mRNA_P-littoralis_Contig113.52.3 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig113.52.3 vs. uniprot
Match: D8LD81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD81_ECTSI) HSP 1 Score: 862 bits (2227), Expect = 1.370e-293 Identity = 504/688 (73.26%), Postives = 534/688 (77.62%), Query Frame = 1
Query: 679 VKCDGKRPCRQCEKKEQECRFSLCQRSGPSRTMQP--VGPVSPVPIPQSGTLTAAXXXXXXXXXXXXXXXXXXXXXPPSIQMTAALSGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALNPTPAALTERPVGGDEEYRRQNARVAVIQGCITIGALLKGHTQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTSTISKAQVMAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVSILSENPGLLRQVMCWHLSHCMLVIFLEHGWFKEYELMRGIYNRLLEPEQGGQHFTVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATAAAQGRFAAASSAAGPQPVINMVTGEGFLNFDSEAGVNYSNSASSATAKPVSLPGFGSSGPFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAVHKGAVPTRAALSAMAAADAGKNRALADRRSAAGAPGYAPVAAATGLPGVGASAGGGVWSNCSDSAREKDG-VTPGMIQANTTASAPGNPSASATAQRTR 2733
VKCDG PCRQC++++ EC FS C RSGPS+ P P+ V + Q+G L A XXXXXXXXXXXXXXXXXX LSGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALNP PAALTER GDEEYRRQNARVAVIQGCITIGALLKGHTQ VGYLRNVREALTNSF FVSS+ +AYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELT+TISKAQVMAELNSLLPILTRADGMSRDN+SSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVV IL+ENPGLLRQVMCWHLSHC+LVIFLEHGWFKEYE+ R IYN LLEPEQGGQHF VWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEAT AAQGRFAAAS+AAGPQPVINMVTGEGFLNFDSEAGVN S+A+ KP SLPGFGSS G A+HKGAVPTRAA+SA++AADAGK R L+DR + Y P A G+PGVGASAGGG WS CS S RE +G V+P M QAN A+A G S+S+ RTR
Sbjct: 8 VKCDGTPPCRQCQRRQIECTFSPCARSGPSKVPPPNVASPIPGVGVSQNGALAATALAXXXXXXXXXXXXXXXXXXXXXXXXXXXLSGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALNPVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHTQGVGYLRNVREALTNSFHFVSSQKKNAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQVMAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILVIFLEHGWFKEYEITRNIYNSLLEPEQGGQHFAVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATVAAQGRFAAASNAAGPQPVINMVTGEGFLNFDSEAGVN----VSTASPKP-SLPGFGSSCSSGTGTSQASQGSPQPPVSMSSSFSVGQQHPQAMLMTPAAATTPA--------------------------ALHKGAVPTRAAMSAISAADAGKKRVLSDRTA------YVPSA---GVPGVGASAGGG-WS-CSGSVRESEGGVSPAMGQANAPANASG--SSSSVTPRTR 651
BLAST of mRNA_P-littoralis_Contig113.52.3 vs. uniprot
Match: D8LD86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD86_ECTSI) HSP 1 Score: 817 bits (2111), Expect = 4.500e-276 Identity = 461/581 (79.35%), Postives = 477/581 (82.10%), Query Frame = 1
Query: 931 SGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALNPTPAALTERPVGGDEEYRRQNARVAVIQGCITIGALLKGHTQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTSTISKAQVMAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVSILSENPGLLRQVMCWHLSHCMLVIFLEHGWFKEYELMRGIYNRLLEPEQGGQHFTVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATAAAQGRFAAASSAAGPQPVINMVTGEGFLNFDSEAGVNYSNSASSATAKPVSLPGFGSSGPFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPAVHKGAVPTRAALSAMAAADAGKNRALADRRSAAGAPGYAPVAAATGLPGVGASAGGGVWSNCSDSAREKDG-VTPGMIQ 2670
SGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDAL P PAALTER GDEEYRRQNARVAVIQGCITIGALLKGHTQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSA PKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELT+TISKAQVMAELNSLLPILTRADGMSRDN+SSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVV IL+ENPGLLRQVMCWHLS C+LVIFLEHGWFKEYE+ R IYN LLEPEQGGQHF VWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEAT AAQGRFAAASSAAGPQPVINMVTGEGFLNFDSEAGVN S+A+ KP SLPGFGS XXXXXXXXXXX A+HKGAVPTRAA+SA++AADAGK R L+DR + Y P A G+PGVGASAGGG WS CS S RE +G V+P M Q
Sbjct: 96 SGGGITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALYPVPAALTERSFHGDEEYRRQNARVAVIQGCITIGALLKGHTQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSAIPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQVMAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILVIFLEHGWFKEYEITRNIYNSLLEPEQGGQHFAVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATVAAQGRFAAASSAAGPQPVINMVTGEGFLNFDSEAGVN----VSTASPKP-SLPGFGSX--------------------------XXXXXXXXXXXQGSPQPPASMSSSFSVAQQHPQAMLMTPAASTTPAALHKGAVPTRAAMSAISAADAGKKRVLSDRTA------YVPSA---GVPGVGASAGGG-WS-CSGSVRESEGGVSPAMGQ 634
