mRNA_P-littoralis_Contig113.87.5 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.87.5
Unique NamemRNA_P-littoralis_Contig113.87.5
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig113.87.5 vs. uniprot
Match: A0A6H5K330_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 8.750e-42
Identity = 130/205 (63.41%), Postives = 139/205 (67.80%), Query Frame = 2 
Query:  440 STIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKALKNARAATAXXXXXXXXXXGEAGASMYMELLAGEDVCSETGSGETGSGSG--ATREGFEDRASGEAEAEGAMVDGADDVEEXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSPKEPLKRLRRHSIAY 1048
            S   YA+MYNKN RIGIYT QEREAII+R KRKRG RVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQR ALKLKQK LK+ARAA A               SM MELL GE++ SETGS           T EGF++   G  EAE AMV+               XXXXXXXXXXXXXX     GVSPKEPLKR+RRHSIAY
Sbjct:  507 SRSEYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRTALKLKQKVLKSARAAAA----------ASGATSMDMELLGGEEMSSETGSXXXXXXXXXXVTAEGFDE---GSEEAEDAMVE---------------XXXXXXXXXXXXXXAHARRGVSPKEPLKRVRRHSIAY 683
[Close]
BLAST of mRNA_P-littoralis_Contig113.87.5 vs. uniprot
Match: D8LD77_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 5.790e-33
Identity = 77/85 (90.59%), Postives = 80/85 (94.12%), Query Frame = 2 
Query:  443 TIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKALKNARAA 697
            T RYA+MYNKN RIGIYT QEREAII+R KRKRG RVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKALK+ARAA
Sbjct:  378 TTRYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKALKSARAA 462
[Close]
BLAST of mRNA_P-littoralis_Contig113.87.5 vs. uniprot
Match: A0A835Z588_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z588_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.250e-21
Identity = 55/72 (76.39%), Postives = 65/72 (90.28%), Query Frame = 2 
Query:  449 RYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKL 664
            +YA++YN++ RIGIYT QEREAII+R + KR  RVW+KKIRYNCRKNLADKRLRVKGRFVKM+P QRAAL+L
Sbjct:  280 KYADVYNRSGRIGIYTLQEREAIIARYRAKRARRVWRKKIRYNCRKNLADKRLRVKGRFVKMTPAQRAALQL 351
[Close]
BLAST of mRNA_P-littoralis_Contig113.87.5 vs. uniprot
Match: A0A835ZBX8_9STRA (CCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX8_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.410e-21
Identity = 56/76 (73.68%), Postives = 67/76 (88.16%), Query Frame = 2 
