mRNA_P-littoralis_Contig113.87.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.87.1
Unique NamemRNA_P-littoralis_Contig113.87.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig113.87.1 vs. uniprot
Match: A0A6H5K330_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 3.160e-38
Identity = 123/194 (63.40%), Postives = 130/194 (67.01%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTRQDREAIISCFKRKRGLRVWK*KIRYNCRKNLADKRLRVNGRFVKMSPEQRAALKVKQKALKNARAATXXXXXXXXXXXXXXXXXXXXELLAGEGVCSETGSGXXXXXXXXXXXXXXXXXSEEAEEGAMVDGAEDVEXXXXXXXXXXXXXXXXXXXXGTRAGRGGVSPKEPLKRLRRHSIAY 582
            MYNKNGRIGIYTRQ+REAII+ FKRKRG RVWK KIRYNCRKNLADKRLRV GRFVKMSPEQR ALK+KQK LK+ARAA                     ELL GE + SETGS XXXXXXXXX          E  E AMV+              XXXXXXXXXXXX     R GVSPKEPLKR+RRHSIAY
Sbjct:  514 MYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRTALKLKQKVLKSARAAAAASGATSMDM----------ELLGGEEMSSETGSXXXXXXXXXXVTAEGFDEGSEEAEDAMVE--------------XXXXXXXXXXXXXXAHARRGVSPKEPLKRVRRHSIAY 683
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BLAST of mRNA_P-littoralis_Contig113.87.1 vs. uniprot
Match: D8LD77_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 8.450e-32
Identity = 71/79 (89.87%), Postives = 75/79 (94.94%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTRQDREAIISCFKRKRGLRVWK*KIRYNCRKNLADKRLRVNGRFVKMSPEQRAALKVKQKALKNARAA 237
            MYNKNGRIGIYTRQ+REAII+ FKRKRG RVWK KIRYNCRKNLADKRLRV GRFVKMSPEQRAALK+KQKALK+ARAA
Sbjct:  384 MYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKALKSARAA 462
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BLAST of mRNA_P-littoralis_Contig113.87.1 vs. uniprot
Match: A0A835ZBX8_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX8_9STRA)

HSP 1 Score: 107 bits (266), Expect = 9.160e-21
Identity = 54/80 (67.50%), Postives = 66/80 (82.50%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTRQDREAIISCFKRKRGLRVWK*KIRYNCRKNLADKRLRVNGRFVKMSPEQRAALKVKQKALKNARAAT 240
            +YN+NGRIGIYT Q+REAII+ FK KR  RVW+ KIRYNCRKNLADKRLR+ GRFVKM+P QRAAL++++ A   A  A+
Sbjct:  294 VYNRNGRIGIYTAQEREAIIARFKAKRLRRVWRKKIRYNCRKNLADKRLRIKGRFVKMTPAQRAALQLQRAAEDGANGAS 373
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BLAST of mRNA_P-littoralis_Contig113.87.1 vs. uniprot
Match: A0A835Z588_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z588_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.770e-19
Identity = 49/68 (72.06%), Postives = 60/68 (88.24%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTRQDREAIISCFKRKRGLRVWK*KIRYNCRKNLADKRLRVNGRFVKMSPEQRAALKV 204
            +YN++GRIGIYT Q+REAII+ ++ KR  RVW+ KIRYNCRKNLADKRLRV GRFVKM+P QRAAL++
Sbjct:  284 VYNRSGRIGIYTLQEREAIIARYRAKRARRVWRKKIRYNCRKNLADKRLRVKGRFVKMTPAQRAALQL 351
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BLAST of mRNA_P-littoralis_Contig113.87.1 vs. uniprot
Match: A0A6S9FZK2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FZK2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.400e-17
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTRQDREAIISCFKRKRGLRVWK*KIRYNCRKNLADKRLRVNGRFVKMSPEQRAALKVKQK 213
            +YNKNGRIG+YT  +R AII+ F  KR  RVW  KIRYNCRKNLAD+R+RV GRFVK S EQ AAL  +QK
Sbjct:  291 IYNKNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAALAAQQK 361
