mRNA_P-littoralis_Contig113.96.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.96.1
Unique NamemRNA_P-littoralis_Contig113.96.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig113.96.1 vs. uniprot
Match: D7FI73_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI73_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 4.570e-6
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 HRDCTKLPSYGVAGTKTAEFCSGHAKDRMVNVINKRC 114
            H +CTK P+YGVAG+K  EFCS HA+D MVNV NKRC
Sbjct:    6 HANCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 42
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BLAST of mRNA_P-littoralis_Contig113.96.1 vs. uniprot
Match: A0A6H5JT00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT00_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.160e-6
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 HRDCTKLPSYGVAGTKTAEFCSGHAKDRMVNVINKRC 114
            H +CTK P+YGVAG+K  EFCS HA+D MVNV NKRC
Sbjct:   66 HENCTKRPTYGVAGSKKREFCSQHARDGMVNVNNKRC 102
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.96.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI73_ECTSI4.570e-670.27EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JT00_9PHAE5.160e-670.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:395597..399458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LD34
Model size3223
Max annot lvl2880.D8LD34|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.15e-05
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size1638
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789457.0796497-UTR-P-littoralis_Contig113:395596..3956831680789457.0796497-UTR-P-littoralis_Contig113:395596..395683Pylaiella littoralis U1_48UTRP-littoralis_Contig113 395597..395683 +
1680789457.1160405-UTR-P-littoralis_Contig113:397960..3994581680789457.1160405-UTR-P-littoralis_Contig113:397960..399458Pylaiella littoralis U1_48UTRP-littoralis_Contig113 397961..399458 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789457.0908592-CDS-P-littoralis_Contig113:395683..3972891680789457.0908592-CDS-P-littoralis_Contig113:395683..397289Pylaiella littoralis U1_48CDSP-littoralis_Contig113 395684..397289 +
1680789457.1058452-CDS-P-littoralis_Contig113:397928..3979601680789457.1058452-CDS-P-littoralis_Contig113:397928..397960Pylaiella littoralis U1_48CDSP-littoralis_Contig113 397929..397960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.96.1prot_P-littoralis_Contig113.96.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 395684..397960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.96.1

