mRNA_P-littoralis_Contig1130.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1130.4.1
Unique NamemRNA_P-littoralis_Contig1130.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1130.4.1 vs. uniprot
Match: A0A6H5KIS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-18
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    7 IGSNRRYASPPNRRGIAYLP------------GQTGHLRQFVEQYGVICAPLTDILRNKAFASKRARKCPIPWGEAADEAFNSIRSALASP 243
            I S   Y +P     IA +P            G TG+LRQFV  Y +  APLT+ILRNKAFASKRARK PIPW  A ++AF S+R  LASP
Sbjct:  218 IDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASP 308
[Close]
BLAST of mRNA_P-littoralis_Contig1130.4.1 vs. uniprot
Match: A0A6H5K9Z4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z4_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.470e-18
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    7 IGSNRRYASPPNRRGIAYLP------------GQTGHLRQFVEQYGVICAPLTDILRNKAFASKRARKCPIPWGEAADEAFNSIRSALASP 243
            I S   Y +P     IA +P            G TG+LRQFV  Y +  APLT+ILRNKAFASKRARK PIPW  A ++AF S+R  LASP
Sbjct:  174 IDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASP 264
[Close]
BLAST of mRNA_P-littoralis_Contig1130.4.1 vs. uniprot
Match: A0A6H5JQV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV6_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.540e-18
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    7 IGSNRRYASPPNRRGIAYLP------------GQTGHLRQFVEQYGVICAPLTDILRNKAFASKRARKCPIPWGEAADEAFNSIRSALASP 243
            I S   Y +P     IA +P            G TG+LRQFV  Y +  APLT+ILRNKAFASKRARK PIPW  A ++AF S+R  LASP
Sbjct:  358 IDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASP 448
[Close]
BLAST of mRNA_P-littoralis_Contig1130.4.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.560e-18
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    7 IGSNRRYASPPNRRGIAYLP------------GQTGHLRQFVEQYGVICAPLTDILRNKAFASKRARKCPIPWGEAADEAFNSIRSALASP 243
            I S   Y +P     IA +P            G TG+LRQFV  Y +  APLT+ILRNKAFASKRARK PIPW  A ++AF S+R  LASP
Sbjct:  360 IDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASP 450
[Close]
BLAST of mRNA_P-littoralis_Contig1130.4.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.590e-18
Identity = 47/91 (51.65%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:    7 IGSNRRYASPPNRRGIAYLP------------GQTGHLRQFVEQYGVICAPLTDILRNKAFASKRARKCPIPWGEAADEAFNSIRSALASP 243
            I S   Y +P     IA +P            G TG+LRQFV  Y +  APLT+ILRNKAFASKRARK PIPW  A ++AF S+R  LASP
Sbjct:  882 IDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAFASKRARKLPIPWSVAEEDAFQSLRETLASP 972
[Close]
BLAST of mRNA_P-littoralis_Contig1130.4.1 vs. uniprot
Match: A0A6H5LDH3_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDH3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 5.430e-18
Identity = 46/91 (50.55%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:    7 IGSNRRYASPPNRRGIAYLP------------GQTGHLRQFVEQYGVICAPLTDILRNKAFASKRARKCPIPWGEAADEAFNSIRSALASP 243
            I S   Y +P     IA +P            G TG+LRQFV  Y +  APLT+ILR KAFASKRARK PIPW  A ++AF S+R  LASP
Sbjct:  505 IDSTGLYPAPSKLDAIARMPRPHTVEELRTLLGLTGYLRQFVPNYSLTAAPLTNILRKKAFASKRARKLPIPWSAAGEDAFQSLRDTLASP 595
[Close]
BLAST of mRNA_P-littoralis_Contig1130.4.1 vs. uniprot
Match: A0A6H5J659_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J659_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.370e-17
Identity = 46/91 (50.55%), Postives = 54/91 (59.34%), Query Frame = 1 
Query:    7 IGSNRRYASPPNRRGIAYLP------------GQTGHLRQFVEQYGVICAPLTDILRNKAFASKRARKCPIPWGEAADEAFNSIRSALASP 243
            I S   Y +P     IA +P            G TG+LRQFV  Y +  APLT+ILRNKA ASKRARK PIPW  A ++AF S+R  LASP
Sbjct:  400 IDSTGLYPAPSKLDAIARMPRPHTVEELRTFLGLTGYLRQFVPNYSLTAAPLTNILRNKAVASKRARKLPIPWSVAEEDAFQSLRETLASP 490
[Close]
BLAST of mRNA_P-littoralis_Contig1130.4.1 vs. uniprot
Match: A0A6H5JB61_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB61_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.830e-17
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:   34 PPNRRGIAYLPGQTGHLRQFVEQYGVICAPLTDILRNKAFASKRARKCPIPWGEAADEAFNSIRSALASPT 246
            P    G+    G T +LRQFV QY ++ APLT ILRNK FASKRARK PI W EA + AF+ +R  LASPT
Sbjct:   78 PRTVEGLRTFLGLTAYLRQFVPQYSLVSAPLTGILRNKDFASKRARKLPIQWEEAEEHAFHQLRQCLASPT 148
[Close]
BLAST of mRNA_P-littoralis_Contig1130.4.1 vs. uniprot
Match: A0A6H5K5Z9_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Z9_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.000e-17
Identity = 44/91 (48.35%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:    7 IGSNRRYASPPNRRGIAYLP------------GQTGHLRQFVEQYGVICAPLTDILRNKAFASKRARKCPIPWGEAADEAFNSIRSALASP 243
            I S   Y +P     I  +P            G TG+LRQ +    +  APLT+ILRNKAFASKRARK PIPW  A D+AF S+R  LASP
Sbjct:  117 IDSTGLYPAPSKLDAITRMPRPHTVQELHTFLGLTGYLRQLIPNCSLTAAPLTNILRNKAFASKRARKLPIPWSAAEDDAFQSLRETLASP 207
[Close]
BLAST of mRNA_P-littoralis_Contig1130.4.1 vs. uniprot
Match: A0A6H5JZ05_9PHAE (RT_RNaseH_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ05_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.760e-17
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1 
Query:    7 IGSNRRYASPPNRRGIAYLP------------GQTGHLRQFVEQYGVICAPLTDILRNKAFASKRARKCPIPWGEAADEAFNSIRSALASP 243
            I S   Y +P     IA +P            G  G +RQF+  + +  APLT+ILRNKAFASKRARK PIPW  A ++AF S+R  LASP
Sbjct:    3 IDSTGLYPAPSKLDAIARMPRPHTVEALRTFLGLAGCVRQFLPNFSLTAAPLTNILRNKAFASKRARKLPIPWPAAEEDAFQSLRETLASP 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1130.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIS6_9PHAE1.300e-1851.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9Z4_9PHAE1.470e-1851.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQV6_9PHAE1.540e-1851.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFK7_9PHAE1.560e-1851.65Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE1.590e-1851.65RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5LDH3_9PHAE5.430e-1850.55RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5J659_9PHAE1.370e-1750.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB61_9PHAE1.830e-1757.75RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K5Z9_9PHAE4.000e-1748.35RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JZ05_9PHAE5.760e-1747.25RT_RNaseH_2 domain-containing protein n=1 Tax=Ecto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1130contigP-littoralis_Contig1130:52075..52347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4432.XP_010262237.1
PFAMsRVP_2,RVT_1,Retrotrans_gag,rve,zf-H2C2
Model size275
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.14e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37NRU@33090|Viridiplantae,3GGV0@35493|Streptophyta
DescriptionL-threonine ammonia-lyase activity
Cds size273
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789459.59914-CDS-P-littoralis_Contig1130:52074..523471680789459.59914-CDS-P-littoralis_Contig1130:52074..52347Pylaiella littoralis U1_48CDSP-littoralis_Contig1130 52075..52347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1130.4.1prot_P-littoralis_Contig1130.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1130 52075..52347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1130.4.1

