mRNA_P-littoralis_Contig113.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.62.1
Unique NamemRNA_P-littoralis_Contig113.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:242425..243220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size589
Hectar predicted targeting categoryother localisation
Exons2
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.8825438-UTR-P-littoralis_Contig113:242424..2425881680789456.8825438-UTR-P-littoralis_Contig113:242424..242588Pylaiella littoralis U1_48UTRP-littoralis_Contig113 242425..242588 +
1680789456.9199317-UTR-P-littoralis_Contig113:243209..2432201680789456.9199317-UTR-P-littoralis_Contig113:243209..243220Pylaiella littoralis U1_48UTRP-littoralis_Contig113 243210..243220 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.8921092-CDS-P-littoralis_Contig113:242588..2425971680789456.8921092-CDS-P-littoralis_Contig113:242588..242597Pylaiella littoralis U1_48CDSP-littoralis_Contig113 242589..242597 +
1680789456.9018877-CDS-P-littoralis_Contig113:242804..2432091680789456.9018877-CDS-P-littoralis_Contig113:242804..243209Pylaiella littoralis U1_48CDSP-littoralis_Contig113 242805..243209 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.62.1prot_P-littoralis_Contig113.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 242589..243209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.62.1

>prot_P-littoralis_Contig113.62.1 ID=prot_P-littoralis_Contig113.62.1|Name=mRNA_P-littoralis_Contig113.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
MIQAKTPAGAPGNPSASATAQRTRAQNNAYVVRCRVLRSVFPLAGVAVGV
YVMTTVSTKRGGRWGALSSTAPCTATFLFASCKMIATVLRDLFEAKNVVA
EGIAATLLQRKMRDGEIKTGWHHVIRRRNRRTIPIKS*
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mRNA from alignment at P-littoralis_Contig113:242425..243220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.62.1 ID=mRNA_P-littoralis_Contig113.62.1|Name=mRNA_P-littoralis_Contig113.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=796bp|location=Sequence derived from alignment at P-littoralis_Contig113:242425..243220+ (Pylaiella littoralis U1_48)
GGATAAACAAGGCCTTGGCAGATCATCGCAGCGCCGTGGGGGCACCGGGG
TATGCTCTCGATGCCGCAGCGACCGGGGTGCCGGGAGTCGGGGCTAGCGC
GGGCGGAGGCGTCTGGAGTAGTTGCTCTGAGTCTGCACGAGAGAAGGACG
GCGTTTCTCCGGGGATGATTCAGGTACCTCTCCCCTCTCCTTGTCGAGGC
GTTTTCCTTAGTTTTAACTTGTTGGTGGTGTTCTGCATGCAACTGGAGGA
CCCCATCAGTATCCGATCCCCCGTCATGGAGTTATCTACACTGCGGAGAC
GTAGTTAGTACACGGAGATAGACAACAATATATTACCACGCCGTCCACTC
CTGTTCCGTTCTTTGCACTTTCCGCGTCAGGCAAAAACGCCCGCAGGCGC
TCCGGGAAACCCTTCAGCTAGCGCGACCGCTCAACGGACCAGGGCACAGA
ACAATGCATACGTTGTCCGGTGCAGGGTACTTCGTAGCGTTTTCCCGTTG
GCGGGGGTTGCAGTGGGGGTGTATGTGATGACTACAGTTTCAACAAAACG
TGGTGGGAGGTGGGGGGCTTTGTCATCGACGGCCCCGTGTACCGCAACGT
TTTTGTTTGCATCATGCAAGATGATCGCAACGGTCCTTCGCGACCTGTTC
GAGGCGAAGAATGTAGTTGCAGAGGGTATAGCCGCAACACTTCTACAGAG
AAAAATGCGCGACGGGGAAATCAAAACGGGTTGGCACCATGTTATTCGCC
GAAGAAATCGGAGAACCATACCCATAAAGTCATAATTTTAGTACCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig113:242425..243220+

>mRNA_P-littoralis_Contig113.62.1 ID=mRNA_P-littoralis_Contig113.62.1|Name=mRNA_P-littoralis_Contig113.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig113:242425..243220+ (Pylaiella littoralis U1_48)
ATGATTCAGGCAAAAACGCCCGCAGGCGCTCCGGGAAACCCTTCAGCTAG
CGCGACCGCTCAACGGACCAGGGCACAGAACAATGCATACGTTGTCCGGT
GCAGGGTACTTCGTAGCGTTTTCCCGTTGGCGGGGGTTGCAGTGGGGGTG
TATGTGATGACTACAGTTTCAACAAAACGTGGTGGGAGGTGGGGGGCTTT
GTCATCGACGGCCCCGTGTACCGCAACGTTTTTGTTTGCATCATGCAAGA
TGATCGCAACGGTCCTTCGCGACCTGTTCGAGGCGAAGAATGTAGTTGCA
GAGGGTATAGCCGCAACACTTCTACAGAGAAAAATGCGCGACGGGGAAAT
CAAAACGGGTTGGCACCATGTTATTCGCCGAAGAAATCGGAGAACCATAC
CCATAAAGTCATAA
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