BLAST of mRNA_P-littoralis_Contig113.52.3 vs. uniprot
Match: A0A6H5K8W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W2_9PHAE) HSP 1 Score: 677 bits (1748), Expect = 1.890e-226 Identity = 343/373 (91.96%), Postives = 351/373 (94.10%), Query Frame = 1
Query: 943 ITSKVDVTYLNFFLKEFNAFVPLTTQDILRDALNPTPAALTERPVGGDEEYRRQNARVAVIQGCITIGALLKGHTQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTSTISKAQ---VMAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVSILSENPGLLRQVMCWHLSHCMLVIFLEHGWFKEYELMRGIYNRLLEPEQGGQHFTVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATAAAQ 2052
ITSKVDVTYLNFFLKEFNAFVPLTTQ ILRDALNP P ALTER GDEE+ NARVAVIQGCITIGALLKGHTQV YLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAE+LT+TISKAQ VMAELNSLLPILTRADGMS+DN+SSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVV IL+ENPGLLRQVMCWHLSHC+LVIFLEHGWF EYE+ R IYN LLEPEQGG HF VWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEAT AAQ
Sbjct: 11 ITSKVDVTYLNFFLKEFNAFVPLTTQGILRDALNPVPEALTERSFHGDEEF---NARVAVIQGCITIGALLKGHTQVAVYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEKLTNTISKAQANLVMAELNSLLPILTRADGMSQDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILVIFLEHGWFNEYEITRNIYNSLLEPEQGGGHFAVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATVAAQ 380
BLAST of mRNA_P-littoralis_Contig113.52.3 vs. uniprot
Match: A0A6H5K9S8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S8_9PHAE) HSP 1 Score: 345 bits (886), Expect = 3.290e-102 Identity = 225/431 (52.20%), Postives = 234/431 (54.29%), Query Frame = 1
Query: 1051 PAALTERPVGGDEEYRRQNARVA---VIQGCITIGA-----LLKGH------------------TQVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAA--------------------------------------------------------------------------------------------------------------------------------TRNYMEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQ----------VLNVLTYALYDLAHLAAEELTSTISKAQ-------VMAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVSILSENPGLLRQVMCWHLSHCMLVIF--LEHGW 1824
PAALTER GDEEYRRQ R + V+ C A + K H QVVGYLRNV EALTNSFDFVSSETMSAYMVTAYCHDLMGNAAA NYMEFA+AVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQ VLNVLTYALYDLAHLAAEELT+TISKAQ VMAELNSLLPILTRADGMSRDN+SSFG LGVVLVKGVLAYILLRLGRSQDGLEVLEPVV IL+ENPGLLRQVMCWHLSHC+L+ LE W
Sbjct: 2 PAALTERLFHGDEEYRRQVTRASDRGVLSACTMRKADGAKGVRKNHGALKVMRKAAVVSHNPPLPQVVGYLRNVLEALTNSFDFVSSETMSAYMVTAYCHDLMGNAAAIGRFLGVGCGSSPDDMIGKFAEQLEYTPSRWREGVVVNLFKKGDKTDPGNNRGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGFRKERGCVDHVFTVGRIIQGRKRAGKPTYTSTTQVALADYVGNYMEFAEAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQARSLESVRFMVLNVLTYALYDLAHLAAEELTNTISKAQASTMAFAVMAELNSLLPILTRADGMSRDNSSSFGTLGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILLALTKLESLW 432
BLAST of mRNA_P-littoralis_Contig113.52.3 vs. uniprot
Match: A0A6H5JUV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV1_9PHAE) HSP 1 Score: 252 bits (644), Expect = 2.520e-73 Identity = 133/143 (93.01%), Postives = 136/143 (95.10%), Query Frame = 1
Query: 1309 MEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTSTISKAQ-------VMAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGRSQDGLEV 1716
MEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELT+TISKAQ VMAELNSLLPILTRADGMS+DN+SSFGALGVVLVKGVLAYILLRLGRSQDGLEV
Sbjct: 1 MEFAKAVATQLPQVTVDHELVFQFYRVCSEVHNCTLSATPKLLQHAGAAAPCYQVLNVLTYALYDLAHLAAEELTNTISKAQASTMAFAVMAELNSLLPILTRADGMSQDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEV 143
BLAST of mRNA_P-littoralis_Contig113.52.3 vs. uniprot
Match: A0A6H5KC48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC48_9PHAE) HSP 1 Score: 166 bits (420), Expect = 3.080e-44 Identity = 76/84 (90.48%), Postives = 77/84 (91.67%), Query Frame = 1