>prot_P-littoralis_Contig1130.4.1 ID=prot_P-littoralis_Contig1130.4.1|Name=mRNA_P-littoralis_Contig1130.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=91bp
VQIGSNRRYASPPNRRGIAYLPGQTGHLRQFVEQYGVICAPLTDILRNKA
FASKRARKCPIPWGEAADEAFNSIRSALASPTYFKKFKPK*
back to top

mRNA from alignment at P-littoralis_Contig1130:52075..52347-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1130.4.1 ID=mRNA_P-littoralis_Contig1130.4.1|Name=mRNA_P-littoralis_Contig1130.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig1130:52075..52347- (Pylaiella littoralis U1_48)
GTTCAAATTGGAAGCAATCGCCGCTATGCCTCGCCCCCAAACCGTAGAGG
AATTGCGTACCTTCCTGGGCAGACAGGTCACCTCCGTCAATTCGTCGAAC
AATACGGCGTGATCTGTGCTCCTCTCACCGACATATTGCGGAACAAAGCC
TTCGCATCCAAACGCGCGCGCAAGTGTCCCATACCATGGGGGGAAGCTGC
AGATGAGGCGTTCAATAGTATTCGATCTGCTTTGGCCTCACCCACTTATT
TTAAGAAATTTAAACCGAAATAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1130:52075..52347-

>mRNA_P-littoralis_Contig1130.4.1 ID=mRNA_P-littoralis_Contig1130.4.1|Name=mRNA_P-littoralis_Contig1130.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=273bp|location=Sequence derived from alignment at P-littoralis_Contig1130:52075..52347- (Pylaiella littoralis U1_48)
GTTCAAATTGGAAGCAATCGCCGCTATGCCTCGCCCCCAAACCGTAGAGG
AATTGCGTACCTTCCTGGGCAGACAGGTCACCTCCGTCAATTCGTCGAAC
AATACGGCGTGATCTGTGCTCCTCTCACCGACATATTGCGGAACAAAGCC
TTCGCATCCAAACGCGCGCGCAAGTGTCCCATACCATGGGGGGAAGCTGC
AGATGAGGCGTTCAATAGTATTCGATCTGCTTTGGCCTCACCCACTTATT
TTAAGAAATTTAAACCGAAATAA
back to top