mRNA_P-littoralis_Contig113.71.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.71.1
Unique NamemRNA_P-littoralis_Contig113.71.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig113.71.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 7.270e-8
Identity = 25/40 (62.50%), Postives = 32/40 (80.00%), Query Frame = 3 
Query:  159 TKCNHIGCTKQPNYGVAGTKTAEFCSGHAKDGMVDVKSKR 278
            ++C H  CTK+P YGVAG+K  EFCS HA+DGMV+V +KR
Sbjct:    2 SQCGHANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 41
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BLAST of mRNA_P-littoralis_Contig113.71.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.170e-7
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 3 
Query:  147 GRMPTKCNHIGCTKQPNYGVAGTKTAEFCSGHAKDGMVDVKSKR 278
            G   ++C H  CTK+P YGVAG+K  EFCS HA+DGMV+V +KR
Sbjct:   58 GSRMSQCGHENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKR 101
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BLAST of mRNA_P-littoralis_Contig113.71.1 vs. uniprot
Match: D8LCH9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH9_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.450e-6
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:  165 CNHIGCTKQPNYGVAGTKTAEFCSGHAKDGMVDV 266
            C+H+GCT + N+GV G+K AEFCS HA+DGMVD+
Sbjct:    9 CDHVGCTTRANFGVPGSKKAEFCSRHAEDGMVDL 42
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BLAST of mRNA_P-littoralis_Contig113.71.1 vs. uniprot
Match: A0A6H5KZY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY0_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 4.110e-5
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1 
Query:  385 TTAGATNYR-------GCTKRPSYGVAGTKTAKFCSGHAKDGMVDVTNKRC 516
            TTAG    R       GCT+RPSYG A +KTA+FCS H+K  M++V  KRC
Sbjct:  105 TTAGHRGKRPLFCQEDGCTRRPSYGNASSKTAEFCSKHSKPAMINVVGKRC 155
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BLAST of mRNA_P-littoralis_Contig113.71.1 vs. uniprot
Match: D7FLW1_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLW1_ECTSI)

HSP 1 Score: 53.1 bits (126), Expect = 9.380e-5
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 3 
Query:  147 GRMPTKCNHIGCTKQPNYGVAGTKTAEFCSGHAKDGMVDVKSKR 278
            GR    C  IGC+ +P+YG   +K AEFCS HAK GMV+V  KR
Sbjct:  242 GRGQPSCEEIGCSMRPSYGKDNSKKAEFCSQHAKQGMVNVVHKR 285
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.71.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FI73_ECTSI7.270e-862.50EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE1.170e-759.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCH9_ECTSI1.450e-664.71EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KZY0_9PHAE4.110e-552.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLW1_ECTSI9.380e-554.55EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:300336..300959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size624
Hectar predicted targeting categoryother localisation
Exons1
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789457.332254-UTR-P-littoralis_Contig113:300335..3003441680789457.332254-UTR-P-littoralis_Contig113:300335..300344Pylaiella littoralis U1_48UTRP-littoralis_Contig113 300336..300344 +
1680789457.3533213-UTR-P-littoralis_Contig113:300710..3009591680789457.3533213-UTR-P-littoralis_Contig113:300710..300959Pylaiella littoralis U1_48UTRP-littoralis_Contig113 300711..300959 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789457.3406916-CDS-P-littoralis_Contig113:300344..3007101680789457.3406916-CDS-P-littoralis_Contig113:300344..300710Pylaiella littoralis U1_48CDSP-littoralis_Contig113 300345..300710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.71.1prot_P-littoralis_Contig113.71.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 300345..300710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.71.1

>prot_P-littoralis_Contig113.71.1 ID=prot_P-littoralis_Contig113.71.1|Name=mRNA_P-littoralis_Contig113.71.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=122bp
MQIKRTKKRACSGIGAETFIRTRGLSSRSVRSCRKNSSLAFSFAPRAGCR
PSVTILAAPSSRTMVSQVPRRRSSALDTPRTGWWTSKARGAPTVAAPSYR
AMVWRVPRRRSSALDTPRTGW*
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mRNA from alignment at P-littoralis_Contig113:300336..300959+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.71.1 ID=mRNA_P-littoralis_Contig113.71.1|Name=mRNA_P-littoralis_Contig113.71.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=624bp|location=Sequence derived from alignment at P-littoralis_Contig113:300336..300959+ (Pylaiella littoralis U1_48)
CGGCAGTGGATGCAGATCAAGAGGACAAAAAAAAGAGCGTGCAGTGGGAT
AGGAGCAGAAACGTTTATCCGAACCCGCGGTCTTTCCTCAAGATCAGTCC
GCAGCTGCCGAAAGAATAGCTCGCTAGCCTTCTCTTTTGCCCCGCGGGCA
GGATGCCGACCAAGTGTAACCATATTGGCTGCACCAAGCAGCCGAACTAT
GGTGTCGCAGGTACCAAGACGGCGGAGTTCTGCTCTGGACACGCCAAGGA
CGGGATGGTGGACGTCAAAAGCAAGAGGTGCACCCACCGTGGCTGCTCCA
AGCTACCGAGCTATGGTGTGGCGGGTACCAAGACGGCGGAGTTCTGCTCT
GGACACGCCAAGGACGGGATGGTGAACGTCATGAACAACAGCAGGTGCAA
CCAACTACCGTGGCTGCACGAAGCGGCCGAGCTATGGTGTCGCAGGTACC
AAGACGGCGAAGTTCTGCTCTGGACATGCCAAGGACGGGATGGTTGATGT
CACCAACAAGAGGTGCAACCACCGTGGCTGCACCAAGCAGCCGAGCTTTG
GTGTCGCAGGTACCAAGACGGCGGAGTTCTGCTCTGAACATGCCAAGGAC
GGGATGGTGAACGTCAAAGACCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig113:300336..300959+

>mRNA_P-littoralis_Contig113.71.1 ID=mRNA_P-littoralis_Contig113.71.1|Name=mRNA_P-littoralis_Contig113.71.1|organism=Pylaiella littoralis U1_48|type=CDS|length=366bp|location=Sequence derived from alignment at P-littoralis_Contig113:300336..300959+ (Pylaiella littoralis U1_48)
ATGCAGATCAAGAGGACAAAAAAAAGAGCGTGCAGTGGGATAGGAGCAGA
AACGTTTATCCGAACCCGCGGTCTTTCCTCAAGATCAGTCCGCAGCTGCC
GAAAGAATAGCTCGCTAGCCTTCTCTTTTGCCCCGCGGGCAGGATGCCGA
CCAAGTGTAACCATATTGGCTGCACCAAGCAGCCGAACTATGGTGTCGCA
GGTACCAAGACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGGATGGT
GGACGTCAAAAGCAAGAGGTGCACCCACCGTGGCTGCTCCAAGCTACCGA
GCTATGGTGTGGCGGGTACCAAGACGGCGGAGTTCTGCTCTGGACACGCC
AAGGACGGGATGGTGA
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