Query:  449 RYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKA 676
            +Y ++YN+N RIGIYT QEREAII+R K KR  RVW+KKIRYNCRKNLADKRLR+KGRFVKM+P QRAAL+L++ A
Sbjct:  290 KYTDVYNRNGRIGIYTAQEREAIIARFKAKRLRRVWRKKIRYNCRKNLADKRLRIKGRFVKMTPAQRAALQLQRAA 365
[Close]
BLAST of mRNA_P-littoralis_Contig113.87.5 vs. uniprot
Match: A0A7S1Z2T2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2T2_TRICV)

HSP 1 Score: 98.2 bits (243), Expect = 2.160e-18
Identity = 51/74 (68.92%), Postives = 57/74 (77.03%), Query Frame = 2 
Query:  440 STIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALK 661
            S  +Y E+YNKN RIGIYT  ER AII++   KR  RVW KKIRYNCRKNLAD+R+RVKGRFVK S EQ A LK
Sbjct:  218 SLSKYKEVYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLK 291
[Close]
BLAST of mRNA_P-littoralis_Contig113.87.5 vs. uniprot
Match: A0A6S9FZK2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FZK2_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.940e-18
Identity = 52/78 (66.67%), Postives = 60/78 (76.92%), Query Frame = 2 
Query:  440 STIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQK 673
            S  +Y E+YNKN RIG+YT  ER AII++   KR  RVW KKIRYNCRKNLAD+R+RVKGRFVK S EQ AAL  +QK
Sbjct:  284 SLSKYKEIYNKNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAALAAQQK 361
[Close]
BLAST of mRNA_P-littoralis_Contig113.87.5 vs. uniprot
Match: A0A7S2YJJ2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YJJ2_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.610e-17
Identity = 48/78 (61.54%), Postives = 59/78 (75.64%), Query Frame = 2 
Query:  449 RYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQKALK 682
            +Y E+YN+N RIGIYT  ER AII+R  +KR  RVW KKIRY CRKNLAD+RLRVKGRFVK S ++  A +L+ +  K
Sbjct:   45 KYKEVYNRNGRIGIYTPSERAAIIARFNKKRQRRVWNKKIRYGCRKNLADRRLRVKGRFVKRSEQELLAKELQARVEK 122
[Close]
BLAST of mRNA_P-littoralis_Contig113.87.5 vs. uniprot
Match: A0A7S3Y675_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y675_HETAK)

HSP 1 Score: 91.7 bits (226), Expect = 2.020e-17
Identity = 57/126 (45.24%), Postives = 71/126 (56.35%), Query Frame = 2 
Query:  281 AAAAARLQGMLGWKHGGC*DAHRTSEERRRPTPTTAVRQRATFEYLHVSQHDG------STIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKNLADKRLRVKGRFVKMSP 640
            AAAAA     LG        A      RR    + A       EY  + + +G      +  R+  +YN+  R+GIYT QER AI+ R ++KR  R+WKKKIRY CRKNLADKRLRVKGRFVK +P
