mRNA_P-littoralis_Contig1.437.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.437.1
Unique NamemRNA_P-littoralis_Contig1.437.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1.437.1 vs. uniprot
Match: D8LBP6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP6_ECTSI)

HSP 1 Score: 264 bits (675), Expect = 1.050e-74
Identity = 153/231 (66.23%), Postives = 182/231 (78.79%), Query Frame = 1 
Query:  532 HSLGEALKPLLSFLCVVLRSMAPSPREAQMMARLLVAALLGMFIGTERRTSHRPAGVRTMSLVALGACTFTLVSQFGFVGKADQARVAASVASGVGFIGAGVITTSGKEAS-VRDSFSFRXXXXXXXXXXXXXXNAYNDLDGEVRGLTTAGAIWITAGLGMACGAGLFFVATFGAVLTLGILKISEVICTVGTLWARVRSILRPELAQRLEEEAKARKEMAEHTEKSGATP 1221
            HS+ E+++ +L +  V+L+S+APSP E Q+  RL+VAA++GMFIGTERRTSHRPAGVRTMSLVALGACTFTLVSQ GFVGKADQARVAASVASGVGFIGAGVITTSGKEAS +R+S + R               + ND+DGEV+GLTTA AIWITAGLGMACGAGL F+A  GA LT+GILKISEV  +V   WARVRS+LRP+LAQ+L +EA        +TE +G+TP
Sbjct:    3 HSVLESVRLVLGYGWVLLQSLAPSPFELQIFLRLVVAAMVGMFIGTERRTSHRPAGVRTMSLVALGACTFTLVSQLGFVGKADQARVAASVASGVGFIGAGVITTSGKEASSMRESLNTRGRGGSNFPGTTV---SMNDVDGEVKGLTTASAIWITAGLGMACGAGLLFIAMLGAGLTVGILKISEVTTSVQKKWARVRSVLRPKLAQKLADEA--------NTEITGSTP 222
[Close]
BLAST of mRNA_P-littoralis_Contig1.437.1 vs. uniprot
Match: A0A835YXE4_9STRA (MgtC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE4_9STRA)

HSP 1 Score: 127 bits (318), Expect = 4.860e-31
Identity = 76/139 (54.68%), Postives = 92/139 (66.19%), Query Frame = 1 
Query:  670 ERRTSHRPAGVRTMSLVALGACTFTLVSQFGFVGKADQARVAASVASGVGFIGAGVITTSGKEASVRDSFSFRXXXXXXXXXXXXXXNAYNDLDGEVRGLTTAGAIWITAGLGMACGAGLFFVATFGAVLTLGILKISE 1086
            ERR SHRPAGVRTMSLVALGA TFT+VS +GF    D  R+AA+VASGVGF+GAG IT    +  ++ S                     +D+D +VRGLTTA AIWITAGLGMA GAG+FF A  G V+T+ +LK+S 
Sbjct:    2 ERRHSHRPAGVRTMSLVALGAATFTIVSAYGF-SSGDPGRIAANVASGVGFLGAGTITHP--KRYIKGS---------------------SDIDSDVRGLTTAAAIWITAGLGMAAGAGMFFTAIAGTVITITVLKMSN 116
[Close]
BLAST of mRNA_P-littoralis_Contig1.437.1 vs. uniprot
Match: A0A7S1CXC0_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXC0_CYCTE)

HSP 1 Score: 120 bits (301), Expect = 2.320e-28
Identity = 71/160 (44.38%), Postives = 99/160 (61.88%), Query Frame = 1 
Query:  610 EAQMMARLLVAALLGMFIGTERRTSHRPAGVRTMSLVALGACTFTLVSQFGFVGKADQARVAASVASGVGFIGAGVITTSGKEASVRDSFSFRXXXXXXXXXXXXXXNAYNDLDGEVRGLTTAGAIWITAGLGMACGAGLFFVATFGAVLTLGILKISEV 1089
            +  +++RL+VAA+ G  +G ER +++  AGVRTMSLV+LGA TFT+ S +GFVG+ D +R+A+SVASGVGFIGAGVITTS K +                                V GLTTA AIW++A +G+A GAGL  +A   A +T+ IL++  +
