mRNA_P-littoralis_Contig113.72.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.72.1
Unique NamemRNA_P-littoralis_Contig113.72.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig113.72.1 vs. uniprot
Match: A0A6H5K3T2_9PHAE (TPM_phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K3T2_9PHAE)

HSP 1 Score: 404 bits (1037), Expect = 1.620e-136
Identity = 216/275 (78.55%), Postives = 238/275 (86.55%), Query Frame = 1
Query:   37 IMAPLRVTVCLVALAPLVSGFHIGA---LGSASSGVRTTTASTSSRNAALSPVVMAAGKNNQGSD--GAVTRTGALQRAAAAVLGAGLAFPSVVAVAPLEAQARKAGVDRPDLLPKEQTNVIDLVSMLTKGQAKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVDAGEDDRKSGAVNILNFNVGDGLRLGLPPQFWQRLQNKYGNRFYVRDNGPDGAIMSAVDSITVCLRSDTGFCVDPPDLKKMANDQAMLQGIGRR 846
            I+AP     CLVA+APL SGFH+ A   L   + G ++       R A  SPV+M AG NN G D  G VTRTGALQRAAA ++GAG+A P++VAVAPLEAQARKAGV+RPDLLPKEQTNVIDLVSMLTKGQ KRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVD+G+DDRKSGAVNILNFNVGDGLRLGLPPQFWQRLQNKYGNRF+VRDNG DGAI+SAVDSIT+CLRS+TGFCVDPPDLKK+ANDQA+L+ IGRR
Sbjct:    2 ILAPAHALACLVAIAPLSSGFHVPAGPALRQQAGGSKSI-----GRAAGWSPVMMTAG-NNDGPDTSGPVTRTGALQRAAAGLIGAGVALPALVAVAPLEAQARKAGVNRPDLLPKEQTNVIDLVSMLTKGQVKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVDSGDDDRKSGAVNILNFNVGDGLRLGLPPQFWQRLQNKYGNRFFVRDNGVDGAIISAVDSITLCLRSETGFCVDPPDLKKVANDQAVLESIGRR 270          
BLAST of mRNA_P-littoralis_Contig113.72.1 vs. uniprot
Match: A0A7R9YCX5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCX5_9STRA)

HSP 1 Score: 204 bits (519), Expect = 7.210e-60
Identity = 100/170 (58.82%), Postives = 122/170 (71.76%), Query Frame = 1
Query:  319 EAQARKAGVDRPDLLPKEQTNVIDLVSMLTKGQAKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVDAGEDDRKSGAVNILNFNVGDGLRLGLPPQFWQRLQNKYGNRFYVRDNGPDGAIMSAVDSITVCLRSDTGFCVDPPDLKKMANDQAML 828
            EA AR  GVD+P+LLPKE+ NV+DL  +LT GQ +R+ +Q + +EK TG R+R+L Q+YPETPGLAVKDYW VD+ TIV+V D G   RK    N+LNFNVGD  RL LPPQFW RLQN YGN+FYV +NG D AI+ AVD I  CLR   G+CVDP D  K+  +   L
Sbjct:   19 EAAARPEGVDKPELLPKEKVNVVDLEKLLTSGQRQRLEEQTKAIEKETGCRIRVLTQRYPETPGLAVKDYWAVDENTIVIVADKGGFGRKGAVTNLLNFNVGDNFRLSLPPQFWTRLQNSYGNKFYVEENGDDKAILRAVDVINSCLRR--GYCVDPRDALKVNEEFTSL 186          
BLAST of mRNA_P-littoralis_Contig113.72.1 vs. uniprot
Match: A0A7S4JNH9_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JNH9_9EUKA)

HSP 1 Score: 202 bits (515), Expect = 1.180e-58
Identity = 104/176 (59.09%), Postives = 127/176 (72.16%), Query Frame = 1
Query:  265 AVLGAGLAFPSVVAVAPLEAQARKAGVDRPDLLPKEQTNVIDLVSMLTKGQAKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVDAGEDDRKSGAVNILNFNVGDGLRLGLPPQFWQRLQNKYGNRFYVRDNGPDGAIMSAVDSITVCLRSDTGFCVDPP 792
            AVLG GL   S   + P  A AR  GV++P+LLP  QTNVIDL   LT GQ K ++KQL DLEKATG +LR+LCQ YP TPGLA+KDYW +DD++IV+VVD G+  +  G  NILNFNV DG++L LP QFW RLQ+ +GN F+VRDNG D AI  AVD+I  CLR +  +CVD P
Sbjct:   16 AVLGTGLLLAS--GLLPGAAFARPEGVNKPELLPSYQTNVIDLQRFLTSGQVKAMDKQLADLEKATGIKLRVLCQSYPNTPGLAIKDYWGLDDRSIVLVVDKGQS-KGGGVANILNFNVADGIKLSLPNQFWTRLQSTFGNNFFVRDNGEDIAITRAVDTIDYCLRDELAYCVDVP 188          
BLAST of mRNA_P-littoralis_Contig113.72.1 vs. uniprot