Sbjct:    1 AAAAAAAPPALG--------ARDPQMARRESVDSVASAAEMVAEYQALEKQEGPLPLPHAFARFTHLYNRGGRVGIYTPQERGAILERFRQKRERRIWKKKIRYGCRKNLADKRLRVKGRFVKSAP 118
[Close]
BLAST of mRNA_P-littoralis_Contig113.87.5 vs. uniprot
Match: A0A7S2MN31_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MN31_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.610e-17
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 2 
Query:  440 STIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALKLKQK 673
            S  +Y E+YN+N RIG+YT  ER AII++   KR  RVW KKIRYNCRKNLAD+R+RVKGRFVK S EQ AA+K  +K
Sbjct:  280 SLEKYKEIYNRNGRIGVYTPAERAAIIAKFNGKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAAVKAVKK 357
[Close]
BLAST of mRNA_P-littoralis_Contig113.87.5 vs. uniprot
Match: A0A6U6FD34_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6FD34_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 4.530e-17
Identity = 50/74 (67.57%), Postives = 57/74 (77.03%), Query Frame = 2 
Query:  440 STIRYAEMYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKNLADKRLRVKGRFVKMSPEQRAALK 661
            S  +Y ++YNKN RIGIYT  ER AII++   KR  RVW KKIRYNCRKNLAD+R+RVKGRFVK S EQ A LK
Sbjct:  312 SLAKYKQVYNKNGRIGIYTPAERAAIIAKFNSKRSRRVWNKKIRYNCRKNLADRRMRVKGRFVKRSTEQAAQLK 385
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.87.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K330_9PHAE8.750e-4263.41CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LD77_ECTSI5.790e-3390.59CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z588_9STRA1.250e-2176.39CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835ZBX8_9STRA2.410e-2173.68CCT domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S1Z2T2_TRICV2.160e-1868.92Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A6S9FZK2_9STRA3.940e-1866.67Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2YJJ2_9STRA1.610e-1761.54Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3Y675_HETAK2.020e-1745.24Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2MN31_9STRA3.610e-1764.10Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6U6FD34_9STRA4.530e-1767.57Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:400800..408664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LD77
PFAMsCCT
Model size4773
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue2.54e-35