Sbjct:   34 QLALVSRLVVAAIAGAVVGWERASTNHSAGVRTMSLVSLGAATFTICSMYGFVGRWDTSRMASSVASGVGFIGAGVITTSNKYSK-----------------------------NVVHGLTTAAAIWLSAAVGVASGAGLHIIAVCAASITVSILRLGRI 164
[Close]
BLAST of mRNA_P-littoralis_Contig1.437.1 vs. uniprot
Match: A0A835YH54_9STRA (MgtC/SapB/SrpB transporter n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH54_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.400e-28
Identity = 67/140 (47.86%), Postives = 89/140 (63.57%), Query Frame = 1 
Query:  670 ERRTSHRPAGVRTMSLVALGACTFTLVSQFGFVGKADQARVAASVASGVGFIGAGVITTSGKEASVRDSFSFRXXXXXXXXXXXXXXNAYNDLDGEVRGLTTAGAIWITAGLGMACGAGLFFVATFGAVLTLGILKISEV 1089
            +RR+S RPAG+RTM+LV+LGA TFTLVS +GF G  D  RVAA+VASGVGF+GAG IT   K                            +++D +VRGLTTA AIWI AGLGM+ GAG++F A  G  +T+ +L++ ++
Sbjct:    2 QRRSSQRPAGIRTMALVSLGAATFTLVSAYGFSGG-DPGRVAANVASGVGFLGAGTITHPKKRVQ-----------------------GSSEVDADVRGLTTAAAIWIAAGLGMSAGAGMYFTAVCGTAITMVVLRLGDI 117
[Close]
BLAST of mRNA_P-littoralis_Contig1.437.1 vs. uniprot
Match: A0A1E7FEZ8_9STRA (MgtC/SapB transporter (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEZ8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.530e-26
Identity = 73/160 (45.62%), Postives = 97/160 (60.62%), Query Frame = 1 
Query:  610 EAQMMARLLVAALLGMFIGTERRTSHRPAGVRTMSLVALGACTFTLVSQFGF--VGKADQARVAASVASGVGFIGAGVITTS--GKEASVRDSFSFRXXXXXXXXXXXXXXNAYNDLDGEVRGLTTAGAIWITAGLGMACGAGLFFVATFGAVLTLGILK 1077
            E ++M RLL AALLG  +G +R  S   AGVRTMSLV++GAC FT+ S +GF    + D +R+A++VASGVGFIGAGVITTS   K+   R                    N  N++   V GLTTA  IW++A +G++CG GL  +AT  A  T+ IL+
Sbjct:   22 EIRLMIRLLYAALLGTCLGKQRSVSRHSAGVRTMSLVSMGACCFTICSCYGFSNFARVDVSRMASNVASGVGFIGAGVITTSVINKDGQSRS-------------------NPQNNI---VHGLTTAATIWLSAAVGVSCGVGLLRIATTAAFATICILR 159
[Close]
BLAST of mRNA_P-littoralis_Contig1.437.1 vs. uniprot
Match: A0A7S2MLU6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MLU6_9STRA)

HSP 1 Score: 118 bits (295), Expect = 7.510e-26
Identity = 74/167 (44.31%), Postives = 96/167 (57.49%), Query Frame = 1 
Query:  610 EAQMMARLLVAALLGMFIGTERRTSHRPAGVRTMSLVALGACTFTLVSQFGFVG--------KADQARVAASVASGVGFIGAGVITTSGKEASVRDSFSFRXXXXXXXXXXXXXXNAYNDLDGEVRGLTTAGAIWITAGLGMACGAGLFFVATFGAVLTLGILKISE 1086
            E ++  RL+ A++ G  +G ER TS  PAGVRTM+LV+LGAC FTL S FGF+         K D +R+A++VASGVGFIGAGVIT + K + V D  S                         V GLTTA AIW+ A +G+A G GL+ VA   A  T+ IL+ S+
