mRNA_P-littoralis_Contig113.32.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig113.32.1
Unique NamemRNA_P-littoralis_Contig113.32.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig113.32.1 vs. uniprot
Match: A0A6H5KWP8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.540e-6
Identity = 38/93 (40.86%), Postives = 44/93 (47.31%), Query Frame = 1 
Query:    1 EVYTTSIFGAGGATGQEGSEQAAPLLVWWGTGDMPAAPNSGSPPPQPPRPFAPRAGVGRSPPQPRHQPPHSGQGQ-----HGMSMPFPGSPAS 264
            EVY TS+FG+ G   +     A PL+V WGTGD+PA      P P PPR      G   SPPQ   Q P  G G       G   PFP  P +
Sbjct:   53 EVYATSVFGSVGGAAEVDGGNANPLVVGWGTGDLPAPAEGELPSPNPPRSLVSPGGGPSSPPQRFQQSPSPGSGGGGRRGQGTLQPFPRGPVT 145
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig113.32.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWP8_9PHAE2.540e-640.86Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig113contigP-littoralis_Contig113:137569..138751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size719
Hectar predicted targeting categoryother localisation
Exons2
Cds size717
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789456.5781984-CDS-P-littoralis_Contig113:137568..1376501680789456.5781984-CDS-P-littoralis_Contig113:137568..137650Pylaiella littoralis U1_48CDSP-littoralis_Contig113 137569..137650 +
1680789456.587376-CDS-P-littoralis_Contig113:138115..1387501680789456.587376-CDS-P-littoralis_Contig113:138115..138750Pylaiella littoralis U1_48CDSP-littoralis_Contig113 138116..138750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig113.32.1prot_P-littoralis_Contig113.32.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig113 137569..138750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig113.32.1

>prot_P-littoralis_Contig113.32.1 ID=prot_P-littoralis_Contig113.32.1|Name=mRNA_P-littoralis_Contig113.32.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=239bp
EVYTTSIFGAGGATGQEGSEQAAPLLVWWGTGDMPAAPNSGSPPPQPPRP
FAPRAGVGRSPPQPRHQPPHSGQGQHGMSMPFPGSPASLSAAPPSHHPSS
RFSQQQQQQQLGRRQAPRGPYLPHPRPPPPPPQMQQQQQHGQPMKHYLPG
DPRGGHPPPPPPQLFVPPPHPGDAAAHQRQQQQAGFHGMAGRGHAGQGGG
GGGRGGPQMGGTNSFQQPPTFSHYGPGAQQPSPAAASSS
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mRNA from alignment at P-littoralis_Contig113:137569..138751+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig113.32.1 ID=mRNA_P-littoralis_Contig113.32.1|Name=mRNA_P-littoralis_Contig113.32.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1183bp|location=Sequence derived from alignment at P-littoralis_Contig113:137569..138751+ (Pylaiella littoralis U1_48)