EggNOG OGs2E1UC@1|root,2S94C@2759|Eukaryota
DescriptionCCT motif
Cds size591
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.87.5prot_P-littoralis_Contig113.87.5Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 404535..406548 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789458.928996-UTR-P-littoralis_Contig113:400799..4018041680789458.928996-UTR-P-littoralis_Contig113:400799..401804Pylaiella littoralis U1_48UTRP-littoralis_Contig113 400800..401804 -
1680789458.9405205-UTR-P-littoralis_Contig113:401817..4045341680789458.9405205-UTR-P-littoralis_Contig113:401817..404534Pylaiella littoralis U1_48UTRP-littoralis_Contig113 401818..404534 -
1680789458.9812996-UTR-P-littoralis_Contig113:406548..4065581680789458.9812996-UTR-P-littoralis_Contig113:406548..406558Pylaiella littoralis U1_48UTRP-littoralis_Contig113 406549..406558 -
1680789458.991616-UTR-P-littoralis_Contig113:406974..4070661680789458.991616-UTR-P-littoralis_Contig113:406974..407066Pylaiella littoralis U1_48UTRP-littoralis_Contig113 406975..407066 -
1680789459.0032313-UTR-P-littoralis_Contig113:408306..4086641680789459.0032313-UTR-P-littoralis_Contig113:408306..408664Pylaiella littoralis U1_48UTRP-littoralis_Contig113 408307..408664 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789458.9528928-CDS-P-littoralis_Contig113:404534..4048351680789458.9528928-CDS-P-littoralis_Contig113:404534..404835Pylaiella littoralis U1_48CDSP-littoralis_Contig113 404535..404835 -
1680789458.962353-CDS-P-littoralis_Contig113:405674..4058541680789458.962353-CDS-P-littoralis_Contig113:405674..405854Pylaiella littoralis U1_48CDSP-littoralis_Contig113 405675..405854 -
1680789458.9728415-CDS-P-littoralis_Contig113:406438..4065481680789458.9728415-CDS-P-littoralis_Contig113:406438..406548Pylaiella littoralis U1_48CDSP-littoralis_Contig113 406439..406548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.87.5

>prot_P-littoralis_Contig113.87.5 ID=prot_P-littoralis_Contig113.87.5|Name=mRNA_P-littoralis_Contig113.87.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=197bp
MYNKNRRIGIYTWQEREAIISRLKRKRGLRVWKKKIRYNCRKNLADKRLR
VKGRFVKMSPEQRAALKLKQKALKNARAATAAAGSGAARGKGEAGASMYM
ELLAGEDVCSETGSGETGSGSGATREGFEDRASGEAEAEGAMVDGADDVE
EKEEDEDEEEEEEEEEEEEEDGARAGGGGVSPKEPLKRLRRHSIAY*
back to top

