mRNA_P-littoralis_Contig113.95.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.95.1
Unique NamemRNA_P-littoralis_Contig113.95.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:393945..395063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size490
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789457.0108824-UTR-P-littoralis_Contig113:393944..3939571680789457.0108824-UTR-P-littoralis_Contig113:393944..393957Pylaiella littoralis U1_48UTRP-littoralis_Contig113 393945..393957 -
1680789457.0474832-UTR-P-littoralis_Contig113:394874..3950631680789457.0474832-UTR-P-littoralis_Contig113:394874..395063Pylaiella littoralis U1_48UTRP-littoralis_Contig113 394875..395063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789457.0261967-CDS-P-littoralis_Contig113:393957..3941471680789457.0261967-CDS-P-littoralis_Contig113:393957..394147Pylaiella littoralis U1_48CDSP-littoralis_Contig113 393958..394147 -
1680789457.0383785-CDS-P-littoralis_Contig113:394776..3948741680789457.0383785-CDS-P-littoralis_Contig113:394776..394874Pylaiella littoralis U1_48CDSP-littoralis_Contig113 394777..394874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.95.1prot_P-littoralis_Contig113.95.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 393958..394874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.95.1

>prot_P-littoralis_Contig113.95.1 ID=prot_P-littoralis_Contig113.95.1|Name=mRNA_P-littoralis_Contig113.95.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=96bp
MWGEVEEAAQPLESAPQHRQQDQRQRVVCDWKKTRVGISSKAKGSSQQSS
AAAAAAALAPTRHNSNECRCLFPPSGEYSLETCPHEVKAPDCYGE*
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mRNA from alignment at P-littoralis_Contig113:393945..395063-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.95.1 ID=mRNA_P-littoralis_Contig113.95.1|Name=mRNA_P-littoralis_Contig113.95.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1119bp|location=Sequence derived from alignment at P-littoralis_Contig113:393945..395063- (Pylaiella littoralis U1_48)
GCAAGAGATCAGAGAGCTTTGCAGACTTTTTGGTCTTGTGCCTGCTTCGC
GAACTTCACGGCCGATTATACATCGACCATGCTCGAGAAACAAGCAGTCA
GCAGCCCAGTGGACGAGTCTGGTTGATGCACCTCTGTCGAAGTGAGCAGC
AGTCCTCAACATTACGGCGGTGTCAATCGGCCTAGTCTCATGTGGGGTGA
AGTCGAGGAGGCAGCGCAACCTTTGGAGTCGGCGCCGCAACACCGGCAGC
AAGACCAGCGGCAGCGCGTGGTATGTGATTGGAAAAAGTGAGTTGGAGGC
TGGTTGCGGGGGGCGGTGTTGTGTTTCGCTTGTGATCGCTGTGGACAAGG
TTATAGCGAGCGTTGTGTCGATCGTAAACGAGTGGATCAAGCTCAAGGGT
TTTGGCCTCAGCACAGATCGAGAAGTGAGCGGTAAGCTGGACCGGCATGG
TTCTCCGAGCTGGTGCCATCCCGCCCGAGTTGTCGCAACAGACACTGGTG
TGTCTCTCTGTTTAGCGTTGACTGTGTTGCAGCTTTTGAGGAAAGCAGGC
ACCGCTCCACGGTGTCACATGTCGGCCTGCAGCTGACACAACCACCCTCA
ATCCCTCGCGTGACCTCAGGGAGCCTCCCTTTACTACCTCCACGAGAGGC
AGTATGCGATCGCCTCGATTATCGCCGGGGGATCAACGAGAGGGAAACCG
GCTCTGCAGCTACTGCGTTCAGCCTAGCTGCAACTGGTCAGCGCTATGGC
CTCTAGGAGAAGAGGGTCGCCGAAAATGCCAGAAGCTTTCTGAGCGTGCG
TTGTCCTCCTGGATTTGGCAACAGCGGCCTTGGGGCACAGCTATGACCCC
CACGGCCACCACCACTGACGTGCTCTTCCCCCTTGCTTCGTATCGCGGTG
ACGGGCTCGATCGCAGGACCAGAGTCGGCATTAGCAGCAAAGCCAAGGGT
TCAAGTCAGCAATCCTCAGCAGCAGCAGCAGCAGCAGCACTGGCGCCAAC
CCGGCACAACAGCAACGAGTGTCGATGCCTCTTTCCGCCTAGCGGGGAGT
ATTCTCTTGAGACGTGCCCTCACGAAGTCAAAGCACCGGACTGCTACGGG
GAGTGAGGATGGGGGCGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig113:393945..395063-

>mRNA_P-littoralis_Contig113.95.1 ID=mRNA_P-littoralis_Contig113.95.1|Name=mRNA_P-littoralis_Contig113.95.1|organism=Pylaiella littoralis U1_48|type=CDS|length=288bp|location=Sequence derived from alignment at P-littoralis_Contig113:393945..395063- (Pylaiella littoralis U1_48)
ATGTGGGGTGAAGTCGAGGAGGCAGCGCAACCTTTGGAGTCGGCGCCGCA
ACACCGGCAGCAAGACCAGCGGCAGCGCGTGGTATGTGATTGGAAAAAGA
CCAGAGTCGGCATTAGCAGCAAAGCCAAGGGTTCAAGTCAGCAATCCTCA
GCAGCAGCAGCAGCAGCAGCACTGGCGCCAACCCGGCACAACAGCAACGA
GTGTCGATGCCTCTTTCCGCCTAGCGGGGAGTATTCTCTTGAGACGTGCC
CTCACGAAGTCAAAGCACCGGACTGCTACGGGGAGTGA
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