Sbjct:   39 EVELCWRLIFASIGGALVGLERSTSDHPAGVRTMALVSLGACAFTLCSMFGFLAVAASSSAAKLDPSRMASNVASGVGFIGAGVITNNRKSSGVYDRQS------------------------SVNGLTTAAAIWVAAAVGVASGVGLYVVAATAAASTIAILRFSK 181
[Close]
BLAST of mRNA_P-littoralis_Contig1.437.1 vs. uniprot
Match: A0A3D3WSL7_9CHLR (Magnesium transporter MgtC n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A3D3WSL7_9CHLR)

HSP 1 Score: 107 bits (268), Expect = 1.880e-24
Identity = 69/155 (44.52%), Postives = 88/155 (56.77%), Query Frame = 1 
Query:  610 EAQMMARLLVAALLGMFIGTERRTSHRPAGVRTMSLVALGACTFTLVSQFGFVGKADQARVAASVASGVGFIGAGVITTSGKEASVRDSFSFRXXXXXXXXXXXXXXNAYNDLDGEVRGLTTAGAIWITAGLGMACGAGLFFVATFGAVLTLGIL 1074
            E ++  RLL+A L G  IG ERR++ +PAG+RT+SLVA+GA  FT+VS FGF   ADQ+RVAA + +GVGF+GAG I  SG   S                                 GLTTA  IW TA +GMA G+G++  +T G VL L IL
Sbjct:    9 EIEIAVRLLLATLFGAAIGYERRSAEKPAGLRTLSLVAVGAALFTVVSAFGF-DTADQSRVAAQIVTGVGFLGAGTILRSGVTIS---------------------------------GLTTAATIWATAAIGMAVGSGMYIASTAGTVLVLVIL 129
[Close]
BLAST of mRNA_P-littoralis_Contig1.437.1 vs. uniprot
Match: A0A7S2LIN7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LIN7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 6.420e-24
Identity = 69/152 (45.39%), Postives = 92/152 (60.53%), Query Frame = 1 
Query:  631 LLVAALLGMFIGTERRTSHRPAGVRTMSLVALGACTFTLVSQFGFVGKA---DQARVAASVASGVGFIGAGVITTSGKEASVRDSFSFRXXXXXXXXXXXXXXNAYNDLDGEVRGLTTAGAIWITAGLGMACGAGLFFVATFGAVLTLGILK 1077
            LL+A  LG  IG ERR S RPAG+RTMSLV+LG+  FT+ S FGFV      D +RV+A++ SGVGF+GAG+I    K + V  +   R                       V+G+TTAGAIW++A +G+ACG GL+FVA+F   L L +L+
Sbjct:   38 LLMAVFLGALIGYERRESDRPAGIRTMSLVSLGSALFTINSTFGFVSGPMGWDASRVSAAIPSGVGFLGAGLIV---KTSEVDPTTGERHHL--------------------VQGITTAGAIWMSAAVGLACGGGLYFVASFAVALNLVLLR 166
[Close]
BLAST of mRNA_P-littoralis_Contig1.437.1 vs. uniprot
Match: A0A1M5B6P1_9FIRM (Putative Mg2+ transporter-C (MgtC) family protein n=8 Tax=Desulfofundulus TaxID=2282741 RepID=A0A1M5B6P1_9FIRM)

HSP 1 Score: 106 bits (265), Expect = 6.650e-24
Identity = 68/170 (40.00%), Postives = 92/170 (54.12%), Query Frame = 1 
Query:  607 REAQMMARLLVAALLGMFIGTERRTSHRPAGVRTMSLVALGACTFTLVSQFGFVG--------KADQARVAASVASGVGFIGAGVITTSGKEASVRDSFSFRXXXXXXXXXXXXXXNAYNDLDGEVRGLTTAGAIWITAGLGMACGAGLFFVATFGAVLTLGILKISEVI 1092