Query: 1801 VIFLEHGWFKEYELMRGIYNRLLEPEQGGQHFTVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATAAAQ 2052
VIFLEHGWF EYE+ R IYN LLEPEQGG HF VWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEAT AAQ
Sbjct: 15 VIFLEHGWFNEYEITRNIYNSLLEPEQGGGHFAVWGRGHFQDATPFPPVDSLHSQGNSFLCSNPICKAINRDLSEGVEATVAAQ 98
BLAST of mRNA_P-littoralis_Contig113.52.3 vs. uniprot
Match: A0A6H5JRN3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN3_9PHAE) HSP 1 Score: 164 bits (415), Expect = 5.160e-41 Identity = 158/286 (55.24%), Postives = 173/286 (60.49%), Query Frame = 1
Query: 160 MASAAEQHAAQEKIAEALARQMEGQLAEPRAFQTPRAGAPPLQEXXXXXXGGLFLQPPLGMPPPRTQNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNED----PEARKARKKLRRACDYCTQKKVKCDGKRPCRQCEKKEQECRFSLCQRSGPSRTMQP--VGPVSPVPIPQSGTLTAAXXXXXXXXXXXXXXXXXXXXXPPSIQMTAALSGGGITSKVDVTYLNFFLKEFNA 999
MASAAEQHAAQEK+AE LA QMEGQLAEPRA Q P+AG Q+ GLFLQPP G+ P + N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXX X X PEARKARKK+RRACDYCTQKKVKCDG PCRQC++++ EC FS C RSGPS+ P P+ V + Q+G L A + M AALSGGGITSKVDVTYLNFFLKEFNA
Sbjct: 1 MASAAEQHAAQEKVAETLAGQMEGQLAEPRAMQAPQAGPRDQQQ-------GLFLQPPGGVVPAQNPNHLQQQPQLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARETGATTGSGQKKTAGARNGGGTXXXXVGXESDLXXXXXXXXXPEARKARKKIRRACDYCTQKKVKCDGTPPCRQCQRRQIECTFSPCARSGPSKVPPPNVANPIPGVGVSQNGALAATALAAAWDRP---------------LAMAAALSGGGITSKVDVTYLNFFLKEFNA 264
BLAST of mRNA_P-littoralis_Contig113.52.3 vs. uniprot
Match: D7FNW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW6_ECTSI) HSP 1 Score: 153 bits (386), Expect = 1.110e-39 Identity = 79/91 (86.81%), Postives = 83/91 (91.21%), Query Frame = 1
Query: 1558 MAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVSILSENPGLLRQVMCWHLSHCMLVIF--LEHGW 1824
MAELNSLLPILTRADGMSRDN+SSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVV IL+ENPGLLRQVMCWHLS C+L+ LE W
Sbjct: 1 MAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILLALTKLESLW 91
BLAST of mRNA_P-littoralis_Contig113.52.3 vs. uniprot
Match: A0A6H5JWQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ9_9PHAE) HSP 1 Score: 124 bits (312), Expect = 6.850e-30 Identity = 69/93 (74.19%), Postives = 75/93 (80.65%), Query Frame = 1
Query: 1558 MAELNSLLPILTRADGMSRDNASSFGALGVVLVKGVLAYILLRLGRS-------QDGLE---VLEPVVSILSENPGLLRQVMCWHLSHCMLVI 1806
MAELNSLLPILTRADG SRDN+SSFGALGVVLV GVLA ILLRLG S ++GL VLEPVV IL+E PGLLRQVMCWHLSHC+L +
Sbjct: 1 MAELNSLLPILTRADGRSRDNSSSFGALGVVLVNGVLASILLRLGLSVSTTSWMRNGLGNVWVLEPVVGILAETPGLLRQVMCWHLSHCILSV 93
BLAST of mRNA_P-littoralis_Contig113.52.3 vs. uniprot
Match: A0A6H5JSF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSF2_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.630e-19 Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 1
Query: 1168 QVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRNYMEF 1317
QVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATR +EF
Sbjct: 34 QVVGYLRNVREALTNSFDFVSSETMSAYMVTAYCHDLMGNAAATRYAIEF 83 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.52.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig113.52.3 >prot_P-littoralis_Contig113.52.3 ID=prot_P-littoralis_Contig113.52.3|Name=mRNA_P-littoralis_Contig113.52.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=860bp MASAAEQHAAQEKIAEALARQMEGQLAEPRAFQTPRAGAPPLQEQQQQQQback to top mRNA from alignment at P-littoralis_Contig113:206601..230494+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig113.52.3 ID=mRNA_P-littoralis_Contig113.52.3|Name=mRNA_P-littoralis_Contig113.52.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=23894bp|location=Sequence derived from alignment at P-littoralis_Contig113:206601..230494+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig113:206601..230494+ >mRNA_P-littoralis_Contig113.52.3 ID=mRNA_P-littoralis_Contig113.52.3|Name=mRNA_P-littoralis_Contig113.52.3|organism=Pylaiella littoralis U1_48|type=CDS|length=2580bp|location=Sequence derived from alignment at P-littoralis_Contig113:206601..230494+ (Pylaiella littoralis U1_48)back to top |