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BLAST of mRNA_P-littoralis_Contig113.87.1 vs. uniprot
Match: A0A7S1Z2T2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2T2_TRICV)

HSP 1 Score: 93.2 bits (230), Expect = 2.640e-17
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTRQDREAIISCFKRKRGLRVWK*KIRYNCRKNLADKRLRVNGRFVKMSPEQRAALK 201
            +YNKNGRIGIYT  +R AII+ F  KR  RVW  KIRYNCRKNLAD+R+RV GRFVK S EQ A LK
Sbjct:  225 VYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLK 291
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BLAST of mRNA_P-littoralis_Contig113.87.1 vs. uniprot
Match: A0A7S2MN31_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MN31_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.710e-16
Identity = 46/71 (64.79%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTRQDREAIISCFKRKRGLRVWK*KIRYNCRKNLADKRLRVNGRFVKMSPEQRAALKVKQK 213
            +YN+NGRIG+YT  +R AII+ F  KR  RVW  KIRYNCRKNLAD+R+RV GRFVK S EQ AA+K  +K
Sbjct:  287 IYNRNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAAVKAVKK 357
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BLAST of mRNA_P-littoralis_Contig113.87.1 vs. uniprot
Match: A0A6U6FD34_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6FD34_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.860e-16
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTRQDREAIISCFKRKRGLRVWK*KIRYNCRKNLADKRLRVNGRFVKMSPEQRAALK 201
            +YNKNGRIGIYT  +R AII+ F  KR  RVW  KIRYNCRKNLAD+R+RV GRFVK S EQ A LK
Sbjct:  319 VYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLK 385
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BLAST of mRNA_P-littoralis_Contig113.87.1 vs. uniprot
Match: A0A7S3Y675_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y675_HETAK)

HSP 1 Score: 87.0 bits (214), Expect = 2.470e-16
Identity = 40/60 (66.67%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTRQDREAIISCFKRKRGLRVWK*KIRYNCRKNLADKRLRVNGRFVKMSP 180
            +YN+ GR+GIYT Q+R AI+  F++KR  R+WK KIRY CRKNLADKRLRV GRFVK +P
Sbjct:   59 LYNRGGRVGIYTPQERGAILERFRQKRERRIWKKKIRYGCRKNLADKRLRVKGRFVKSAP 118
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BLAST of mRNA_P-littoralis_Contig113.87.1 vs. uniprot
Match: K8YW04_NANGC (CCT domain-containing protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YW04_NANGC)

HSP 1 Score: 92.8 bits (229), Expect = 2.920e-16
Identity = 43/62 (69.35%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 MYNKNGRIGIYTRQDREAIISCFKRKRGLRVWK*KIRYNCRKNLADKRLRVNGRFVKMSPEQ 186
            +YNK+GRIGIYTR +R+AII+ F+ KR  RVWK KIRY+CRKNLADKR+RV GRFVK+ P++
Sbjct:  451 VYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRYSCRKNLADKRVRVKGRFVKLPPKE 512
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K330_9PHAE3.160e-3863.40CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LD77_ECTSI8.450e-3289.87CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZBX8_9STRA9.160e-2167.50CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835Z588_9STRA1.770e-1972.06CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A6S9FZK2_9STRA2.400e-1767.61Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1Z2T2_TRICV2.640e-1770.15Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2MN31_9STRA1.710e-1664.79Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6U6FD34_9STRA1.860e-1670.15Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3Y675_HETAK2.470e-1666.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