>prot_P-littoralis_Contig113.96.1 ID=prot_P-littoralis_Contig113.96.1|Name=mRNA_P-littoralis_Contig113.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=546bp
MVNVINKRCTHHGCTKWPSYGVAGTKTTELCSGHAKDGMVNVINKRCTHR
CCTKLPSYGVAGTKTAEFCSDHAKDGMVNVISKRCKHHGCAKLPSYGVGG
TKTAEFCSGHAKDGMVEVKNKKCTHRGCAKQASSSAAGAKKVEFCSVHAK
DGMVDVKHKRCNRHGCTKLPSYGVAGTKMREFCSEHAKDGMVNVISKRCI
HRGCTKLPSYGVAGTKMREFCSEHAKDGMVNVISKRCIHRGCTKLPSYGA
GGTKTPEFCSGHAKDGMVNVISKRCKHRGCAKRPSYGAGGTKTPEFCSGH
AKDGMVDVKNKRCTHRGCTKQASSSAAGAKKVEFCSVHAKDGIVDVVDKR
CAQPGCTTSPGFGVTGGIRTFCARHAGEGMADLSSPKNLAGAHSGHSGGV
RGHGEVAVEEDTSQRAGAGGKRRDRPPSSIQMGTFTCRSKRTRQVPVHTH
VTPTPLEAAGNGAHTPVGCGSFLETVKAAVKVEVAAPSKSDPARSSPCEA
EAWVDSAENDSCGEPDGAMKTEVGMSFPPKGAAAVGELNSRRGKR*
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mRNA from alignment at P-littoralis_Contig113:395597..399458+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.96.1 ID=mRNA_P-littoralis_Contig113.96.1|Name=mRNA_P-littoralis_Contig113.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3862bp|location=Sequence derived from alignment at P-littoralis_Contig113:395597..399458+ (Pylaiella littoralis U1_48)
ACCCACCGTGACTGCACCAAGCTGCCGAGTTATGGTGTGGCGGGTACCAA
GACGGCGGAGTTCTGCTCTGGACACGCCAAGGACCGGATGGTGAACGTCA
TCAACAAGAGGTGCACCCACCATGGCTGCACCAAGTGGCCGAGCTATGGT
GTGGCGGGTACCAAGACGACGGAGCTCTGCTCTGGACACGCCAAGGACGG
GATGGTGAACGTCATCAACAAGAGGTGCACCCACCGTTGCTGCACCAAGC
TGCCGAGCTATGGTGTGGCGGGTACCAAGACGGCGGAGTTTTGCTCTGAT
CACGCCAAGGATGGGATGGTAAACGTCATCAGCAAGAGGTGCAAACACCA
TGGCTGCGCCAAGCTGCCGAGCTATGGTGTCGGAGGAACAAAGACGGCGG
AGTTCTGCTCTGGACACGCCAAGGACGGGATGGTGGAGGTCAAAAACAAG
AAGTGCACCCATCGCGGCTGCGCCAAGCAAGCGAGCTCAAGTGCTGCGGG
TGCCAAAAAGGTGGAGTTCTGCTCTGTACATGCCAAGGACGGGATGGTGG
ACGTCAAACACAAGAGGTGCAACCGTCATGGCTGCACCAAGCTGCCGAGC
TATGGTGTGGCGGGTACCAAAATGAGAGAGTTCTGCTCTGAGCACGCCAA
GGATGGGATGGTAAACGTCATCAGCAAGAGGTGCATCCACCGTGGCTGCA
CCAAGCTGCCGAGCTATGGTGTGGCGGGTACCAAAATGAGAGAATTCTGC
TCTGAACACGCCAAGGATGGGATGGTAAACGTCATCAGCAAGAGGTGCAT
CCACCGTGGCTGCACCAAGCTGCCGAGCTATGGTGCTGGAGGAACTAAGA
CGCCGGAGTTCTGCTCTGGACACGCCAAGGATGGGATGGTAAACGTCATC
AGCAAGAGGTGCAAACACCGTGGCTGCGCCAAGCGGCCGAGCTATGGTGC
TGGAGGAACTAAGACGCCGGAGTTCTGCTCTGGACACGCCAAGGACGGGA
TGGTGGACGTCAAAAACAAGAGGTGCACCCATCGCGGCTGCACCAAGCAA
GCGAGCTCAAGTGCTGCGGGTGCCAAAAAGGTGGAGTTCTGCTCTGTACA
TGCCAAGGACGGAATTGTGGACGTCGTCGACAAGAGGTGTGCCCAACCAG