Match: A0A6V1T667_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1T667_HETAK)

HSP 1 Score: 194 bits (494), Expect = 1.800e-55
Identity = 96/166 (57.83%), Postives = 124/166 (74.70%), Query Frame = 1
Query:  301 VAVAPLEAQARKAGVDRPDLLPKEQTNVIDLVSMLTKGQAKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVDAGEDDRKS--GAVNILNFNVGDGLRLGLPPQFWQRLQNKYGNRFYVRDNGPDGAIMSAVDSITVCLRSDTGFCVDPP 792
            +AVAP  + AR  GV++P+LLP EQTNVID V MLTKGQ  R++K L  LEK TGY+LR+LCQ YP TPGLA++D+W VD+KT+V+V D G   R +  G  N+LNFNVG GL L LP +FW RLQ++YGN+F+V D G D A+++AV++I  CLR   G+CVD P
Sbjct:   63 IAVAPAVSIARPEGVNKPELLPSEQTNVIDTVKMLTKGQVGRLDKLLAKLEKDTGYKLRVLCQSYPNTPGLAIRDFWGVDEKTVVLVADEGTFGRNAARGPANLLNFNVGSGLDLALPARFWVRLQSEYGNKFFVEDVGKDQAVLTAVEAIAYCLRQ--GYCVDVP 226          
BLAST of mRNA_P-littoralis_Contig113.72.1 vs. uniprot
Match: A0A7S3B305_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B305_9EUKA)

HSP 1 Score: 195 bits (495), Expect = 1.850e-55
Identity = 95/157 (60.51%), Postives = 116/157 (73.89%), Query Frame = 1
Query:  322 AQARKAGVDRPDLLPKEQTNVIDLVSMLTKGQAKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVDAGEDDRKSGAVNILNFNVGDGLRLGLPPQFWQRLQNKYGNRFYVRDNGPDGAIMSAVDSITVCLRSDTGFCVDPP 792
            A AR  GV++P+LLPKEQTNVIDL   LT GQ K I+KQL  LE ATG +LR+LCQ YP TPGLA+KDYW +DD++IVM+VD G      G  NILNFNV DG++L LP QFW RLQ+ +GN F+V++NG D AI  AVD+I  CLR +  +CVD P
Sbjct:   54 AVARPEGVNKPELLPKEQTNVIDLQRFLTSGQVKAIDKQLAALETATGVKLRVLCQSYPNTPGLAIKDYWGLDDRSIVMIVDKGT----KGTANILNFNVADGIKLSLPNQFWTRLQSTFGNNFFVKENGEDIAITRAVDTIDYCLRDELAYCVDVP 206          
BLAST of mRNA_P-littoralis_Contig113.72.1 vs. uniprot
Match: A0A7S1UBQ0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBQ0_9STRA)

HSP 1 Score: 191 bits (486), Expect = 1.710e-54
Identity = 94/162 (58.02%), Postives = 117/162 (72.22%), Query Frame = 1
Query:  322 AQARKAGVDRPDLLPKEQTNVIDLVSMLTKGQAKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVDAGEDDRKSGAVNILNFNVGDGLRLGLPPQFWQRLQNKYGNRFYVRDNGPDGAIMSAVDSITVCLRSDTGFCVDPPDLKKM 807
            A AR  GV++P+LLPKE+ NVIDL  +LT GQ  ++ +   + EK+TG +LR+L Q+YPETPGLA+KDYW VD+ TIV+V D G   RK  A N+LNFNVGD  RL LP  FWQRLQN YGN+FYV +NG D AI+ AVD+I  CL+   GFC DP D  K+
Sbjct:   58 ANARPEGVNKPELLPKEKVNVIDLEKLLTTGQRNKLQELTVETEKSTGVKLRILTQRYPETPGLAIKDYWGVDENTIVIVADKGGFGRKGVATNLLNFNVGDAFRLSLPATFWQRLQNFYGNKFYVEENGDDKAILRAVDTINACLKR--GFCNDPKDALKV 217          
BLAST of mRNA_P-littoralis_Contig113.72.1 vs. uniprot
Match: A0A7S0Q6K1_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q6K1_9EUKA)

HSP 1 Score: 187 bits (475), Expect = 7.350e-53
Identity = 96/172 (55.81%), Postives = 121/172 (70.35%), Query Frame = 1
Query:  280 GLAFPSVVAVAPL-EAQARKAGVDRPDLLPKEQTNVIDLVSMLTKGQAKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVDAGEDDRKSGAVNILNFNVGDGLRLGLPPQFWQRLQNKYGNRFYVRDNGPDGAIMSAVDSITVCLRSDTGFCVDPP 792
            GL+F ++    PL    AR  GV++P+LLP EQTNVIDL   LT G+ K ++KQL  LEK TG++LR+LCQ+YP TPGLA+KDYW +DD +IVMV D G    K  + NILNFNVG+G +L LP  FW RLQ+ +G  F+VRDNG D AI  A+D+I  CLR+  GFC D P
Sbjct:   38 GLSFAALPLALPLLPVHARPEGVNKPELLPTEQTNVIDLERYLTTGEVKNLDKQLAALEKETGFKLRILCQRYPNTPGLAIKDYWGLDDNSIVMVADKGT---KGNSANILNFNVGEGAKLMLPNTFWTRLQSTFGTTFFVRDNGEDVAITRAIDTIDYCLRA--GFCTDVP 204          
