mRNA_P-littoralis_Contig113.56.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.56.1
Unique NamemRNA_P-littoralis_Contig113.56.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:233491..233836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FTH2
Model size346
Max annot lvl2880.D7FTH2|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000141
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789457.292125-CDS-P-littoralis_Contig113:233490..2338261680789457.292125-CDS-P-littoralis_Contig113:233490..233826Pylaiella littoralis U1_48CDSP-littoralis_Contig113 233491..233826 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789457.3033671-UTR-P-littoralis_Contig113:233826..2338361680789457.3033671-UTR-P-littoralis_Contig113:233826..233836Pylaiella littoralis U1_48UTRP-littoralis_Contig113 233827..233836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.56.1prot_P-littoralis_Contig113.56.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 233491..233826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.56.1

>prot_P-littoralis_Contig113.56.1 ID=prot_P-littoralis_Contig113.56.1|Name=mRNA_P-littoralis_Contig113.56.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
MSSASGAPTVAAPSARFGVLGTKTAEFCSGHAKDGMVNIMSERWNHRGCT
KHAKVCVAGAKKAEFCSGRTKGEIVQVVNDGCAQPGCTTLPNFGVTGSTQ
TFSVRHAGEGMA
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mRNA from alignment at P-littoralis_Contig113:233491..233836-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.56.1 ID=mRNA_P-littoralis_Contig113.56.1|Name=mRNA_P-littoralis_Contig113.56.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=346bp|location=Sequence derived from alignment at P-littoralis_Contig113:233491..233836- (Pylaiella littoralis U1_48)
GGAATGATGGATGTCCTCAGCAAGCGGTGCACCCACCGTAGCTGCACCAA
GCGCCCGCTTCGGTGTCTTAGGTACCAAGACAGCGGAGTTCTGCTCTGGG
CATGCCAAGGACGGGATGGTGAACATCATGAGCGAGAGGTGGAACCATCG
TGGCTGCACCAAGCATGCGAAGGTATGTGTTGCGGGTGCGAAGAAGGCGG
AGTTCTGCTCTGGACGTACAAAGGGCGAGATTGTGCAGGTTGTCAATGAC
GGGTGCGCCCAACCAGGTTGCACCACCCTTCCTAACTTCGGTGTGACGGG
CAGCACCCAAACCTTCTCCGTGCGACATGCTGGAGAAGGCATGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig113:233491..233836-

>mRNA_P-littoralis_Contig113.56.1 ID=mRNA_P-littoralis_Contig113.56.1|Name=mRNA_P-littoralis_Contig113.56.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig113:233491..233836- (Pylaiella littoralis U1_48)
ATGTCCTCAGCAAGCGGTGCACCCACCGTAGCTGCACCAAGCGCCCGCTT
CGGTGTCTTAGGTACCAAGACAGCGGAGTTCTGCTCTGGGCATGCCAAGG
ACGGGATGGTGAACATCATGAGCGAGAGGTGGAACCATCGTGGCTGCACC
AAGCATGCGAAGGTATGTGTTGCGGGTGCGAAGAAGGCGGAGTTCTGCTC
TGGACGTACAAAGGGCGAGATTGTGCAGGTTGTCAATGACGGGTGCGCCC
AACCAGGTTGCACCACCCTTCCTAACTTCGGTGTGACGGGCAGCACCCAA
ACCTTCTCCGTGCGACATGCTGGAGAAGGCATGGCG
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