mRNA_P-littoralis_Contig113.46.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.46.1
Unique NamemRNA_P-littoralis_Contig113.46.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:188513..189276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size348
Hectar predicted targeting categoryother localisation
Exons2
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.6942766-CDS-P-littoralis_Contig113:188512..1886871680789456.6942766-CDS-P-littoralis_Contig113:188512..188687Pylaiella littoralis U1_48CDSP-littoralis_Contig113 188513..188687 +
1680789456.7162187-CDS-P-littoralis_Contig113:189105..1892751680789456.7162187-CDS-P-littoralis_Contig113:189105..189275Pylaiella littoralis U1_48CDSP-littoralis_Contig113 189106..189275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.46.1prot_P-littoralis_Contig113.46.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 188513..189275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.46.1

>prot_P-littoralis_Contig113.46.1 ID=prot_P-littoralis_Contig113.46.1|Name=mRNA_P-littoralis_Contig113.46.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
LVIAQDKFGASVVFTVIEPNQGLWYQHNVRSERQAGLSVVIGAGSIVHVM
WQLRESGNATKSGVHANYRKQQRQQQQQQGQQQQQQQQQRVRMPFLPRTT
RRTLLRRTLVKPKLR
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mRNA from alignment at P-littoralis_Contig113:188513..189276+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.46.1 ID=mRNA_P-littoralis_Contig113.46.1|Name=mRNA_P-littoralis_Contig113.46.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=764bp|location=Sequence derived from alignment at P-littoralis_Contig113:188513..189276+ (Pylaiella littoralis U1_48)
CTTGTGATCGCTCAGGACAAGTTCGGAGCGAGCGTCGTGTTTACCGTAAT
CGAGCCCAACCAGGGGTTGTGGTACCAGCACAACGTGAGAAGTGAGCGGC
AAGCTGGACTGTCTGTGGTGATCGGAGCTGGCTCCATCGTACATGTAATG
TGGCAACTCCGGGAGTCCGGTAATGGTGAGGCTTGCTACATACGTAGCCA
TGCGCGTGTGTTTGGTGCTGATGTTGTTGCTGTTCTAGAGCAAAATCGCC
GCCACGGCCACGGTGACACAAACACCCTTTAATGAATCCCTCGCGTGGCC
TCACAGTCCTGCCCCTACTGCCTCTGAGAAGGCCGAATGCTTATACCTTA
CTCATATCATAGGTCGGACACGAAGGGAAACCGGCTCTAAAGTATGGTGA
TTGCGTTCACGGGCTGTGGCTGTTTAGCTCCATGGCTGAGAGAAGAGGAG
GGTCGCTGAAAATGCCGAGCTCTGCCGAGCTCTGCCGAGCTCTGGCGTGG
GTAGTCTTCCTCGTGTAAGCGACGGCAACCTTCGGGCGCAGCAATGACCA
CCACCGTATCGCCCTGCTCTCTTGGTTCGTATCGCCGTATCAGCAACAAA
ATCGGGGGTTCACGCGAATTATCGTAAACAGCAGCGGCAGCAACAGCAGC
AACAAGGGCAGCAGCAACAACAGCAACAGCAGCAACGGGTGCGGATGCCT
TTCCTTCCCCGTACAACACGACGCACTCTCTTGAGACGTACCCTCGTGAA
GCCAAAGCTCCGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig113:188513..189276+

>mRNA_P-littoralis_Contig113.46.1 ID=mRNA_P-littoralis_Contig113.46.1|Name=mRNA_P-littoralis_Contig113.46.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig113:188513..189276+ (Pylaiella littoralis U1_48)
CTTGTGATCGCTCAGGACAAGTTCGGAGCGAGCGTCGTGTTTACCGTAAT
CGAGCCCAACCAGGGGTTGTGGTACCAGCACAACGTGAGAAGTGAGCGGC
AAGCTGGACTGTCTGTGGTGATCGGAGCTGGCTCCATCGTACATGTAATG
TGGCAACTCCGGGAGTCCGGTAATGCAACAAAATCGGGGGTTCACGCGAA
TTATCGTAAACAGCAGCGGCAGCAACAGCAGCAACAAGGGCAGCAGCAAC
AACAGCAACAGCAGCAACGGGTGCGGATGCCTTTCCTTCCCCGTACAACA
CGACGCACTCTCTTGAGACGTACCCTCGTGAAGCCAAAGCTCCGG
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