BLAST of mRNA_P-littoralis_Contig113.72.1 vs. uniprot
Match: L1J2R5_GUITC (TPM_phosphatase domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1J2R5_GUITC)

HSP 1 Score: 188 bits (477), Expect = 1.450e-52
Identity = 94/160 (58.75%), Postives = 121/160 (75.62%), Query Frame = 1
Query:  340 GVDRPDLLPK-EQTNVIDLVSMLTKGQAKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVDAGEDDRKSGAVNILNFNVGDGLRLGLPPQFWQRLQNKYGNRFYVRDNGPDGAIMSAVDSITVCLRSDTGFCVD-PPDLKKMAN 813
            GV+RPDLLP   + NVIDL   LTKGQ  +++K L  LE+ TGY++R+LCQ+YP+TPGLA+KDYW VDDKTIVMVVD G    K+G  NILNFNVG G+ L LPP FW RL+N +G  FYV++NG D A+++AVD++  CLR   GFC D P ++K++AN
Sbjct:  110 GVNRPDLLPPGPKVNVIDLEKFLTKGQVAKMDKLLAKLEEDTGYKMRVLCQRYPQTPGLAIKDYWGVDDKTIVMVVDRGSG--KAGQANILNFNVGQGVELALPPVFWTRLRNFFGTVFYVKENGEDAAVINAVDAVVGCLRQ--GFCTDVPKEMKEIAN 265          
BLAST of mRNA_P-littoralis_Contig113.72.1 vs. uniprot
Match: A0A1E7FLC3_9STRA (TPM_phosphatase domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FLC3_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.150e-51
Identity = 95/183 (51.91%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  268 VLGAGLAFPSVVAVAPLEAQARKAGVDRPDLLPKEQ-TNVIDLVSMLTKGQAKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKV------DDKTIVMVVDAGEDDRKSGAVNILNFNVGDGLRLGLPPQFWQRLQNKYGNRFYVRDNGPDGAIMSAVDSITVCLRSDTGFCVDPPD 795
            ++ + LA P ++A  P  A AR   VDRPDLLP E+  NVI     LT GQA+RIN  L +LEK TG+R+++LCQ YP TPGLA++DYW +      DDK IV++VD     +  G  N+LNFNVGDG++  LP  FW RL  KYG  F+VRDNG D AI +A+++I  CLRS+ GFC  PPD
Sbjct:    4 IIASSLALPVIIAQ-PQTATARLEAVDRPDLLPAEKGLNVIQTEKFLTSGQARRINDMLGNLEKDTGFRVKVLCQNYPNTPGLAIRDYWSLGKDDQKDDKYIVLIVD-----QFGGRGNVLNFNVGDGIKFALPNVFWTRLSGKYGTTFFVRDNGIDVAIETAIEAIVTCLRSEDGFCTSPPD 180          
BLAST of mRNA_P-littoralis_Contig113.72.1 vs. uniprot
Match: A0A7S1DXX3_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DXX3_HEMAN)

HSP 1 Score: 181 bits (458), Expect = 1.170e-49
Identity = 90/165 (54.55%), Postives = 124/165 (75.15%), Query Frame = 1
Query:  340 GVDRPDLLPK-EQTNVIDLVSMLTKGQAKRINKQLEDLEKATGYRLRLLCQKYPETPGLAVKDYWKVDDKTIVMVVDAGEDDRKSGAVNILNFNVGDGLRLGLPPQFWQRLQNKYGNRFYVRDNGPDGAIMSAVDSITVCLRSDTGFCVD-PPDLKKMANDQAML 828
            GV++P+LLP+ ++ N+IDL   L+KGQ K+I+ +L  LE+ TG++ R+LCQ+YP+TPGLA+KDYW +DDK+IVM+VD G    KSG  NILNFNVG G+ L LPP F+ RL+N +G  FYV+DNG D AI +A+++I  CLR+D GFC D P D+K M N + + 
Sbjct:  117 GVNKPELLPEGDKVNIIDLEKFLSKGQVKKIDAKLAKLEQDTGFKFRVLCQRYPQTPGLAIKDYWGLDDKSIVMIVDRGTS--KSGMANILNFNVGAGVDLTLPPVFFTRLRNFFGTAFYVKDNGEDVAIENAIEAIVGCLRND-GFCTDVPQDMKDMRNKKGLF 278          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3T2_9PHAE1.620e-13678.55TPM_phosphatase domain-containing protein n=2 Tax=... [more]
A0A7R9YCX5_9STRA7.210e-6058.82Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S4JNH9_9EUKA1.180e-5859.09Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A6V1T667_HETAK1.800e-5557.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3B305_9EUKA1.850e-5560.51Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S1UBQ0_9STRA1.710e-5458.02Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0Q6K1_9EUKA7.350e-5355.81Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
