mRNA_P-littoralis_Contig113.119.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.119.1
Unique NamemRNA_P-littoralis_Contig113.119.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:516297..518777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size936
Hectar predicted targeting categorymitochondrion
Exons4
Cds size468
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.119.1prot_P-littoralis_Contig113.119.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 516395..517696 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789457.1423583-UTR-P-littoralis_Contig113:516296..5163941680789457.1423583-UTR-P-littoralis_Contig113:516296..516394Pylaiella littoralis U1_48UTRP-littoralis_Contig113 516297..516394 -
1680789457.1864557-UTR-P-littoralis_Contig113:517696..5177681680789457.1864557-UTR-P-littoralis_Contig113:517696..517768Pylaiella littoralis U1_48UTRP-littoralis_Contig113 517697..517768 -
1680789457.197978-UTR-P-littoralis_Contig113:518479..5187771680789457.197978-UTR-P-littoralis_Contig113:518479..518777Pylaiella littoralis U1_48UTRP-littoralis_Contig113 518480..518777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789457.1521552-CDS-P-littoralis_Contig113:516394..5167741680789457.1521552-CDS-P-littoralis_Contig113:516394..516774Pylaiella littoralis U1_48CDSP-littoralis_Contig113 516395..516774 -
1680789457.1603172-CDS-P-littoralis_Contig113:517522..5175431680789457.1603172-CDS-P-littoralis_Contig113:517522..517543Pylaiella littoralis U1_48CDSP-littoralis_Contig113 517523..517543 -
1680789457.1740937-CDS-P-littoralis_Contig113:517629..5176961680789457.1740937-CDS-P-littoralis_Contig113:517629..517696Pylaiella littoralis U1_48CDSP-littoralis_Contig113 517630..517696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.119.1

>prot_P-littoralis_Contig113.119.1 ID=prot_P-littoralis_Contig113.119.1|Name=mRNA_P-littoralis_Contig113.119.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
MLVMLVRCRWRRGGRLGGSSSQGVGSFRRNGKRRRSKRAESAAAPIVKVN
SDTPNATGKPETPPSSLAATPTTSTAPNGRKRKRKGADPAAAPIIEADSG
TTTATDLENTFAGFAPSAAPAAASESGRSRSGRVIVKPRRATEFKGVASI
KDSDG*
back to top