mRNA from alignment at P-littoralis_Contig113:400800..408664-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.87.5 ID=mRNA_P-littoralis_Contig113.87.5|Name=mRNA_P-littoralis_Contig113.87.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=7865bp|location=Sequence derived from alignment at P-littoralis_Contig113:400800..408664- (Pylaiella littoralis U1_48)
CAGCGTCAGCGGTGATGGTGGTGCGGATTTCGTTGCTATTGGCAGGTGTT
GAAGCTGTCTATCAATGCGATAAACAAGACCTGCTAAATCCGTTTCAAAG
CACTGCTGTTTGCTTACTCCGCAGTCACGCGCCCTGCCAGTATCTCCATA
CAATACTTGCGCCCGATCTATTTCGAAACGTTCTTCATTTTATTTTGTGT
CATGGAACATTTACGTCGTACATGCCAGCGACACGGCGCCCATGGGACGC
GTTCGCGGACGTGGAGGTCCGGGCCAGGAAGCGGCGGCGGCGGCGCGTCT
TCAAGGGATGCTGGGGTGGAAGCATGGAGGATGCTGAGACGCTCATCGGA
CTAGCGAGGTAAAGGGTAGGGTGGGGTGTGGAGGCCGAGGAGGAGGGGGG
TAGAGCGGGAGGGGCCGGAGCGGTAGGCGAAAGAGCGTATGGCGAATTCT
GGTTTTCTCTGCCGCACATGCTCTCGAAGTGAGTCAATCAGTCAGTCAGT
CCGTTGGGCAGGTGTGCCATGGTAACTTTGTTCCGCCGCCATACAGGCAG
GTTCACGCTGAAACAGCGAAATTGATTCAACACTGTCCCGAACGCAATTA
AACCCCGATTACGATCAATATGGTACCAAACTGACCGCCGTCAACAGCAC
AAGACCATGACATCGTTGGATTATTGCGTATTGCTTAGGCGGTGGCGGTA
GGGGAGCAAATGTGTCATTTTCACGGAATGTCGTGGTATAACACCCCCCT
GATGTTGATAAAAGGCAGGATTTCCACACTTAATGCTCAATGTATTAAGT
CTCGAGTATTAAACTTTTTCGAACAGTGATGGTGTCATTGGGACTCAAGC
AAGGTTTCAACGAAGGTTTTTTAATCAAATCCACAAACTGACGTCCGTTT
GCCTGTTTTCAGGAAAAAAGGGCCCAAAAAGGGCCGAACAGCACTTTATA
CCCGAGTAGCTAGGGTTTTTGCAGCACTTGACCTCACTAAAGTGCGTTCT
CTCACGCGAGTGTTTCGAGTCACACACTGGAACTTTGCACGTATGTTCGT
GTGGTCACCGCGCAACTTCCGACAATCGTTTTTTTATTTATTTATTTTGT
TCACCGAATTCCTGTGGTCCCAATCGACCCAAGCAGGAAATATAAACTTT
ATACTAAGATAACTATCGATGTTGATACAAAAAACGCGGTTGTTGGAAGT
CGCGCAGTAGTCCATAAAACACTCATGCAGTTTTTCACATTCTAACTCGA
AAAAACCGCGTGAGAAAACGATGTTGAATACGCAATCCTGATCTTGCGTG
AACCAGTCTGTAATGTTTCTTATTTTGTGCGTGCACTTACGGCTATAAAG
GGTGCTGCCGGAATACCGCTGTACCATAAGTCGACCCAAGTGTTGTTTGA
GCGCCTGAAACGTTAAGTGCGGTGTGTGTCTTCTCTCGTGGCAACTGCCG
TCGCCTGCTTGGTAGGTTGCTCGATCCGCCCTCCCCCCCCCCGGGGAGGT
GTTGTATTCCGTTTCATTTTCCGTGAGCCCGCAAGATTTTTCAGTCTGCC
CCAGGGGTCGTGATTTCTTCGGTGGAACCCTTGCCATGCACCACGCAGGA
GAGAAGGCGACCAACCCCCACTACGGCAGTACGCCAAAGAGCCACTTTTG
AGTACTTGCATGTTTCCCAGCATGACGGGTCCACCATCAGGTCAGTAAGA
GTGTTGGTTGAGGGGTACGACGGTTGCCCCCCCTCCCGCCCCCAAGCTTG
TGTTGAAGGTTCGGCCTAGCGTCTAATTTATTTGACTTCTTCAGTCTTTG
GAAGACCTCTTAAGTGAGTATGGCCGTACATTTTACAAGTACGTGTGCCG
TGACTGTTAATTGTTATGCGGAAACGGTCGGAGGAGGGAAGCGCGGCGGT
ATTTAGATCTACTGTCGCGGGGGTGTCGGGTGCCGTGAAGCCTTGTGGTC