            R  +M+ARLL+A L+G FIG ER  SH+PAG+RT +LV LG+  FTL+S +GF            D AR+AA + +GVGFIG G+I                                + D D  +RGLTTA +IW+TAGLG   GAGL+  +   AVL    LK++ ++
Sbjct:    3 RMQEMIARLLLAFLVGFFIGLEREISHKPAGIRTHTLVCLGSALFTLISSYGFTSLIGANPYQPGDPARIAAQIVTGVGFIGGGII--------------------------------FKDRD-HIRGLTTAASIWLTAGLGTGIGAGLYVPSLVAAVLGYLTLKLNHLL 139
[Close]
BLAST of mRNA_P-littoralis_Contig1.437.1 vs. uniprot
Match: A0A7S3L8G4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8G4_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.370e-23
Identity = 66/162 (40.74%), Postives = 96/162 (59.26%), Query Frame = 1 
Query:  601 SPREAQMMARLLVAALLGMFIGTERRTSHRPAGVRTMSLVALGACTFTLVSQFGFVGKA---DQARVAASVASGVGFIGAGVITTSGKEASVRDSFSFRXXXXXXXXXXXXXXNAYNDLDGEVRGLTTAGAIWITAGLGMACGAGLFFVATFGAVLTLGILK 1077
            +P E     +L++A +LG FIG ERR + RPAG+RTM+LV+LG+C FT+ S F F+      D +R++A++ SGVGF+GAG+I     +   +D  S                    D+   V GLTTA AIW++A +G+ACG  L+F ATFG  + L +L+
Sbjct:   86 TPDECSFSRKLVIAVVLGGFIGWERRQADRPAGIRTMALVSLGSCLFTINSAFAFLDGPMGWDASRISAAIPSGVGFLGAGLIF----KQQEKDEES-------------------GDVQHVVHGLTTAAAIWLSAAVGVACGGSLYFAATFGTAVMLVLLR 224
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBP6_ECTSI1.050e-7466.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YXE4_9STRA4.860e-3154.68MgtC family-domain-containing protein n=1 Tax=Trib... [more]
A0A7S1CXC0_CYCTE2.320e-2844.38Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A835YH54_9STRA5.400e-2847.86MgtC/SapB/SrpB transporter n=1 Tax=Tribonema minus... [more]
A0A1E7FEZ8_9STRA4.530e-2645.63MgtC/SapB transporter (Fragment) n=1 Tax=Fragilari... [more]
A0A7S2MLU6_9STRA7.510e-2644.31Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A3D3WSL7_9CHLR1.880e-2444.52Magnesium transporter MgtC n=3 Tax=Chloroflexi Tax... [more]
A0A7S2LIN7_9STRA6.420e-2445.39Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1M5B6P1_9FIRM6.650e-2440.00Putative Mg2+ transporter-C (MgtC) family protein ... [more]
A0A7S3L8G4_9STRA1.370e-2340.74Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1881854..1886472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBP6
PFAMsMgtC
Model size1277
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.72e-75
EggNOG OGsCOG1285@1|root,2S8UQ@2759|Eukaryota
DescriptionMgtC family
Cds size1275
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789325.1954348-CDS-P-littoralis_Contig1:1881854..18820191680789325.1954348-CDS-P-littoralis_Contig1:1881854..1882019Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1881855..1882019 -