mRNA from alignment at P-littoralis_Contig113:516297..518777-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.119.1 ID=mRNA_P-littoralis_Contig113.119.1|Name=mRNA_P-littoralis_Contig113.119.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2481bp|location=Sequence derived from alignment at P-littoralis_Contig113:516297..518777- (Pylaiella littoralis U1_48)
GGACCTGTGGGACAGACTAGGGAAAAAAGCATGTATGGACGCCTTAGTAG
ACAGAGACCACATAGGGTTTGGTGACTTGCGCTTTGTGGAGAGGGGAACG
CTGCCCCAGATTTTAGCCATCCACGGGACTTCGACGAAAGAGAGACGATG
GGATTGCTGGAGAGGATGCCGTAGATGAGGATCGCAGTGCCGCTGCTCAG
GAGAAGGAGACGTACGCGTCTGGCGGTATCGCCAGAGAGCACGAGATGAG
GAAGGCTGCTGCTGCTGGGGAGGAAGTGACCGATAAAGTTCGCCAAAGGT
GCGGTCCTTCCTGAAATGATTCATTGTTTATGTATGATTGATAAGTCTGT
CCCGCGTTGGCAATGGTACGGTGATGTTACGCTTTCGTGTCCGTAATTTG
GTTAATTGTAGAGCTTTCCCTCTATGATCAAGTACTTGTGGTATAGCGAG
AGACAGCGAGAGACATTGCCGTATGATAGGGTTAGTAGGAGACGACACCT
GCCGAAGCGATTTGAAATCACAGATACTACACCCGAAGAGAGTATCACCA
TCAAACGATACGTTTACTCTCGACGATACGTCTCTAATGCGCCCTTTACG
GCACCGGCACATGTTTGTGAATCGGTCCAGGGGGGTCCGTCGTATCTTAC
GGCACCCACGGAACACGCGCGTCACGCCGCCACACACACCACGCAGTAGA
GTTGTGTTCTGCTGTACAGCTGTATTCTGCTGTACTGCTGCTGCTATACT
GCTGCTGCTGTACTGCTGCTGCTGCTGCGCTGCTGTTACTGCTGTACTGC
TGCTGCTGCTACTTCGCTGCTGTTGCTGCTGCTGAGATGTGTAATGTATC
ATCTCGAAGTATCATACTCTCACTCAAGACGGAAAGCATAGCAGTGGCAC
ATTACAACAACACAATAACAGAAGTACAGCAAGACGAGAGCGTTGTGTGT
GCGGCAGGCTGAGGCGAAATGTGTAAATGCTGTGATGCGATATTTTAACA
CGAAAACAGGTCATATTATCATCACCTACAGGCGTCAACAACAAACAGTA
GTACAGCCGACCGTGGGAACGGACTGTAGACATGCTCGTAATGCTGGTGC
GGTGTCGCTGGCGTAGGGGTGGAAGGCTCGGGGGAAGCAGCAGCCAGGGC
TGATAATGTCGTGAGGGAAGCAGCGGCAGGTGGGCGGACTGCTGCTGCCG
TTGAGCGTGCTGCCAAGGGCAAACAACCTGCAAGGGGTGGGAAGCTTCCG
AAGGAGTGAGTCCGTGTGACCTTTTTGTTTTGACTCGTTGTGCGCAGGCC
GTCGCACATTGTAACCCTAGCTAGGTGTGACTGTAAACTGGGTTTTTTTT
GTCGGATAGAGGACAGATAAAACTGCACATTTGTGGAGTTGTTTTTTCTG
TTGTGGATAGACACAATGACATTGTTGTGTTATTTCGTTCTTGTGGATAG
ATACTAAAACACCGTTCTTTTTTTGTTTATTGTAGTGGATAGAGAAAATC
ACATCGTTCTTGTACTGCTTTTGTTTAGAAGATGGGCAAAATAACACCGT
TCAGTTTTTTTATCATTTGTGAAACAGTAGATAAAATCACCCCGTTTATA
CACTGTTTACTTTGTTGGAGTGGATAGCAAAATCACACCGTGCTTGTATT
TATTTACTTTTTTGTGGCGGATGGAACAAACCGCATGTTTTTTTTTGTTA
TTGTGAGATCACACTGTGCTTGTGCACATTTTGTTTTTGGTATTGTGTTT
TCACACTGTGCTTGTATTGTTTTTAGGGTCAGGAAAGGACAAATCACACT
TTTGTTTTCATTTTGTAGCGCGTAGATAAAATCCCATCGTTGTAACATCG
ACGTTTTTGTACTATTTTTTTAAAGTGCAAACATCACGTGTCCATGAAAC
CATACCTATCTTGTAGGTACTCGGAGTACATAGTTTCTTTACTTCATAGA
CGTAATCACCCTTCTGTTCTTCTACTTTTTTGTTTCAACGTCGGCTGCGA
CAGATGGTAAGCGGAGAAGGAGTAAGAGAGCGGAGTCAGCAGCGGCGCCA
ATCGTTAAGGTTAACAGCGATACACCAAACGCCACTGGCAAGCCAGAAAC
ACCGCCGTCATCGCTTGCTGCCACGCCAACAACGTCGACGGCGCCCAATG
GTAGGAAGAGGAAGAGGAAGGGAGCGGACCCAGCAGCGGCACCAATCATT
GAGGCAGACAGCGGCACAACGACGGCCACTGACCTCGAAAATACGTTTGC
AGGGTTTGCCCCTTCCGCGGCACCAGCGGCTGCGTCCGAGAGCGGGAGGT
CCAGGAGCGGCAGGGTGATAGTAAAACCGCGGAGAGCCACAGAGTTCAAG
GGAGTTGCATCCATCAAAGACAGCGACGGGTGAGCAGTTGGCTGCGGGCG
GTCGAAGACGCGCGCGGGGTGGGGGTGCGGGAGTGGGCCCGTCGTTGGCG
TGCTTGCTGTCGAAGGGTGAATTCGGGGCGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig113:516297..518777-

>mRNA_P-littoralis_Contig113.119.1 ID=mRNA_P-littoralis_Contig113.119.1|Name=mRNA_P-littoralis_Contig113.119.1|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig113:516297..518777- (Pylaiella littoralis U1_48)
ATGCTCGTAATGCTGGTGCGGTGTCGCTGGCGTAGGGGTGGAAGGCTCGG
GGGAAGCAGCAGCCAGGGGGTGGGAAGCTTCCGAAGGAATGGTAAGCGGA
GAAGGAGTAAGAGAGCGGAGTCAGCAGCGGCGCCAATCGTTAAGGTTAAC
AGCGATACACCAAACGCCACTGGCAAGCCAGAAACACCGCCGTCATCGCT
TGCTGCCACGCCAACAACGTCGACGGCGCCCAATGGTAGGAAGAGGAAGA
GGAAGGGAGCGGACCCAGCAGCGGCACCAATCATTGAGGCAGACAGCGGC
ACAACGACGGCCACTGACCTCGAAAATACGTTTGCAGGGTTTGCCCCTTC
CGCGGCACCAGCGGCTGCGTCCGAGAGCGGGAGGTCCAGGAGCGGCAGGG
TGATAGTAAAACCGCGGAGAGCCACAGAGTTCAAGGGAGTTGCATCCATC
AAAGACAGCGACGGGTGA
back to top