L1J2R5_GUITC1.450e-5258.75TPM_phosphatase domain-containing protein n=2 Tax=... [more]
A0A1E7FLC3_9STRA2.150e-5151.91TPM_phosphatase domain-containing protein (Fragmen... [more]
A0A7S1DXX3_HEMAN1.170e-4954.55Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:306128..316305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LD75
PFAMsTPM_phosphatase
Model size1499
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
Exons9
Evalue1.94e-140
EggNOG OGs28NXC@1|root,2QVHQ@2759|Eukaryota
Ec32 ortholog descriptionthylakoid lumen 15.0 kDa protein
Ec32 orthologEc-05_001510.1
Cds size822
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.72.1prot_P-littoralis_Contig113.72.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 306778..316278 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789458.6672955-UTR-P-littoralis_Contig113:306127..3067771680789458.6672955-UTR-P-littoralis_Contig113:306127..306777Pylaiella littoralis U1_48UTRP-littoralis_Contig113 306128..306777 -
1680789458.7884042-UTR-P-littoralis_Contig113:316278..3163051680789458.7884042-UTR-P-littoralis_Contig113:316278..316305Pylaiella littoralis U1_48UTRP-littoralis_Contig113 316279..316305 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789458.6816106-CDS-P-littoralis_Contig113:306777..3068651680789458.6816106-CDS-P-littoralis_Contig113:306777..306865Pylaiella littoralis U1_48CDSP-littoralis_Contig113 306778..306865 -
1680789458.6927376-CDS-P-littoralis_Contig113:308067..3081751680789458.6927376-CDS-P-littoralis_Contig113:308067..308175Pylaiella littoralis U1_48CDSP-littoralis_Contig113 308068..308175 -
1680789458.7090185-CDS-P-littoralis_Contig113:308719..3087741680789458.7090185-CDS-P-littoralis_Contig113:308719..308774Pylaiella littoralis U1_48CDSP-littoralis_Contig113 308720..308774 -
1680789458.7184455-CDS-P-littoralis_Contig113:309203..3092671680789458.7184455-CDS-P-littoralis_Contig113:309203..309267Pylaiella littoralis U1_48CDSP-littoralis_Contig113 309204..309267 -
1680789458.7284615-CDS-P-littoralis_Contig113:310234..3103331680789458.7284615-CDS-P-littoralis_Contig113:310234..310333Pylaiella littoralis U1_48CDSP-littoralis_Contig113 310235..310333 -
1680789458.7365916-CDS-P-littoralis_Contig113:311270..3113511680789458.7365916-CDS-P-littoralis_Contig113:311270..311351Pylaiella littoralis U1_48CDSP-littoralis_Contig113 311271..311351 -
1680789458.7503726-CDS-P-littoralis_Contig113:311814..3119551680789458.7503726-CDS-P-littoralis_Contig113:311814..311955Pylaiella littoralis U1_48CDSP-littoralis_Contig113 311815..311955 -
1680789458.7626526-CDS-P-littoralis_Contig113:312567..3126711680789458.7626526-CDS-P-littoralis_Contig113:312567..312671Pylaiella littoralis U1_48CDSP-littoralis_Contig113 312568..312671 -
1680789458.7713697-CDS-P-littoralis_Contig113:316196..3162781680789458.7713697-CDS-P-littoralis_Contig113:316196..316278Pylaiella littoralis U1_48CDSP-littoralis_Contig113 316197..316278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.72.1

