCAGGGTGGG
GGTCACAACCGGCGGGTAGCGGGTTGCGCGGGCACGCAGGGTGGAGAGGA
CGGCGGCCAGGCACCGCCGATGCCGGGGGTGCCGGGAGACGGAGGCGAGG
GTGGCCAAGGCTCCAGGGACGCGAGGGGTACCCTGGCCAGGGCACGCACG
GCAGCCCCCAGCGGCAGCTCCCCCGTCTCGAGGCGGAAGGCTAAACGGCG
GCCCGGAGTTTTTGTTTTTGTTTTATTTGATTTTTCTTTGGCGCGAGGGC
CTTTCGCTGATTGGGGAGAGAAGAGTCATTACGCCAACACGGCTCTGTTT
TTTTTCTGA
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