mRNA_P-littoralis_Contig113.51.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.51.1
Unique NamemRNA_P-littoralis_Contig113.51.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:205661..206437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size632
Hectar predicted targeting categoryother localisation
Exons2
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.81516-UTR-P-littoralis_Contig113:205660..2057851680789456.81516-UTR-P-littoralis_Contig113:205660..205785Pylaiella littoralis U1_48UTRP-littoralis_Contig113 205661..205785 -
1680789456.8496666-UTR-P-littoralis_Contig113:206257..2064371680789456.8496666-UTR-P-littoralis_Contig113:206257..206437Pylaiella littoralis U1_48UTRP-littoralis_Contig113 206258..206437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.8295653-CDS-P-littoralis_Contig113:205785..2058781680789456.8295653-CDS-P-littoralis_Contig113:205785..205878Pylaiella littoralis U1_48CDSP-littoralis_Contig113 205786..205878 -
1680789456.8417673-CDS-P-littoralis_Contig113:206023..2062571680789456.8417673-CDS-P-littoralis_Contig113:206023..206257Pylaiella littoralis U1_48CDSP-littoralis_Contig113 206024..206257 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.51.1prot_P-littoralis_Contig113.51.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 205786..206257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.51.1

>prot_P-littoralis_Contig113.51.1 ID=prot_P-littoralis_Contig113.51.1|Name=mRNA_P-littoralis_Contig113.51.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=109bp
MARRSCSPCPRVHCICHMSPRWARAHRLTALSVQNDILLKYDVCGGTGHF
LGLSSGSVMESGVAKMPWRYVTPPRGLDPKRIPERAPVYWVSQGTPIYSR
SCRHLPPT*
back to top

mRNA from alignment at P-littoralis_Contig113:205661..206437-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.51.1 ID=mRNA_P-littoralis_Contig113.51.1|Name=mRNA_P-littoralis_Contig113.51.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=777bp|location=Sequence derived from alignment at P-littoralis_Contig113:205661..206437- (Pylaiella littoralis U1_48)
ATCAGCACGTCTATCTGCCTGCACCAACGTACGCTTCAAAGGAGCTTCGC
TGGGCACACTCTCCGAGTTGGAACCGTTGACGAGGTACGTGTGTGTATGC
TTCGGAAAGAAGACAGATAGACCGCCAGAGAGACGCTGGTTGGTTGGTGA
TTTGCCCCGCATGTCGTGCTGTGAATTTGAATGGCTCGTCGTAGTTGTTC
CCCATGCCCACGCGTGCACTGTATATGTCACATGTCGCCGCGTTGGGCGA
GAGCGCATCGGTTGACGGCGCTGTCTGTTCAGAATGATATCTTGCTCAAA
TATGACGTGTGTGGTGGCACTGGTCATTTTCTGGGTTTATCCTCTGGTAG
TGTCATGGAGAGTGGTGTGGCGAAGATGCCGTGGCGGTATGTAACACCAC
CTAGAGGTTTGGACGTACAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAAACGCAGTGCAGGGAATGCCGCGAAGGTCGTACACGACACGGAGAT
TGAACAGCAGCTAACCACGTGCGATAGGTTCATGTCAAAGGGATGCTGGT
ACTGTACAGCCAAAGCGGATACCGGAACGTGCCCCAGTATACTGGGTGAG
TCAAGGTACACCAATTTATTCAAGGTCCTGTCGCCATCTGCCCCCGACAT
AATATGAGAGAGGGCGAGAGCTGCACCTGCGCCTCAGAGAGCTTGGCCAG
CTGGAACTCGAACTTATTCATTCCTGCAATAGCTCATGCATTCTGAAATC
AAGCCCCGTGGTCTCAACCACCCTGAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig113:205661..206437-

>mRNA_P-littoralis_Contig113.51.1 ID=mRNA_P-littoralis_Contig113.51.1|Name=mRNA_P-littoralis_Contig113.51.1|organism=Pylaiella littoralis U1_48|type=CDS|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig113:205661..206437- (Pylaiella littoralis U1_48)
ATGGCTCGTCGTAGTTGTTCCCCATGCCCACGCGTGCACTGTATATGTCA
CATGTCGCCGCGTTGGGCGAGAGCGCATCGGTTGACGGCGCTGTCTGTTC
AGAATGATATCTTGCTCAAATATGACGTGTGTGGTGGCACTGGTCATTTT
CTGGGTTTATCCTCTGGTAGTGTCATGGAGAGTGGTGTGGCGAAGATGCC
GTGGCGGTATGTAACACCACCTAGAGGTTTGGACCCAAAGCGGATACCGG
AACGTGCCCCAGTATACTGGGTGAGTCAAGGTACACCAATTTATTCAAGG
TCCTGTCGCCATCTGCCCCCGACATAA
back to top