>prot_P-littoralis_Contig113.72.1 ID=prot_P-littoralis_Contig113.72.1|Name=mRNA_P-littoralis_Contig113.72.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=274bp
MEIIMAPLRVTVCLVALAPLVSGFHIGALGSASSGVRTTTASTSSRNAAL
SPVVMAAGKNNQGSDGAVTRTGALQRAAAAVLGAGLAFPSVVAVAPLEAQ
ARKAGVDRPDLLPKEQTNVIDLVSMLTKGQAKRINKQLEDLEKATGYRLR
LLCQKYPETPGLAVKDYWKVDDKTIVMVVDAGEDDRKSGAVNILNFNVGD
GLRLGLPPQFWQRLQNKYGNRFYVRDNGPDGAIMSAVDSITVCLRSDTGF
CVDPPDLKKMANDQAMLQGIGRR*
back to top

mRNA from alignment at P-littoralis_Contig113:306128..316305-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.72.1 ID=mRNA_P-littoralis_Contig113.72.1|Name=mRNA_P-littoralis_Contig113.72.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10178bp|location=Sequence derived from alignment at P-littoralis_Contig113:306128..316305- (Pylaiella littoralis U1_48)
CACAAATCGCGAAGCCTAGGCGTTCATATGGAGATAATCATGGCACCGCT ACGCGTCACGGTTTGCCTGGTGGCCCTTGCTCCGCTGGTATCGGGGTTTC ATATTGGCGGTGAGGTTTCAGGCGGTGGTTTTGCTTTCGTTGCGTCCTGC TGGTGGGAATGTTGACGCAGACGTTCCAGAGGGTTCCAAACGCACAGCAG AGCAGCGCCCATTCGAGCATATTATGTGAACATGCATACAGCAGTATCGT GCATGAGTAGTCTTTGTCAAACACCATTGCATGCATGGGCTACCGCATTT GCGCAAACTGCCATGTACCGTTGTGGGTCTCGCTGCAGTAACTGGGCTGC AGCAGATGCAGAGATTCAGCGATGGAGCAGTTTCCATCGTCGGCTGATAC GACGAAAGCTTTTGGATGCGATGGCATATCGTGGCACACTATATACAAGC ACAGCAGGACAGATTATGGATATCGTACTGCTGCTGTCTGCTGTCGCTGC TTTCTGTTGTTTCTGTGGCACACCGTTGTCTTGCTCTGTTTTTTTTGTTA TCCCAGTCACACCGCAGGTACTGCGTGACAGAGCAGCGGCTCGAGAAACA AATCTTCTCCCAGAGTTTCAATCTTGCTGTACAGCTGAACGGATCGTTGG AAACAACGGGTCTACAGCAGTGTAGTAGGAAAGAGGATGAGTGATTTTAG ATACTGCTGTACAACTGCCGTGACATGATTTTATATGTTCCACTTTCTTG TACTCCGGAGTATTTCGGAAGGAGGCTTTTTTAGGGGGGGGTCGGGATCA TGTGGGGAGCGCAGACACGCTACTGCCGCAGTGCGAGCTCTACCAACACC AGGCACGTGAGTGCGGAATAGTGTGCTCCTGAAGCAGCTGCCGGTCCTCG CCGGGTTTGAAGCCCTGGGAGATACGGTAGCAGGCGTGCATCATGATTAT GTGGCTAAATTTTGAGGGAAAATCGACCAGTTCCTGACAGGTTTTTATCG GCGCGCGCCCAAACTCGGGAACGAAGGGTCGCTCTAATGGCGCTCCGCTC GACCGTGGTGACAAGTGGTCCTTTGAACTATCATAATTTGCGGCTGGCCA AAAGAAGCAACGCAGGAGGATTGCTCGATACATGAGCTCTGCTTTTTGGC TATGCGGTCTATGAAGACATCAGCACACGGCCGTTCTGCTGTTCAATTGA TCCGCACACTGCTGTACTAAGCAGTACAGGTGTGTGCGGATTTATTGAAG TTAACCGCATTTTAAGCCAAAATGCAGAGCTCATGTATCGAGCATTCCTC CTGTATTGTTTTTTTTTTGCAAGCCGTAAATCGTGATAGTAGAAAGGACA ACCTATCAACAAGGTACGGCGGAGCGCCATCAGGGCGGCTCTTCGTTCCC GAGTTGGGGCGTGCGCGCCGATAGTAAACTCTCCGGAACGGGTGGACTTT CCCCTGAAATTTTAACACACAATAATATGCGCTCCCGCCTTATCTCCCAG GGCTTGAAATCCGGCCACGACCAGCAGCTGCTTAGCGCATTATTCCGAGC TTGGTTGCCTGGTGTCGGTAGAGCTCGTGCCGCAGTGACTCGCCAACAGG GTGTCTGCACTCCCCAGATGATCCCAACCCCCCCCTTCAAAATGCTTCCT TTCTGAATTGCAAATAGATGGAATCGTTCGAATTTGCGTATTTATGCTAC ATCTAATGCGTAAAAAACGTCATTATTGTTTTTGGGCCGTTTGAATAACA ACGTTTCCAACAGGCTTTGTAGAAAGACCCGATACTTTGTGTCAAACCCT AACAGCAGGTGGTTTTATTTTTTTTAATAAATTCCGAAAAAAAAGTCTCT CCTGTTCGGCTGGGACGGTTTGATGGTAGCCAACTTGACTCTCATTTTGC ACTGCTGTACCGATTCGCTCTTTCGTCCACCACTCTCGAACAAATGAAGC CACAGTAATGATAAGGACATGCCTCGCGAGCTGGGTATATGGTCCTTCGT CTCCCGTGGTTATGTCAGACCGCGAGGTATCGATAGACTAGCGAAAAAAC GTTGCAGGTATCATCGATGACGTGGGAAGAAACAAAAAAAAAATCGATGC AGCTCACCACCAGCAAAATTTCTTCTTTTTTCCACTGGCCGTCAATTCCT GCAATTCTTCTACGCCAGCCTATCGATGCCTCGCTTTTTCAGACGACCAC CGGAGGCGAGAGACCATGTCCACAGCTCGCGAGACATGACTTTACCATTG