GTTGCACCACCTCTCCTGGCTTCGGTGTGACCGGCGGCATCCGAACGTTC
TGCGCGCGACATGCTGGAGAAGGCATGGCGGACCTCTCCTCACCTAAGAA
TCTAGCTGGTGCCCACAGTGGACACAGTGGCGGTGTACGAGGGCATGGCG
AAGTAGCAGTGGAAGAGGACACCTCACAACGTGCTGGTGCCGGTGGAAAG
AGGAGGGACCGCCCTCCTTCATCTATCCAGATGGGGACATTTACGTGCAG
GAGCAAGCGAACCCGCCAGGTGCCCGTCCACACACATGTGACTCCGACTC
CACTCGAAGCAGCAGGGAACGGAGCCCACACTCCAGTCGGATGTGGTTCG
TTTTTGGAGACAGTGAAAGCTGCGGTGAAGGTAGAGGTGGCGGCCCCATC
GAAGTCAGACCCCGCGCGATCTTCCCCATGTGAAGCAGAAGCATGGGTCG
ACTCGGCGGAGAATGATTCGTGTGGTGAGCCAGACGGTGCGATGAAGACG
GAAGTGGGTATGTCATTCCCGCCGAAAGGGGCGGCAGCTGTGGGTGAGTC
GAAAACAGTCGCTCTTGATGCAGTATCCGAGCCTCGCATGTCGGATTGTC
TCATTGTTAAGGTCTCGACTCGCCGCTTAATTTGTTGTCTTCGTCGTGTT
GGGGAGAGTGGAAAACGGGCAGGTCGTTATTTTCTTTGTGGATGTTTTGC
GTGAAGCACCGGTGGGTTTCATATCTGTTCGAGCAGAACGGGTGCCTATT
GCATCGCACCCCTGCAGTGAGGGGAGGCGTTGAAATATCGACGTGCACGT
TTTACCTTCAATAAGTCCCCGTGTCCCCGTGGGTGTTGAGTCGAAACTGT
ATCATATGCGTGGACGGTTTTGCGGCGTAGTGCTCATTGTTTCGCTGATC
TCCCACAGCGTCGGTTTGGTTGGCAATACTGCTTGGTGTTTTGTTCCCCT
CATGAGATGATCAATTATGTAACCGGTGTCTTTACTGCTCAAGTAAAGTC
TACAGCGGTACGCGTGGACACTATAGGCGTCATGGTAGAAAGAGCCGCAT
ACACATTAGTGATGAACTTGGGAGCGATGTATCAATGGTATTTCCACGGC
CGTGGTAGACCCGGCCGCCCCCGTCCTCATTTCAACCTCCCGAAAACTCT
TGTTGATCTTCCAATGCTTTACTTCGAAACAGGAGAGCTAAATTCAAGAA
GGGGCAAGAGGTGACGAGGATTACCCGGAGGTAGCATGGTTGTACCCTAG
GGACTGACGAACACACTGCTGCTGCGGTCGATCTTTGGCGGTCGGCTCTT
CTGACTGGTATTAGTGCGAGCAGGCTTCCATGTCATCGTTTTGGTGTACT
GATTCAGAGGGCGTCAACCTGCGACATCCAGGGGTTGACCAGGCATGTCG
TTGAACACAGAGAACACGAATACAGCGATCGGGTAGGGGGGCCCCACTTT
TTTGCGTCGATCAAATTCAGCAGCTTCACTACTTCCGCTGCTGTGTGCAT
GTACAGCGAACTGGGCAACTACCAGTCCTTTTTTCCGCTGTAGACGAAAC
TTTCGGGGCAGAGGCAGGCAGACGAGGCAGCAAAGCATGATATTTTTATA
CACTGGTAAAAGGCTGGCGTCGTACTGTGCTCCGTTATGATATTATGACT
ACTTCAATTATGTCCTCTATCTTTTCGTTTCCCGTATCTCGCCTATGTTT
TTGTTGGTTTGTTTTTCTGGCATGACCTTTTGTGGTATCAGGTATGATCT
TGTGGGATTGATTTTCATCGTTGGTTCAAAAGTTTCGGTGTTATGCAGGA
TCCCCTCCCCCGCCCCTCACGAGCTTTCTTTATGAAACTCGATATATCCT
CAGAGCAGGAAAGATATCAGCGCCACAAAAAGGTCGGCGTTGGGGAAATC
TATTTGAGGGCTGCCCGGAAAGTTACTGTTGTTTTGGTTTTGGTCCCCTG
TCGCTTAGGGTTTACTGTGGTTGGAAGCTGTCTTCAAAGGTCGATGGCGG
CGTGTTTGTTAGCATCTCTGTGGGGTACCTAGGCGTATCGGTAAATGAAC
TTTTGGTACTCAACACGCTCTCCCGGCCCCAAAACATCGACACCTTTGCT
AGATAAAAAGTTGCCGGGATGGCACGATAGCGGGTGTGTCCGTCGCGCTT
GACCTCAAGAAGCATGCGCTGCTGTTCGAGTCCGTGTGTAAAGGGATTGT
CAACCGGCACGCATGCTCCACGAGTGAATGTGGTGGACGCGCCTCGTCAT
CAAGTTTATGCGGCGGAGTTTTGTTGACGAGACCAACATCTTATTGGACA
TGCAGTAGGACTTCGAGCTTGCTAGGTCGTCGCCGTGATGTAGGCATGCG