K8YW04_NANGC2.920e-1669.35CCT domain-containing protein (Fragment) n=2 Tax=N... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:365133..368319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1675
Hectar predicted targeting categoryother localisation
Exons3
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789459.0335758-UTR-P-littoralis_Contig113:365132..3662221680789459.0335758-UTR-P-littoralis_Contig113:365132..366222Pylaiella littoralis U1_48UTRP-littoralis_Contig113 365133..366222 -
1680789459.0616767-UTR-P-littoralis_Contig113:367563..3676241680789459.0616767-UTR-P-littoralis_Contig113:367563..367624Pylaiella littoralis U1_48UTRP-littoralis_Contig113 367564..367624 -
1680789459.073099-UTR-P-littoralis_Contig113:368209..3683191680789459.073099-UTR-P-littoralis_Contig113:368209..368319Pylaiella littoralis U1_48UTRP-littoralis_Contig113 368210..368319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789459.0427341-CDS-P-littoralis_Contig113:366222..3665171680789459.0427341-CDS-P-littoralis_Contig113:366222..366517Pylaiella littoralis U1_48CDSP-littoralis_Contig113 366223..366517 -
1680789459.0518196-CDS-P-littoralis_Contig113:367444..3675631680789459.0518196-CDS-P-littoralis_Contig113:367444..367563Pylaiella littoralis U1_48CDSP-littoralis_Contig113 367445..367563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.87.1prot_P-littoralis_Contig113.87.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 366223..367563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.87.1

>prot_P-littoralis_Contig113.87.1 ID=prot_P-littoralis_Contig113.87.1|Name=mRNA_P-littoralis_Contig113.87.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
MSPEQRAALKVKQKALKNARAATAAAGSGAPGGGGKGSASMDMELLAGEG
VCSETGSGETGSGSGASGEGFEDRGSEEAEEGAMVDGAEDVEEEEEEEEE
EEEEEEEEEEEDGTRAGRGGVSPKEPLKRLRRHSIAY*
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mRNA from alignment at P-littoralis_Contig113:365133..368319-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.87.1 ID=mRNA_P-littoralis_Contig113.87.1|Name=mRNA_P-littoralis_Contig113.87.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3187bp|location=Sequence derived from alignment at P-littoralis_Contig113:365133..368319- (Pylaiella littoralis U1_48)
ATGTACAACAAGAATGGGCGTATAGGCATCTACACAAGGCAAGATCGCGA
GGCCATCATCTCCTGCTTCAAACGAAAAAGGGGGCTCCGGGTTTGGAAAT
AGAAGATCAGGTATGGAGTTAATGTCGTCACAAACTACGAGAAAGTTTGC
GAGGCTTTCGGTCTTTGCAGCAAACACGCATCATATATAACCCCCGCGGC
CCTCATTCGTCGTCTGGTGCTTCACCTCTTGCCCCTATCTGTTTCGTCTC
TTTGTTGTCGACCCGGCCTTAATGATGCTTGATTCGTCCTGTTTCTTTCA
CCCCATTGCCGCCGTGCTATCATACATGCGTCCTCTCATCATTGTATGCG
ACCCGCTTGCTGTCAAACAACTCGATAAGGTGCCCCGCGGTCACATTTTC
AGACTTCGTGTTTTTGTCACTGTTTTTTCTCAGGGTTTCCTCTTTCACAC
GGATGCGACTGCCGCAAGTCTGCATTTATCTCCATCTCATCCACCGTACT
CGCACTACATCCGTAGCTCTCAGTCTGGATCATTTTCCATTTTTGGTTTG
GTTTGGCTTGGCTTATTTTAAGAAGTACGCTGAATGATCGTTTGTCCCTC
TTTCTGTTCGTTTTTTTGTTTTTTTTTGCGTACTGTAACATTTTTTGTTT
GCAGCCTTTCAACCTTATCTATGCTTCCGTTGTTACCCTACTTAGATACA
ACTGCCGCAAAAACCTGGCCGACAAGCGTCTCCGCGTCAACGGTCGGTTT