CTGTGGCTTCATTCGTTCGAGAGCAATCAACAAAAAACCAAACTGGTGTG GTGGCAAAAAAAACTGGTGCTGGTTGAAGAGTTCAGAGGACAGCAGCAGC AGCATCAGCTAGCTGCCAGCTCTCGTCCGATCCATTTTGGTTTTTGGTTC ATCGCCCTCGAACGAAATAATCCACGGCAATACTAAAGCCATCGGCCGTG AGGTGCACGTATGGTCCTTCTCCTGCGTCGGTCATCAGAGGCCGCGAGGA ATCGATGGGCTACCAAAACAATGTTTTCAGGTCATTTCATCATGCAAGGC TGACTGTAACTTGGGGTGTTCAAACGCCTTGACCCAAAAAAAATACGATG TTTCCGATGGCTGCAGGCTATCAGAAAAAGAACTTTTTCTGCTCGTTTGG GGCTTTCGGATTTTTTTTCTAAAAGTCGCTGACTAAAACGGCTGTTTCTG ATCACATGAGATGCTCGGTTTTGGGCCAATGTTCAAAACAGCCAAATCAT TAAAAAAAATGAACGGTTCCGACACATAAGATGTAGCCTTACTTGATTTT TTTTTTCAAGCGCAGCACCTATCCCCTTTGCCGTTCCTTTTGATTTGAAA TCACTACACGAAATTCCTGTAAAGGCCAGATGTAGGATACGGACGGAGTA CCCCAGAGTACATGTCAGGACACTCGAATCTTAGCGGTACATATGATGTG CGCGAAGCAGTACACTCTCTAAGGAGCATGCATCTCCAGCACTCCATTTG AGCAGCACGACAGCAGTGACCCTCGTCTCCGGTGGGATTTTGATACAAGT ATGCAAGACTACCCCCCCCCCCCAGCGTCGTTCACGGGTCCGAGTAGTTG TAATCCTAGGACTCTCTAATGAAGGCGATGATTGAGTACGAGGTACATGA TGAAGCAAGAGCAACCGAACGCGCTCCTGCTGTGCCATGCATGTGAAAAC CATTGAAAAGAGGGATTTTTAGAAAGCAATAAAAGTGTTTGATAGACGGG TGCCCAGAGTAAATGAGACGAAACACACACAATCAAACAACTGGGCAATG AGAAAGTTAGTTGTGTTTACTTTTCACAGGCGCAGCTTTGTTTCTACTTG TCATGAGTGACATGGATACGCATCGCACGCGGGCTATCATCCGTACACAC AGGCCTTGAAGAAGACATAGAAAGAGTGAGATCTACCTGTAGTCCCTCTT GGATCAGCCGCAGTCGGGTCTTACATGTCCGGTGGACCGCCAATGTTCTC TGTTTTTCTTCTTTTTTTTTTAGTAAAATCCACACACATGGGAGAGCCAC CCAGAGCCATTTCGGCGTCGTTCGTTCATTTGTTTCCACGTACGCGTCGT CCCTCTTGCGTCGCGTCATACACTACGGTCACAGCTCTGGGCAGCGCAAG CTCGGGAGTGAGGACCACCACCGCTTCCACCAGTAGCAGGAACGCAGCGT TGAGTCCCGTCGTGATGGCGGCCGGCAAAAACAATCAGGCAAGTGCACAT CCTAGCGCGACTGAATACCGGTGCTTTTTCTAGGCCTAAAATATCTGCGT GGCAACAGGTGTCGACCAACGTCATGCCAACAGCAGTGCTGAATCACCAC ACAGCGGTACACAGAGCAACTCGTGTTCTTTTTTTTTTTTTCACGTCCGT CGGTTATTCCGCAACGGTCAATACGAGATCGCGGCGAACGAGTGAGTCTG CCCGTGTCATACACAACAACAGCAGTACTGCTGTAGAACTGCTGCCGCAC CGGAGATATTCGGGTTTTTTTCGCAAGCCTCGCCCCTGCCTCGTTAGCTG GAGCGGCGGTGTGATAAACTGACGCTGCTCAAATGCGGTCCCACAAAACG GAGCAGGCCAGGATGTAATTGGTTTCCCGCCGGGGACAGCACGTCGGCGC TTTAGTCGTTGGTGAACTTCTTCCATTGCCTTGCAGCTGGAGTGCTGTGT AAAACTGCGATTGAACCAGCTGCACCTCCGCCCCCATTGCTGCGCCGCTG TAGATGGGAGCTTAGCCGCTGCGTCCCCCGTGCGGTTGGTTCCATCGTCG CACACCCCCGACCCCCCGCTCCGCTCCGCTCGCCGCGAAAAATAAGGCAG GGTTCTGACGGCGCGGTCACACGCACGGGCGCGCTTCAGCGGGCGGCGGC CGCTGTCCTCGGCGCCGGATTGGCGTTTCCCTCCGTCGTGGCGGTGGCTC CGCTGGAGGCGCAGGCGCGAAAGGCCGGAGTTGACCGTCCGGTGAGGAAT AAACGCGGGGAAACAGAAAAGAGACATGTATCAGCATGAAACGATAATGT ATTCTCCCACCCATTGTCTTGTGCGCGTTCGTCCTGCTCACGAAAGAGAG CCCAAGTCATCTCTTCATCGGTATGGCGGTATGAACAGAAGATTGGTGTG TGTGTGTATGCGTGCGTGTGTTTGAGTGTGGGGGGTGTAGAGTTCGTTGC TTTTCGCATGCTGTGCCTGGCGTGTTTTTCGTTTCATGCACGTTGCTGTT GCTGTTGCTGTTGCTGTTGCTGTTGTTGCTGCTGCTGCTGCTACCGCTGT CGCTACCACAGCCGCCGCTACACTACATTTGTGCTTCCTCCAACAATGTC GCCTTCGTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACTGAT ACTGCCGCTACTGCCCCGCTTATCGCTGACCATGTTTGTATTCCCGGCGC ACAGGATCTCTTGCCCAAGGAACAAACAAACGTGATCGACCTGGTTTCTA TGCTCACGAAGGGGCAAGCCAAGAGAATCAACAAGGTAGGTGTACGATGC TTTGAACTCGTAGTCCTCGCCCACCTTTGCTTGCACCGGATTCGCCGTCA CTGACCAAGGCAGAGGGTGGATACACAAAATATATACTCGTTCCGCGAGC ACCGGCCATGTCCTCAAACACGCACAAGAGACTAGCGTGAAGCGTCCCCG GTAAAGGATCACGGAAACTGAAGTAACAATTACAGCCTACTCAAGGGTCG