1680789325.2100062-CDS-P-littoralis_Contig1:1882845..18831211680789325.2100062-CDS-P-littoralis_Contig1:1882845..1883121Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1882846..1883121 -
1680789325.2219021-CDS-P-littoralis_Contig1:1884081..18842051680789325.2219021-CDS-P-littoralis_Contig1:1884081..1884205Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1884082..1884205 -
1680789325.2313168-CDS-P-littoralis_Contig1:1885762..18864721680789325.2313168-CDS-P-littoralis_Contig1:1885762..1886472Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1885763..1886472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.437.1prot_P-littoralis_Contig1.437.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1881855..1886472 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.437.1

>prot_P-littoralis_Contig1.437.1 ID=prot_P-littoralis_Contig1.437.1|Name=mRNA_P-littoralis_Contig1.437.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=425bp
AGISQSSCRIPQWCYRVQKSRRPRADLRARFIPMVFSTTRGRSGHRELLP
MLLFSIGGGLFNDRLLVSAFQLPMAHRWRAGADTAGRPNASPVAAPAVGL
CSGPRGSHPSSAAWPSAADRPPFFNSISAGMRSGSLPRSEHCSALSGSKL
ANAIFRGSSSSSIGNVSYSSQGAIGAMHSLGEALKPLLSFLCVVLRSMAP
SPREAQMMARLLVAALLGMFIGTERRTSHRPAGVRTMSLVALGACTFTLV
SQFGFVGKADQARVAASVASGVGFIGAGVITTSGKEASVRDSFSFRSRGS
GSGSGSGSGSNAYNDLDGEVRGLTTAGAIWITAGLGMACGAGLFFVATFG
AVLTLGILKISEVICTVGTLWARVRSILRPELAQRLEEEAKARKEMAEHT
EKSGATPAVRSGEAREREEKEKKEE
back to top

mRNA from alignment at P-littoralis_Contig1:1881854..1886472-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.437.1 ID=mRNA_P-littoralis_Contig1.437.1|Name=mRNA_P-littoralis_Contig1.437.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4619bp|location=Sequence derived from alignment at P-littoralis_Contig1:1881854..1886472- (Pylaiella littoralis U1_48)
GCTGGCATCAGTCAGAGCTCCTGTCGAATACCTCAATGGTGCTATCGGGT
ACAGAAATCAAGGAGGCCTCGAGCGGATTTGCGAGCAAGGTTCATACCTA
TGGTATTTTCCACGACGAGAGGACGCAGTGGGCACCGGGAGCTTCTCCCC
ATGTTGTTGTTCTCCATTGGGGGCGGGCTGTTCAACGACCGGCTTCTTGT
GTCTGCGTTTCAACTTCCCATGGCGCACCGGTGGAGAGCTGGTGCTGATA
CCGCTGGAAGACCAAACGCATCACCGGTAGCAGCACCAGCAGTAGGCTTG
TGTTCGGGCCCCCGCGGTAGTCATCCCAGCAGTGCTGCTTGGCCTTCTGC
AGCAGACCGACCGCCGTTCTTCAACTCCATCTCTGCAGGTATGCGTAGCG
GCTCTCTGCCCCGCTCCGAGCACTGCTCCGCTCTCTCCGGGAGCAAGCTC
GCCAACGCCATCTTCCGCGGCAGCAGCAGCAGCAGCATCGGCAACGTGAG
CTATAGCAGCCAAGGAGCAATCGGCGCAATGCACAGCCTGGGGGAGGCGC
TCAAGCCGTTGCTGAGTTTTCTGTGTGTTGTGCTGAGATCTATGGCGCCG