GAAGTCTACACCACGAGCATCTTCGGGGCCGGAGGGGCGACGGGCCAGGA
AGGGAGTGAACAAGCGGCCCCGCTGTTGGTTTGTGAGATGTCTCTATGTC
GGCATATGTTTTTATGTCTCTTAATTGTTTTGCGTTGTAGTTCTTCCTAG
GCCGTGCCTGAACGTCCTGGCGCTCTTTTGAAGAGTACAACAACGGATTT
GCTGCAGCTGCTCTACCTATGTGTACACGACACCCAAACCCAGCCCGACG
ACCATGCGCCCGCTGAGCCCCCCCGCTCGCTGCGCACACATTAAAATATA
TCACTACCAGCTAACATATTACGGTTTGTTTTGCACCGCCGCTGTTCTGT
CCCCGTTCGTCATGAGACGGGTCCGCCCGTCCGGTACCGAGCGACTATTT
CACCGTCCCAGCCCTTCCCTGTCTTCTGTCATACCATGTCATGGAACAGT
TTGCCGCTATATATATTTTTTGCCTTGTCGTATTATTACAATCCGAGCGC
GTCTGCGTGCGTCGCCCTTGCCGTGTCCCGCTGTTTTTCGCCTCAAGGGT
GGGGAACGGGAGACATGCCAGCTGCACCCAACAGCGGCTCCCCTCCTCCT
CAACCCCCGCGCCCGTTCGCGCCTCGAGCAGGCGTCGGCCGCTCCCCGCC
CCAGCCTCGACACCAACCGCCGCACTCGGGGCAAGGGCAACATGGAATGT
CGATGCCTTTCCCAGGAAGTCCCGCAAGTCTCTCCGCCGCGCCGCCGTCA
CACCACCCGTCATCACGCTTCTCGCAGCAGCAGCAGCAGCAGCAGCTCGG
ACGAAGGCAAGCCCCACGTGGACCGTACCTTCCTCACCCGCGGCCGCCCC
CGCCGCCGCCGCAGATGCAGCAGCAGCAGCAGCATGGGCAACCGATGAAA
CATTACCTTCCGGGGGATCCTAGGGGCGGGCATCCTCCCCCTCCACCCCC
CCAACTTTTCGTGCCGCCCCCACACCCCGGCGACGCTGCGGCACATCAGC
GGCAACAACAGCAGGCTGGTTTCCATGGGATGGCGGGAAGAGGCCATGCT
GGCCAAGGGGGAGGAGGGGGCGGACGGGGGGGCCCACAGATGGGGGGCAC
CAACTCCTTTCAACAGCCGCCGACATTTTCTCATTATGGCCCGGGTGCGC
AGCAGCCGAGTCCGGCGGCGGCGAGCTCGAGTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig113:137569..138751+

>mRNA_P-littoralis_Contig113.32.1 ID=mRNA_P-littoralis_Contig113.32.1|Name=mRNA_P-littoralis_Contig113.32.1|organism=Pylaiella littoralis U1_48|type=CDS|length=717bp|location=Sequence derived from alignment at P-littoralis_Contig113:137569..138751+ (Pylaiella littoralis U1_48)
GAAGTCTACACCACGAGCATCTTCGGGGCCGGAGGGGCGACGGGCCAGGA
AGGGAGTGAACAAGCGGCCCCGCTGTTGGTTTGGTGGGGAACGGGAGACA
TGCCAGCTGCACCCAACAGCGGCTCCCCTCCTCCTCAACCCCCGCGCCCG
TTCGCGCCTCGAGCAGGCGTCGGCCGCTCCCCGCCCCAGCCTCGACACCA
ACCGCCGCACTCGGGGCAAGGGCAACATGGAATGTCGATGCCTTTCCCAG
GAAGTCCCGCAAGTCTCTCCGCCGCGCCGCCGTCACACCACCCGTCATCA
CGCTTCTCGCAGCAGCAGCAGCAGCAGCAGCTCGGACGAAGGCAAGCCCC
ACGTGGACCGTACCTTCCTCACCCGCGGCCGCCCCCGCCGCCGCCGCAGA
TGCAGCAGCAGCAGCAGCATGGGCAACCGATGAAACATTACCTTCCGGGG
GATCCTAGGGGCGGGCATCCTCCCCCTCCACCCCCCCAACTTTTCGTGCC
GCCCCCACACCCCGGCGACGCTGCGGCACATCAGCGGCAACAACAGCAGG
CTGGTTTCCATGGGATGGCGGGAAGAGGCCATGCTGGCCAAGGGGGAGGA
GGGGGCGGACGGGGGGGCCCACAGATGGGGGGCACCAACTCCTTTCAACA
GCCGCCGACATTTTCTCATTATGGCCCGGGTGCGCAGCAGCCGAGTCCGG
CGGCGGCGAGCTCGAGT
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