GGCTTTCGCGGAAGAGCGAAAACTCGAAACCCACCGGGGAAACACTTGAA AACACGTATCAAACGGGTTGTCGGTTCTTCTGTACTGGCTAGAAAGTAGC GTAGGCGGTATTCACACATGGCCGCCAGGCGTCATGATTAATCTGATGCC GCGTTCTATCATCTCACAAATACACCTTAAACATCCCCCCCCCCCTCACC CGTTCCATTGTACAATACGGGAACTCTACATGTAGGCCGATCGCTAGCGG ACGTTTTTGCCAAAGCCGACGGCATAAGAGACAAACGGATCTTTGTAATG TTCGCCTTCCGCGGGGGTTAGAATGACCTCCAGGACATAGTTAACTGCCT TCGATTCCCATGTATGGATGCTATTTTGATGCAAGGTGTCTTGTGACCGG TTGTTTCGTACCTGCGCTGGATCAGGCTGGGCATACTTGCACTAGCGCTG ATTCAACACGTTACATCGGTCCCATGAACCTGTTAACCAAGCAATGCGGG CTTTCAATCTGGTACTCCTTATACCGGTATATCTTTCCCGCCCGCAACCA TTTTGCTGGCCGATGGACCTGATCTTACGATGTTCGCGACGATAAACCCG GGGCAATACATTCGGCGATAGCATAGCATGCGTTTTTGAAAACCGTCCCT TAATTTACACATGTCCCACGATTGTCGTACCGCCTTCATGATTGCGTTGT GTTTGGATTGTGTTCTCCACAGCAATTGGAGGACCTCGAGAAGGCCACGG GGTACCGGTTGAGGTTGCTCTGCCAGAAGTACCCCGAAACGCCCGGCCTG GCGGTCAAAGACTACTGGAAGGTGGGCGGAATCCAACCTGCACGTTCTGT ATGCTAGGTTTGGAAGTGCGGTCAGCACGTTTTTAGTGCACGTTCGCGCA TTTTTTTTTTTGTGTGTTTGGTGATGCGCTTTAGTCTGATCTGCCGGCAG ATTTCAGCGTGAATGACCCCTCGTCTTTGTGAAGACTTCTGTAAGACACA GAGGTTTCGTGTGCATCTTCCTCATCTCGCAGGCTCGCGTGACGATGGTT TACGGTAGAACATTTTGCAAGCATGTTTCCTTTGTGGTTGATCTTTCTCC CATCAAGACTGAGTTACAGAGATCGCGAGGTTGGCTGCACATATCGCAGC TCGCTGTAAGGGGTGGGTGGGGTGGCGAGGCTGCCCTGCGGGAAGAGCCC CATCAGTCTGTTCCCTAGCTCATCAGAGATAATCGATTGTCTCTCTCTCT CCATCCACCTTTCTTTCTCTTTCTCTCCGTTCAACATCTCTCCTTCTTTC CATGCCTATCTCTCTGTCTCTCTATCTCTCTCTCGTTGTTCAGTCTCTTG CCTGCGCACGATTTCCTCCAATACATGTCCCGCGTGAAATATTTTGAGCA CCGCTCGGCTCGAAAAGTAGGCCAGCGAAGGACGTCTCCCAGCCTGCTGG GCATGAAAAAAATTAAAAAAAAAAAAAAGACACTCGCGAACGACTGAGGA ACTTTCGATGCGGGTTTCGTGCTACAGTACCTCGCGCCCGTTTTCAGTCG CGCACATATAAACCATGCATGCAGGTATCAAATGTCGAATTGCCCCTGCA CTGGTGCGTCTTCCCGTGTTCACCTTCTGTTAGAGATTTACCACATTGAC GCGGACACCCGGCTTTTACGAAGTACACCGCTGTTTTGCTGCCTGAAATT GTGCGCCTCCAGCACTCATCCTGTAAGCAACAAGCATTCAGTACGTTGAT GATTGTGTGGCATGGTACCTTCACGTTGTCGACGGCAGGTTGATGACAAG ACGATCGTCATGGTCGTTGATGCGGGTGAAGACGACCGGAAGTCGGGGGC AGGTGAGGACGTTCGTCATGTGATGGTGTCGATGTCGTCGTTTTTGGAAT TACTGCAGCTTTGATTGAATTTGGGTTTGGTTGTTGTAGTGGTTGCTGTT GTGTTGTTGTTGTTGGTGGTGGTGGTAGTAGTGGTGGTGGCGGTGTTGTT CTTGATGCCTTCTTCGTCGTTGTTGTTGTCGTTGTTTTTGGTATCATTGT CGTATGTTGCTGTTTTCTTCGTAATCGTAATCGTATTGTTGCTGTTTTTG TCTTTGCTTGGACATCCGTGCTGGCCTCGACGCAGTGTCATAACTCTGGC AATACGTACGATACCCTCCGCCCCCAAAGCAGCGATTCGTGCCCCTCCCA CCCCCACATGCTCCTAATCTGATCCGTCCACTGTTATGTTCCCCGTCGAT TGATTTTTTGCACAATGATAAATGTTTCCAGTTAACATCCTCAACTTCAA CGTGGGAGACGGCCTGCGCCTCGGGCTTCCCCCTCAGTGAGTCGGGGCGA AAAACACAGCAGTATTAGCTGACTAGTCTCCAGGCTGATACCTGGATCAC CGGCTTGAGAGCGAGGTTTCGAAGGCGGGTTGGCGGGTTGGCCGTCATGG AAACAGCGTTTTTTTTCTAAGCTGAGCGTTTCACGGGAACAAAGTGCTTT CCAAGCGGGGCTCTTGTCACTGGCATAACGCGATGTCCCGGCTGATTTAG TCGTGAGAGCAAGATTTCCGAGCTCATCACACGTACCATGAGGAGTGGAG AGTTGTGAGACATTCCTGCCTCGGACAAATAGAGCTCTCCATCTGACCAG TTTGCTGCGAGTGTTTATTGGTGCTGGTGTTGATTATTCTTGTGGTTGAA CAATTTGTTGCTGTTGGTGGTGGTTCTGCCGTAAGATCGCCACCAGAAGT CGAGCCCATGTCTCGCCTGGGACATGAAGAAGGCACGCATCAACCCGTGC TGTATGAGGAGGGAGAATGCACGATACCTCCACGGTACTTGATTTTCATC TCCCCTGTTTTTTGTCTTTCCCCGATGCAGATTCTGGCAGCGGCTGCAGA ACAAGTACGGGAACAGGTTTTATGTCAGGGACAACGGCCCAGACGGCGCC ATCATGAGCGCGGTAGACAGCATCACCGTGTGCCTCCGGTATGCGAGGAA TCGACTCACATTATAGTTCTGCGGTAGTACGAAATACGAAGTAGTATTCT