mRNA_P-littoralis_Contig113.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.47.1
Unique NamemRNA_P-littoralis_Contig113.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:192630..193248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size586
Hectar predicted targeting categoryother localisation
Exons2
Cds size363
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.7559187-CDS-P-littoralis_Contig113:192629..1928721680789456.7559187-CDS-P-littoralis_Contig113:192629..192872Pylaiella littoralis U1_48CDSP-littoralis_Contig113 192630..192872 -
1680789456.7730691-CDS-P-littoralis_Contig113:192906..1930261680789456.7730691-CDS-P-littoralis_Contig113:192906..193026Pylaiella littoralis U1_48CDSP-littoralis_Contig113 192907..193026 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.7876523-UTR-P-littoralis_Contig113:193026..1932481680789456.7876523-UTR-P-littoralis_Contig113:193026..193248Pylaiella littoralis U1_48UTRP-littoralis_Contig113 193027..193248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.47.1prot_P-littoralis_Contig113.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 192630..193026 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.47.1

>prot_P-littoralis_Contig113.47.1 ID=prot_P-littoralis_Contig113.47.1|Name=mRNA_P-littoralis_Contig113.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=121bp
MQLYLQGVQNLTKKYVFLRSVLGRKLNFGTVPNEHLEVVGVESVLSFRDS
LHMRRTVASSKRARPQISHFGVILDFCRHPNTAVLTDTSGGVGFWLPAAA
AVRAWDATHIPHQYSRLGRFE
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mRNA from alignment at P-littoralis_Contig113:192630..193248-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.47.1 ID=mRNA_P-littoralis_Contig113.47.1|Name=mRNA_P-littoralis_Contig113.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=619bp|location=Sequence derived from alignment at P-littoralis_Contig113:192630..193248- (Pylaiella littoralis U1_48)
CAGATGTCTGCTTGTGGTCACGAGCCCGGGTTCAGATCCCGCCTTACACC
ATTCCTTTCTCACGCAATGGTGAGGACCAAAAAATCAACGTTTGCGGAAC
TTACGGTGAACTTTTTGAGGTAGCCAAATGCTGTGTGTAGTATAAAATGA
AGAGGGGTTGTACAGTAGGGAGTGGCGTATTGTAACGAGTTGTAACATAG
TGTCAGGGATTTGCATAAATAAATGCAGCTTTATTTGCAGGGGGTTCAAA
ATCTTACCAAGAAATACGTATTTTTAAGAAGTGTTCTGGGCCGTAAATTA
AACTTTGGAACTGTGCCCAATGAACATCTAGAGGTCGTTGGTCTTGGAGG
TTGCCCGGTAGGCCAGCTAAATTCGCGTCGAATCCGTTTTGTCATTCAGG
GATAGTCTACACATGCGGAGAACGGTGGCATCAAGCAAACGCGCCCGCCC
GCAGATCTCCCATTTTGGTGTAATTTTGGACTTCTGCAGGCACCCAAATA
CAGCAGTCCTCACGGATACCTCCGGAGGGGTTGGTTTCTGGCTGCCTGCT
GCTGCTGCTGTCAGGGCATGGGACGCTACTCACATACCACATCAGTACAG
TAGACTGGGGCGATTTGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig113:192630..193248-

>mRNA_P-littoralis_Contig113.47.1 ID=mRNA_P-littoralis_Contig113.47.1|Name=mRNA_P-littoralis_Contig113.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig113:192630..193248- (Pylaiella littoralis U1_48)
ATGCAGCTTTATTTGCAGGGGGTTCAAAATCTTACCAAGAAATACGTATT
TTTAAGAAGTGTTCTGGGCCGTAAATTAAACTTTGGAACTGTGCCCAATG
AACATCTAGAGGTCGTTGGTGTCGAATCCGTTTTGTCATTCAGGGATAGT
CTACACATGCGGAGAACGGTGGCATCAAGCAAACGCGCCCGCCCGCAGAT
CTCCCATTTTGGTGTAATTTTGGACTTCTGCAGGCACCCAAATACAGCAG
TCCTCACGGATACCTCCGGAGGGGTTGGTTTCTGGCTGCCTGCTGCTGCT
GCTGTCAGGGCATGGGACGCTACTCACATACCACATCAGTACAGTAGACT
GGGGCGATTTGAA
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