GCCTTCCCTACAGCAGTAGTACTGCGATTGGCGTCGGTGAACACTTGATT
GTTGATTTGGTGGTTTTTTGTCGTTTTTTCACTCCTATCCTATCCTATTC
TTCGCCATGGCGTATCGGTTCGTTTTGTCTCGTCGCATAAAAACACTTCA
TGTCAGGTACGCCGAAATGTACAACAAGAACAGGCGCATCGGCATCTACA
CATGGCAAGAGCGCGAGGCCATCATCTCCCGCTTGAAGCGAAAAAGGGGG
CTCCGGGTTTGGAAAAAGAAGATCAGGTATGAAGTTGGTGTCGTCACAAC
CTGCGAGTAAGTTGGCGAGGCTTTCGGTCTTTGTAGCAAGCACGCATCAC
CAACCCCGCGGCCCTTATTCCTCGTCTGTCGCTCTACCTCTTGCCCCTCT
CTGTCTCGTCTCTTTGTTGTTGACCCGGCCTCAATGATGCTTGATTCGTC
CTGTTGCTTTTACCCCATTGCCACCGTGCTACCATACATGCGTCCTCTCA
TCATTGTATGCGGCCCGCTTGCTGTCAAACAACTCTACAATGTGCCCCGG
TCACAATTTCAGTTTTCGTGATTTTGTCACTGTCTTTCCTTTGAATTTCC
CTTTTCCAGGGATGCGACTGCCGCAAGACTCCATATTTTTAATCTCGTCA
ACCGTATATACTCGTGCTACATCCGTAGCTCTCAGTCTGGATCATGTTTT
CATTTTTGGTTTGGTCTGGCTCGGTTCATGTTACGAAATATTCCCAAGTA
TCATTTTCCCCCCCTTCTTTTCGTTTTTTTGTTTTTATTGCGTACTGGGA
CGTTTTGTATTTCCCAACCCTTCAACCTTTTTCCTATGCTTCCGTTGTTG
CCCTGCTCAGATACAATTGCCGCAAAAACCTGGCCGACAAGCGTCTCCGC
GTCAAGGGTCGGTTTGTCAAGATGTCCCCGGAGCAACGAGCCGCCCTCAA
GCTCAAGCAGAAGGCGCTTAAGAACGCGCGCGCCGCCACAGCCGCAGCTG
GTAGCGGAGCAGCTAGAGGCAAAGGCGAAGCCGGTGCCAGGTTAGCAAGC
GCGTACAAGTAGGGGTTTCGTTTAGACCAAGCGCGGAAGGGGAAGCGGAA
GACCACCGTGTATGTCATTTGTTGTGTGCGACGGGCACTTTTGGCCTGGC
TGCTGGAAGGAGACTTGCCGACGGGGCCTTGTTGCTCTTGTTGGGGAACT
GTTGTGTGTGGCGCCTGAACACACGTGTCATGGGAGACGAACTGGCAGAA
CAGGGGGGGCTGGGCTGTGTCACTATCGTGGTCGTTGACTGCTTCGAGCT
CCTTCCATGGAGCTCCTGTTATTGCTCGCGTGTGTTGCTGTTAAACAAGA
ATCACCCCCATTTCACGTTCTCTCCGTGCGCGGCGAAACGGGAGAAAGGG
GCCGGCAATGGCAATCAGCGACCGCTTTGGTTTGTTCTTTTGGAATTTGC
GGCCTCTAGCGTGCTTTTCGTCTCTCATGTATGATGCGCCAAGACGTGTG
GACGTGTGTGGCTGCTGCCTCTCGTGTTGATTTGATGTCATGTGGTATCA
CGTGCCACTCTGTGGAGTGGAAAACCTGACGACCTCATTCAATCTCTCCC
TCTCTGCCGCCGTTCGTGATAATTGTCTGATGTTGTTGATTCTCACCTTA
TGTAGCTCACCACCGAAGTGTGATGTCATGTGGTATATCGTTTATCGAAC
AGAAAACCTTACGACCTCAATAGCTGTCTCCCTCTCTGCTGCCGTACTTG
ATAAGTGTGATGTCATGTGGTATCATATGTCATTTTGTCGAGCAGAAATC
CTGACGACCTCTACTCTATTTCTCCCTCTTTCTGCTGTATCCCCCCCGCG
CGACCCGCCGCTGAATCCATTAACAACAGCATGTATATGGAACTTCTCGC
CGGCGAGGACGTATGCAGCGAAACAGGCAGCGGCGAAACCGGCAGCGGGA
GCGGCGCAACCAGGGAGGGCTTCGAGGATAGGGCTTCGGGGGAGGCGGAG
GCGGAGGGGGCGATGGTCGATGGCGCCGACGATGTAGAGGAAAAAGAAGA
GGATGAGGATGAGGAGGAGGAGGAAGAAGAGGAGGAAGAGGAGGAGGAAG
ACGGTGCACGGGCCGGCGGTGGAGGGGTGTCGCCAAAGGAGCCACTCAAG
CGCCTCCGGCGGCACAGTATTGCCTACTGACGTTGTCGATGGATCTATTG
GATTGGGGAGGATCTGTTCGATAAGGTTCGGTTCGGTTCTTTTTGTTTTT
TGTCAAAGATTCCCCGTGTCTGTCATCGTTTCTATTCGAGTCTCTATCCC