TCTCCTCGCGAGGCGCAGATGATGGCCCGGCTCCTGGTGGCGGCGTTGTT
GGGTATGTTCATCGGCACGGAGCGAAGGACGAGCCACAGACCGGCGGGTG
TGCGCACTATGTAAGAGAAAGAGAGAGCGAGAGAAGCAGAGAGAGAGAGC
ATAGGGAAGCGCGGAATGCTGTCGATGTACAGTATTGAATTATTGTTTGA
GCCAAGAAAAAAATGTTCCTCTCTTTTGTACAAAAGGAGGACGTTAATTG
TGGCTGTTGCGTTCTGCGTTCAAGACAAAAGCCGTTTTGTTATTTGATGT
CGCGGTACTGCAGTTAGCGATTCGTGATCCAGGCAGTACCCGTCTGCTGA
ACCCCACAAACGAAACCTCGTACATATGCATAAATGATGCTCTATCATTC
ATATCATACAGGTATGCTATACCTCCGTGTACTCAGCGGGAGCGTTGTTG
CCGACATTTCGAGGTCCGCAGTGACCTATCAAGATCGTATGATATGGTAT
TGATATCATATGATGTGATACCGGTACAGTACAGCAGTACAAGTAGGCAC
ATGGAGGTACATGCCTGAAAAACACGGACGACGGGGGACACTCATTAAGG
TTAGCCCCCCTCGTCACACCCCCACACATATCACACGCTCGCGGGCGTAT
GCCGGTGGGATGCAACCTATTTCTTCAAGGTAATAACGTACGCTTTGTTC
CAAGTCCCACACACACGCACATCAAATCACGTTCGCGGGTTGCCGGCGAG
ACGTCGTTCACTTTCTTGAATCCATTTCCTTCACCAGAGAGAGCATTGGT
TGCTTCTCCAACTCCTCTGTACCTACCGGCAACTTTTCCCCCTGGCACCT
GATTTGCAAAGCCCTACCCTAGGCACCGTTACGGGCTTCGCTATGCACTG
TGTTACACACGGGCGGTCGGTAATCGTATACTGCCTGGTATATAATGCGA
CAAAGGTTTCTCGCAAAGACAAGCGAATACGTGGATGTGTTTGCAGGAAA
ACAAAGGGCGATCCGTAAGGCGTTCATGACCCGGCAAACGAAGGGGTTGG
GCGCTTTCCTTTCCGCGACGCTCTCAACCCGTGTATATCAATCTGAGCCG
TCTCACTATTCCCTCCAAGTATGTATTACAACACTGCTGTGGTGTTGACC
TCCTGAATTTTGTGAAGCGTCCTGTTGTCGTCATCGTTGTCGTTTTGTTT
GCTGTTGTCTTGAAATTCTTTGCGGCACGCAACTGTTCAAACTCTCGAGC
TGGAGCCCGACCAGTCACACGCGACTTCCGGTAAATTTATTTGCCTCTTG
CGAGGCGACCGTCTCTCGACCGGGGTACCGGTACCGTACGATACGTGCAG
ACGACCACGGACCAGACCGCGAGTTTCATGCTCGTTGACTCATCATCAAA
CGTTCGTTGTATCAAATGTACAGTAGTACGTATACCGGTGTATCTTCATT
TGATACGAGCTGTATTCCAATCGTGTAGTTGCCCGACCCTACCGTAGTCG
GCCTCTTTTGGTGTGGCCGCCCCGGTACTCCCGTCGGCGCTACGAGTGCA
CGCAAACATACATACTTTGCCCGCTCCCTACAAGGCGTGTTCTTTTTTTT
TCTCTAGACTTTTATTTTTCGTTGACCGGTCGTTTGTTGTGCGGGTGGCA
ACTCTTGGGCTTGGCAGGTCTCTCGTGGCGCTCGGGGCCTGCACCTTCAC
GCTGGTGTCACAGTTCGGATTCGTCGGGAAGGCCGACCAGGCGCGTGTGG
CGGCCAGCGTGGCCTCGGGCGTCGGTTTCATCGGAGCCGGGGTGAGAGAG
CGCAAACGACGAGCTTTGGTTTGGGATATTTTGTGTTGATTTATGGGTTG
CGTTGGTGTGTGTTTGTGTTTGTTTATGTGCGTGTCGTCGTCGTCGTATT
TTCATCTTGAGCTGCAGCAAAGATAGACAGCACTGCTAGCCGGCTTTCTC
GGCAGATGGCATCCTGCCATGGGGGGCAGGCTCAGCGAAGAATGAATCTA
GTGCTCAGTGTCCGGATTCAGAGTGTAGAAGAATATCGCAAATTCAGTTT
ACGACGCATGCCACCAGCGATGTGTGCTTTGTGTGTGCAGTCGGCGGAAG
ACCTGATATCCACACCTGCCGATAGCCATTTTTTCCATGCTTATTTTCAA
TCGTTTGTTTCGTTTTTTTATTACCTATTTATTTCAGTTTTGCTTTGAAG
AATGTGTATTGCTCCTACAACAGAAGCGGTACAGTAAGAGCAATACTTTT
GTTTTCCTCTCTAGTTTTGACAATTCCGGTGCAGGTCTCTGAAAGTGATT
TGTAGCATGGCCGACAGCAGTCGTCGGCGGGCCGCACTGCTCATAGCCAA