ACGGGGCGCCAAACACGGGCTCCCCCCCCAGCTGGCCCCCCGGGCCGATT CCTAACGCGAGATGCCCCCCCTCTTTAGGTTCTCAAACTCTGCTGCTGCT GCCGTACGTTTCGTGGCTGAAAAGTCGACGCGGTGCGTATGCGTTGTGCC CTTATCCACAAAGAAATGCCATGTATCTCTTTTGGAACACGAATTGGTTG AGTTTTTCGGTTGTGTCGAGTGCTGTTTTTTGTAGCCTACCCCAGCTGTT CGCTTCTCTTGTCTCACGACGTCGTATCGTGAACCCCTCCCGTTTTTTCC AAAATGATCCGTACGATTTTTTCCCCAAAGCGTGGTTTTCTAAACACGTC AACATGTCTTGCGAATAGCCCTTGGTCACAACAACTGCGGCACAGCTCAC AATAACTCAACGGAGCATGTGACAGTACCAACCAATGCTCAACCTCTGGG GCACGCAAGTCACATCCAACCCTGTAGGAGCTATTCTACACCCTCTGTTG GCGCTGTGACGTTTCTTGTATGGTGTCCTTCCTTTCGCTTCTGCAGACCG AGTCTGCCGCCGATGCCTCGTTAGTTTAACAGCACTTTTTTTACAGGCTT GTTTCCTCTCAACAAGCTCGTCATCTCAACAACAAACTCGTGCTTTGATG CGGGCAACAGCAACACCATCAAACAGGGACCATGCAATTTGATCCAAGGG TACGTTTTGAGAGCCCTGGCAGCAAGATTTGTGTGGCGCATCAATGGGGA GACCATCATCCAAAAGAGGGAAATTGTTGTTGTCAAAATTCCCCCCTCGT TTTAACACAACTTCTGTACTGCCGTACTGCACAAGCTTTAGCACGAGAGC ATTCAGTGCATGATTGGAAACCCTCTGTCTGCTGGCTCTGTTGCTAGCAT CTTTTATTGGAAAGCATGTTGGCATGCACCCAATTAGTCGCGTGCCGACC GTCGTGACCACGCACGATTAAGATGGGAGACAAGGAAGCCGACCGTTTCA AGGACACCCACCCTACTACATGCCGTTGCAAGTCTTTCCAGTTTGGTGTA AACTCGCTTGCTCAGCTGGCGTGTCCTTCTTTTGTTTATTCGTTTTTTTT TTTTTTGTATCACATCACATGCTGTTTTGTTTTTGATCAGATCCGACACC GGGTTCTGTGTGGACCCTCCGGACCTCAAGAAGATGGCGAACGACCAGGC TATGCTGCAGGGCATCGGGAGACGATAAAGTACAAACAGGAAGTTCGGTA GACGATGTAGAATTACAGAGCGGTCGATTTAGAAGAAAGTGCCGCGTGGG GCAGCTTCCCTGCCCTTAGCGTGTGGTGATTAGTATCGAACCTACGGAGG GTGGTTGGCCAGGATATTTGACGCGCACACATGTGATGTATGGGCACGTG GTGTGGACGCTAAGCGGTTCCATTGCCGGCCGAACTCTCTGTAGATGTAT TTCGGAGACCTGTTGATGAACACACGTTAGAGCTGTCACGACGGCAATAA CATTTGCATCATTTACGCGTGTGTGCATATTTGCGGCAGTTTTCGTGACA GCGCAGGTTCGACCGGAGGTTTGGGCCTTCTGTACTCGCAGAAATAAGTC TGAAGTTGTACTGCGGCAGGCTCTGTTAGAACGGGCGGGTGGGGCGTGAG GTCGGCAGTTGTCAACTGCTTTTGGAGCTGCACAAACTTTCCTTCTCGCG ATCTCGTCAGGTTAGCAGGGAGTTCTTGTCGAGCGTAGTGTATAACACAA TTTTTGTTTGAAGCAAAATAAAATGAATTCCAACCAAACGAAAGGATGCG ATTCCCCACCCAGGGAAAGACTCGAGGTGATCGATGCTTTAGTGGTCAAT GCTGTGAACCCCGTAACACAAAATCGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig113:306128..316305-

>mRNA_P-littoralis_Contig113.72.1 ID=mRNA_P-littoralis_Contig113.72.1|Name=mRNA_P-littoralis_Contig113.72.1|organism=Pylaiella littoralis U1_48|type=CDS|length=822bp|location=Sequence derived from alignment at P-littoralis_Contig113:306128..316305- (Pylaiella littoralis U1_48)
ATGGAGATAATCATGGCACCGCTACGCGTCACGGTTTGCCTGGTGGCCCT
TGCTCCGCTGGTATCGGGGTTTCATATTGGCGCTCTGGGCAGCGCAAGCT
CGGGAGTGAGGACCACCACCGCTTCCACCAGTAGCAGGAACGCAGCGTTG
AGTCCCGTCGTGATGGCGGCCGGCAAAAACAATCAGGGTTCTGACGGCGC
GGTCACACGCACGGGCGCGCTTCAGCGGGCGGCGGCCGCTGTCCTCGGCG
CCGGATTGGCGTTTCCCTCCGTCGTGGCGGTGGCTCCGCTGGAGGCGCAG
GCGCGAAAGGCCGGAGTTGACCGTCCGGATCTCTTGCCCAAGGAACAAAC
AAACGTGATCGACCTGGTTTCTATGCTCACGAAGGGGCAAGCCAAGAGAA
TCAACAAGCAATTGGAGGACCTCGAGAAGGCCACGGGGTACCGGTTGAGG
TTGCTCTGCCAGAAGTACCCCGAAACGCCCGGCCTGGCGGTCAAAGACTA
CTGGAAGGTTGATGACAAGACGATCGTCATGGTCGTTGATGCGGGTGAAG
ACGACCGGAAGTCGGGGGCAGTTAACATCCTCAACTTCAACGTGGGAGAC
GGCCTGCGCCTCGGGCTTCCCCCTCAATTCTGGCAGCGGCTGCAGAACAA
GTACGGGAACAGGTTTTATGTCAGGGACAACGGCCCAGACGGCGCCATCA
TGAGCGCGGTAGACAGCATCACCGTGTGCCTCCGATCCGACACCGGGTTC
TGTGTGGACCCTCCGGACCTCAAGAAGATGGCGAACGACCAGGCTATGCT
GCAGGGCATCGGGAGACGATAA
back to top