GTCAAGATGTCCCCGGAGCAACGAGCCGCCCTCAAGGTCAAGCAGAAGGC
GCTTAAGAACGCGCGCGCCGCCACAGCCGCAGCTGGTAGCGGAGCACCTG
GTGGCGGAGGGAAAGGCAGTGCCAGGTCAGCAAGCGCGTACAAGTAGGGG
TTTCGTTTAGACCAAGCGCGGAAGGGGAAGCGGAGGACCACCGTGTATCT
CGTTTGTTGTGTGCTACGGGCACTTTTGGCCTGGCTGCTGGAAGGAGACT
TGCCGACGGGGCCTTGTTGCTCTTGTTGGGGAACTGTTGTGTGTGGCGCC
CGAACACACGTGTCATGTGAGACGCACAGACAGGACAAAGGGGGGGCTGG
GCTGTGTCACTATCGTGGTCGTTGACTGCTTCGAGCTCCTTCCATGGAGC
TCATGTTATTACTCGCGTGTGTTGCTGTCAAACAAGAATCACCCCCATTT
CACGTTCTCTCCGTGCGCGGCGAAACGGGAGAAAGGGGCCGGCAATGGCA
ATCAGCAACCGCTTTAGTTTATTCTTTTGAAGTTTGCGGCCTCTAGCGTG
CTTTTTGTCTCTCATATTGATGCTCCAAGATGTGTGGACGTGTGTGGCTG
CTGCCTCTCGTGTTGATTTGATGTCATATGGTATCACGTGCCATTTGGTG
GAGTGGAAAACCTGACGACCTCATTCGATCTCTCCCTCTCTGCCGCCGTT
CGTGATAGTTGTCTGATGTTGTTGATTCTCACCTTACGTAGCTCACCACC
AAAGTGTGATGTCATGTGGTATGTCGTTTGTCGAACAGAAAACCTTCCGA
CCTCAATAATTGTCTCCCTCTCTGCTGCCGTTCGTGATAAGTGTGATGTC
ATGTGGTATATCGTTTGTCGAACAGAAAACCTTCAGACCTCAATAATTGT
CTCCCTCTCTACTGCCGTTCGTGATAAGTGCGATGTCATGTGGTATCATG
TGTCATTGTGTCGAGCAGAAATCCGGACAGCCCCTCATCTATTTCTCCCT
CTTTCTGCTGTATCCCCCCCGCGCGACCCGCCGCTAAATCCATTAACAAC
AGCATGGATATGGAACTGCTTGCCGGCGAGGGCGTATGCAGCGAAACAGG
CAGCGGCGAAACCGGCAGCGGGAGCGGCGCATCCGGAGAGGGCTTCGAGG
ATAGAGGTTCGGAGGAGGCGGAGGAGGGGGCAATGGTCGATGGCGCCGAA
GATGTAGAGGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGA
GGAAGAAGAGGAGGAAGACGGTACACGGGCTGGACGTGGAGGGGTGTCGC
CAAAGGAGCCACTCAAGCGCCTTCGGCGGCACAGTATTGCCTACTGACGT
TGTCGATCGATATAACAGATTGGGGTGGATCTGTTCGGTTCGGTTCGAAT
CGGTTCGGTTCTTTTTGTTTTTTGTCAAAGATTCCTGTCTCTGTCATCGT
TTCCTTCGAGTCCTTATCCCGCTTACTGTTTTGTTGGTGACGAGAGACAA
GTGACGGTTGAAGAACCCCTTCTGGTTTGAATCTCTTTCGAGTCATGACT
GGCCGGCAGGTCAGTTTGTTGATTAGTTGGTGACCGCCCTGTGATGGTTC
TGTCATTTCGTCTTGAAATGATTTGCGAGAGTGACCGTTTGTCTCCCGCG
AACAAAAGCCAAATGTCTTGCTGCACGTTTGTATTTAGGATGGATTTGTT
TTTGTGCGGCAATTCGGTCGACGGTGTATTTGGTCCGGTTAAACTGTTTC
CACATGTGAAAGTCGCGTCGCTTTGAGGTTTTGGCGGGAGGGGGGGGTTG
ATGTTCCTAGACTGTTGTTATGTTTCGTTGTCCTGACAACCGAATGGTCC
CTGTTGATCCGACATCATGCCACATGTGGCGTTTGTCCGTACTAAAGATA
TAAGAGGCGTGCAACTGTGTCCAAACTGAGAGGAGGCACATGTCTGTGTG
TCGGGTTGATTGCTGCTGTCGGTACGAAGCATAGCGGCTGGCTGGTCTCA
GCTTGCGGTCTCCCCGTCCCCCATCCTTGCTGCGCGACTTTTGTTTTTCA
AAGCTTGTGGTTCTGTGTATTTGTTTCCTGTTTTGATGTAGTGTTTAGAT
GTAGTGCGTTATGTTTTTTTCTGTTTCCCTGTTTGCCTGAGGTGGGGCGA
GATATAAGCCGGCCGAAACTCGTTCTCGTCTGTGCATAAAAATAACGAGT
TATCGATCTTTGCTGCTCATGTATGATACCTTTTGTTTATCATGTTGCGA
GCAAGGGCCACCATGTTTGTGCACAAACCGAGGCTCCCCAGTGCCATGGC
GGCTGTGAGGGGGTGTGACCGAGGGAGTGGGGAAGAGCGGGCTGGGTGAT
GAGAGGTGGGTGGGTGTGTCGTGAGGTGTTTCTGTTAACCAACAAAGTGT
ACAGCAAACAGCAATACCTTGGGACTTCTCAGCCTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig113:365133..368319-

>mRNA_P-littoralis_Contig113.87.1 ID=mRNA_P-littoralis_Contig113.87.1|Name=mRNA_P-littoralis_Contig113.87.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig113:365133..368319- (Pylaiella littoralis U1_48)
ATGTCCCCGGAGCAACGAGCCGCCCTCAAGGTCAAGCAGAAGGCGCTTAA
GAACGCGCGCGCCGCCACAGCCGCAGCTGGTAGCGGAGCACCTGGTGGCG
GAGGGAAAGGCAGTGCCAGCATGGATATGGAACTGCTTGCCGGCGAGGGC
GTATGCAGCGAAACAGGCAGCGGCGAAACCGGCAGCGGGAGCGGCGCATC
CGGAGAGGGCTTCGAGGATAGAGGTTCGGAGGAGGCGGAGGAGGGGGCAA
TGGTCGATGGCGCCGAAGATGTAGAGGAAGAAGAGGAGGAGGAGGAGGAG
GAGGAGGAAGAAGAAGAGGAAGAAGAGGAGGAAGACGGTACACGGGCTGG
ACGTGGAGGGGTGTCGCCAAAGGAGCCACTCAAGCGCCTTCGGCGGCACA
GTATTGCCTACTGA
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