GCTTGCTGTTTAGTTGGTGACGAGAGACAACTGACAGTTGAAAAACCCCT
CTTGATTTGAATCTCTTCCGAGTCATGACTGGCCGGCAGGTCGGTTTGTT
GATTGGTTGGTGACCGCCCTGTAATGGTTCTGTCGTTTCGTTTTGAAACG
ATGTGCGGGAGTGACCGTTTGTCTCCCGCGAACAAAAACCAAACGTCTTG
CCGCACCTTGTTTTTTAGGATGGATTTGTTTTTGTGAGGTCATTCGGTCA
ACGGTGTATTTGATCCGGTCCAACTGTTTCCACATGTGAAAGTCGCATCG
CTTTGACGTTTTGGCGGGAGTAGGAGGTTAATGTTCCTAGACTGTTGTTA
TGTTTCGTTGTCCTGACAACCGAATGATCCCTGTTGATCCGACATCATGC
CACATGTGGCGTTTGTCCGTACTGAAGATATAAGAGGCGTGCGACTGTAT
CCAAACTGAAAAGAGGCATGTATCTGTGTGTGTGTCGTGTGTTTTGTGTC
GTGTGTTTCGTGTCTGGGAGTAGTGTTGTTTCATCGGTGTATCGGGTTGA
TTGCTGATGTCGGCTCGAATCAAAGCGGCTGGCTGGTCTCAGCTTGCGGT
CTCCCCCTCTCCTTTCCCTGTGCGCGACTTTTGTTTTGTTTGGGACTTGT
GGTCCTGTGTTGTTTTTCCTTTTTGATGAAGTTTGTTACGTGTTTTTTCC
TGTCTGTCTGTCTGCCTGCGGTGAGGCGAGAGATAAGGGCCGACACTCGT
TCTCGTCTGTGCATAAAAATAACGGGTTATCGACCTTTGCTTCTCATGTA
TGATACCTTTTTTTTGTCATTTTGCGAGCAGGGGCCACCTTGTTTGTGCA
CAAACCGAGGCTCCCCAGTGCCATGGCGGCTGTGAGGGGGTGTGGCGGAG
GGAGTGGGGAAGAGCGGGCTGGGTGATGAGACGGGGGTGGGTGTGTGAGG
TGTTTCTGTTAACCAACATAGTGTACAACAAACAGCAATGCCTTGGGACT
TTCCAGCCTTGGCCCTCTCCACCCCTCACGGTGTTGGGGGTGACGGGGAT
GGAGGCGGGGGCGGGCCTGTTGGGGATATTCATGCTCACTGATGGTTGTC
TTCTGCATTCGCCGTTGTTTTTGTTTTTGCATGCCCTCATGATATTCCCC
TCCCTTTTATGAGTATCATACCATGAGGAAAGAACACTTTTTTTCCGTAC
AACATATTTTTAATTATTTTGTTTCTAGGAGAGAGGAGGCCTTTGCATCA
ATCAGACGGTTAAGGCAAGTGTTACAGAATGTGCACGGGCCAGGCCGTGT
CTCGCGTGTTTAGTATGGGTGTGGGTATGCCCAAGCCATTAATGTGTGTC
GAGCTGCTGCTGAAAAACATTTTTTTATTTAAACCAGGGGGGGAGACGCG
GGAGGGTAGTATGCCTTCCCCTCTTTTGTTGTGTACAATTTTCATCGGGG
CTGCAGCGTGCTGCAGGAACGCAGTGCATTGCTCCAGCCTGGCTATCGAA
GGAGGTATCATACTGCAACAGCTGGTACGTTGCTTTTTTGAGGCAAGGAT
GGGGGCGGGTTTTCCATGTTGCCAGTGCAGATTCGCGCGGGTGCAAACTC
GGCCCTCAACCGTTTTAAGAATGTTACTTCCCGGGGGTCACGTCGGCAAA
AAGCTTGACCCGCATCCATCGAAGACCAGTGGTGGCAGCATGCTCCAGGA
GATCCCCGTGTGGTTTTACCCCGGCACAACTCGTCCCATGTACAACCTTT
TTACGACCAAGGGATAGCGGCAGATTTTTTCCGAGATGTTCCTCTGTGGT
TTTCCGAGGCAACTCGATCGATAGCCAATATTTTTGAGACCGCGTTCGTG
ACCAAATCGGTTTTCGTCGAATGGAGTGGTCGGGCTTTTGCCGGCGGTTT
GTTTAGCCTAGCCTCGCCTTTTTGCACCTGTACCTGCTGCGGTCCTGTTT
GAGTGTTTTTTGTTTTGCTCTGGCGGCGGCACTCCAAAAGCGAAACATGA
GGGGCTGGTGAGGGCCGTTGAGACCAGGGTGGTTTGGTCGTTCATCGTTT
TCACCGTGCACATAGGGGGGGAAGGGGATTGCATGACGAGAAATGTTCAA
TAAATGTTCGAAGGACCCCGTGATGCAAAAACGTGGTAGGGGAACGGGAG
GGCTGGCGGAGCTGGAGGGAGAGAGGTGTAGACGCGGGCATAGCGCGAAA
AGAGACGGAGAATGCGTGGGAAAATATTCCGTCTGCGATTGTATTTTTGT
GTGTTAGGTGGAAGCTGGTGTTCCAAAACCGGTGTTTCAAAAGCTGGTGG