TGCGTCTGAGGGGAGCAAGCGTGTACAGGCAGAGCTCGTGGCGAGACATG
TTTGTGACTAATTGCATACACTTGTCTTTTTCGCTTTTTCATTTTTCCTC
TCGTAGAGACTCTGCGCAATGCTAGAGTCCTTGCTGAGCTATGTTCTCTG
ATTTGACTTGGTTCTGTGCTCTGGTTTGTTGTTGTGGTTCATCTTGGTTT
TGTTTGTTTAAAAAAAAACAATTTCGAGTCTGAATTTCTGTAATTTTGTA
ATTTTGTCTTTTGGCCACCAAAGAATGTGCACTACGTCTGACTTATTGCG
GAGGTCCATCGTTTATCCCCCTTTAATTGTTCTCCTCGCAGCACGATGTG
TGTCTGGTTTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig113:395597..399458+

>mRNA_P-littoralis_Contig113.96.1 ID=mRNA_P-littoralis_Contig113.96.1|Name=mRNA_P-littoralis_Contig113.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1638bp|location=Sequence derived from alignment at P-littoralis_Contig113:395597..399458+ (Pylaiella littoralis U1_48)
ATGGTGAACGTCATCAACAAGAGGTGCACCCACCATGGCTGCACCAAGTG
GCCGAGCTATGGTGTGGCGGGTACCAAGACGACGGAGCTCTGCTCTGGAC
ACGCCAAGGACGGGATGGTGAACGTCATCAACAAGAGGTGCACCCACCGT
TGCTGCACCAAGCTGCCGAGCTATGGTGTGGCGGGTACCAAGACGGCGGA
GTTTTGCTCTGATCACGCCAAGGATGGGATGGTAAACGTCATCAGCAAGA
GGTGCAAACACCATGGCTGCGCCAAGCTGCCGAGCTATGGTGTCGGAGGA
ACAAAGACGGCGGAGTTCTGCTCTGGACACGCCAAGGACGGGATGGTGGA
GGTCAAAAACAAGAAGTGCACCCATCGCGGCTGCGCCAAGCAAGCGAGCT
CAAGTGCTGCGGGTGCCAAAAAGGTGGAGTTCTGCTCTGTACATGCCAAG
GACGGGATGGTGGACGTCAAACACAAGAGGTGCAACCGTCATGGCTGCAC
CAAGCTGCCGAGCTATGGTGTGGCGGGTACCAAAATGAGAGAGTTCTGCT
CTGAGCACGCCAAGGATGGGATGGTAAACGTCATCAGCAAGAGGTGCATC
CACCGTGGCTGCACCAAGCTGCCGAGCTATGGTGTGGCGGGTACCAAAAT
GAGAGAATTCTGCTCTGAACACGCCAAGGATGGGATGGTAAACGTCATCA
GCAAGAGGTGCATCCACCGTGGCTGCACCAAGCTGCCGAGCTATGGTGCT
GGAGGAACTAAGACGCCGGAGTTCTGCTCTGGACACGCCAAGGATGGGAT
GGTAAACGTCATCAGCAAGAGGTGCAAACACCGTGGCTGCGCCAAGCGGC
CGAGCTATGGTGCTGGAGGAACTAAGACGCCGGAGTTCTGCTCTGGACAC
GCCAAGGACGGGATGGTGGACGTCAAAAACAAGAGGTGCACCCATCGCGG
CTGCACCAAGCAAGCGAGCTCAAGTGCTGCGGGTGCCAAAAAGGTGGAGT
TCTGCTCTGTACATGCCAAGGACGGAATTGTGGACGTCGTCGACAAGAGG
TGTGCCCAACCAGGTTGCACCACCTCTCCTGGCTTCGGTGTGACCGGCGG
CATCCGAACGTTCTGCGCGCGACATGCTGGAGAAGGCATGGCGGACCTCT
CCTCACCTAAGAATCTAGCTGGTGCCCACAGTGGACACAGTGGCGGTGTA
CGAGGGCATGGCGAAGTAGCAGTGGAAGAGGACACCTCACAACGTGCTGG
TGCCGGTGGAAAGAGGAGGGACCGCCCTCCTTCATCTATCCAGATGGGGA
CATTTACGTGCAGGAGCAAGCGAACCCGCCAGGTGCCCGTCCACACACAT
GTGACTCCGACTCCACTCGAAGCAGCAGGGAACGGAGCCCACACTCCAGT
CGGATGTGGTTCGTTTTTGGAGACAGTGAAAGCTGCGGTGAAGGTAGAGG
TGGCGGCCCCATCGAAGTCAGACCCCGCGCGATCTTCCCCATGTGAAGCA
GAAGCATGGGTCGACTCGGCGGAGAATGATTCGTGTGGTGAGCCAGACGG
TGCGATGAAGACGGAAGTGGGTATGTCATTCCCGCCGAAAGGGGCGGCAG
CTGTGGGAGAGCTAAATTCAAGAAGGGGCAAGAGGTGA
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