TTCCACCATCAAGAGCGCTGGTAGCCATTCGTGTGCTGTCCCTGCGGAAT
CGAAACCAATTTCGTCCGGAGTAGTATCAGCCCAGCACTTTGGGAGGGCA
AATAGAATATAGGCCGAGATACTAGTTTTTTCCTTGCTATTGTGTAGGGG
CAGCTTCTGTTGCAGTTCATTGTCCATTTTTTTGTTTTTGTGATGATGCT
GATGGTCTTGTTGTAAAACGGTTGGCTTCCTGTACTCCCGCGGAAGCGCA
TGTGCATATGCATACATACTTACACATATCAAGTATTGAGACAGGGAAGA
GGTTTTGGGATCTTGTTCTCTTGTAGAATGTTTGATGAACGGTGCTTCAG
ATCCTCTCGGAAAATGAGAGTTACATATGCTTTATTCGAGGAAGAACATA
CACTAACGTATTACATTCATAACGTTAACGTCGAAGCAAGCTTCTCACTT
CGCTCTCTTACACCTACCTCCTCTTGAAACAGGGACTAGCTGCCAGGGAG
ACCGCTGCTTGATGAGGCGACACTATTTTCTATTCTTTCGCGGGGGTGGG
GGCAAGAAAAGAGGCTAGGTGAGCTGATTGTTGAGTTCGATCTGTTGTGA
ATAATGAGGTGCTTCGCTTTCGGCCGCGGATGTTCGTCATGCAAGCCTAG
ATCAGCCGTAGAGAGGGGTGCTCCCGAGCGTCAACTCGAAGACACTCAAT
CAGCCGAGCACCAACACTCCGGAAAAGCTTCTTGAGCAAAAATAGAGCCC
GGGATAAATGTGATACTTCGAAGTACATACTTTAGGGGTGCCCTGCACAA
AAAGAACAAAAGGAGAGAGAAGTAAAGGCGCACTACTTTACTGCTGCTAC
CACACTCGGTACAGCAGGTTTGATTTGTGACGGTGGACACGTGCGTTTGG
CTCACAGCCCCCGGGGTAATGGTGTGGTTCATTTCTTTCTTTATGGGTGT
TCGATGATGCCATTGTTGTTGTCATTGTGCCGCGTCGTCGTCGTCGTTTT
TCGTTGTCGTTGCTCTTTTTTTGTGTTTGAGCCTCATACTGCTTGTTTGT
ACGTTCGTTGTGGAGTAAAACAACGATTGAGTCGTCTCGTCGGGGACGAA
CAGAACGTGTGGGTTGGTGATATCGCCGGCGCCTCTGGTTGAACGATTTA
TCGTGTTTCCTGGAATAGGTGTATCAATACATGGTTACCCCCCTAGAAAA
ACCCCCTCAACCAGCGTTGTTCTAGAGGGCATTCCCTTACCACCTCTTTA
CCACCACCTCCACTCCTAGAAGGCCAGTTATTTTATTTCTTGAAAGGCAC
TACTCTTCTATAAAA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig113:400800..408664-

>mRNA_P-littoralis_Contig113.87.5 ID=mRNA_P-littoralis_Contig113.87.5|Name=mRNA_P-littoralis_Contig113.87.5|organism=Pylaiella littoralis U1_48|type=CDS|length=591bp|location=Sequence derived from alignment at P-littoralis_Contig113:400800..408664- (Pylaiella littoralis U1_48)
ATGTACAACAAGAACAGGCGCATCGGCATCTACACATGGCAAGAGCGCGA
GGCCATCATCTCCCGCTTGAAGCGAAAAAGGGGGCTCCGGGTTTGGAAAA
AGAAGATCAGATACAATTGCCGCAAAAACCTGGCCGACAAGCGTCTCCGC
GTCAAGGGTCGGTTTGTCAAGATGTCCCCGGAGCAACGAGCCGCCCTCAA
GCTCAAGCAGAAGGCGCTTAAGAACGCGCGCGCCGCCACAGCCGCAGCTG
GTAGCGGAGCAGCTAGAGGCAAAGGCGAAGCCGGTGCCAGCATGTATATG
GAACTTCTCGCCGGCGAGGACGTATGCAGCGAAACAGGCAGCGGCGAAAC
CGGCAGCGGGAGCGGCGCAACCAGGGAGGGCTTCGAGGATAGGGCTTCGG
GGGAGGCGGAGGCGGAGGGGGCGATGGTCGATGGCGCCGACGATGTAGAG
GAAAAAGAAGAGGATGAGGATGAGGAGGAGGAGGAAGAAGAGGAGGAAGA
GGAGGAGGAAGACGGTGCACGGGCCGGCGGTGGAGGGGTGTCGCCAAAGG
AGCCACTCAAGCGCCTCCGGCGGCACAGTATTGCCTACTGA
back to top