CGAGGTGGGACCCAACCCAGTGGGAGTCCTAGTACTTTCCTCCGGGACGC
GGTGTATCCACTTGAAGTAGAGACAGTTCAGAGCACTACGATGCCGCGTC
CGGAGGGGGTGATGCACTTTCTTCCTCTGAGCTTTGCGCGAGGGTCGCTG
CGGCATAATTAACCTTTTTCGAAGTATATTATTTTCTACTTCGTATAACC
CAAGTCATTGATCAATCAAAATCAAGCCCACGCGCGTTCAATTCATTCAG
CCTTTTTTTGTTGTTTTTCTCGACCTTCCTGATGACAAACGATTTCTCCC
TCTCTCCATCATATCAGCACGTATATAGCGCATATCATAAACCAATCACA
ACACACTGTAAACGAACGCACGACGACCCCACATGACGCGAACAAAAACA
GGTGATAACCACGTCCGGAAAGGAAGCCAGCGTCCGAGACAGCTTCAGCT
TTCGCAGCAGAGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGCAAC
GCGTACAATGACCTTGACGGTGAGGTGAGGGGCCTCACCACGGCCGGCGC
CATCTGGATCACGGCGGGGCTGGGGATGGCTTGCGGGGCCGGGCTTTTCT
TCGTGGCCACCTTTGGGGCTGTGCTAACGCTAGGCATCCTGAAAATCTCC
GAAGTGATCTGCACAGTGGGGACCCTGGTACGTGCGAGTTATTTTGTAAT
TTTGCATCTCCCTATTTTTTGGCGGGGGCCAGGAGTGGGAATGAAGCACC
GCTTTTTCCGCTTTTTGTGTTGAACTCTTCTTTCCCCTCTGCAAAACTGC
GGCAAAACTCGTATGTGCTGCCGCCACCGCGGCTTTAATTCCTCAGGACC
CCGAGTCCTTGCTAGTTGTTAGGAACGGACGTGTTCCAACCGAGAGCCAG
AAGCTCGTTTTATATTTGGCCATTGTGTAGAGCCACGCTCCGTTGAGTGT
GGTGTATATATCAGCCACTCTTCAAAGTGTAGTTGCCAACCTGAGATTCC
AACATGAGTACATGATGACATGATATCTCTTTCCTGAAGACGTCAGTATG
TCAGCTTCAAAGGCGTTCGTGGATGCGCGCACGCACGTGTTGTGTGGCGC
TTTAGCAGGTGGAGGTGTAGAGTATCGGCAAAATTCTCACCTTTGCCGGT
GGTCAGGATCCCGCATTTTTGTTTCTGTGTCACGAGGCTCGATTGATTAA
GGCACACTTGGGGCAACCAGAGCGATGGCGTACTGTAACTTTGCTGCCAC
CCACGGTAAGCCGAGTCCCCTTCGTGCAGCTCTTCTTTCGTGATGGGCGT
CTTGCCGTTTCGCCGTTGTGCATGACCCTCAAAGGGACCTGTTCCCTTTA
GGGTCCTACCGGAATCCTTTCGGTCCCGCTCGCTCGTTACCTTTGACCGA
CACCATTCAGTAACGCACGGGTGAACGTTTTTGTAACCCTCCCACCCCCC
CTTCGTTCGTTCCACTCGCCTGTGGTATTTTAACCCTCTCCGGCCCCCCG
TAGTGGGCTAGGGTGCGTTCGATTCTGAGGCCGGAGTTGGCTCAAAGACT
CGAAGAGGAAGCGAAAGCTCGAAAGGAAATGGCAGAACACACAGAGAAGA
GCGGCGCGACTCCTGCTGTGCGTAGCGGCGAAGCTCGCGAGAGAGAGGAA
AAGGAGAAGAAGGAGGAGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1:1881854..1886472-

>mRNA_P-littoralis_Contig1.437.1 ID=mRNA_P-littoralis_Contig1.437.1|Name=mRNA_P-littoralis_Contig1.437.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1275bp|location=Sequence derived from alignment at P-littoralis_Contig1:1881854..1886472- (Pylaiella littoralis U1_48)
GCTGGCATCAGTCAGAGCTCCTGTCGAATACCTCAATGGTGCTATCGGGT
ACAGAAATCAAGGAGGCCTCGAGCGGATTTGCGAGCAAGGTTCATACCTA
TGGTATTTTCCACGACGAGAGGACGCAGTGGGCACCGGGAGCTTCTCCCC
ATGTTGTTGTTCTCCATTGGGGGCGGGCTGTTCAACGACCGGCTTCTTGT
GTCTGCGTTTCAACTTCCCATGGCGCACCGGTGGAGAGCTGGTGCTGATA
CCGCTGGAAGACCAAACGCATCACCGGTAGCAGCACCAGCAGTAGGCTTG
TGTTCGGGCCCCCGCGGTAGTCATCCCAGCAGTGCTGCTTGGCCTTCTGC
AGCAGACCGACCGCCGTTCTTCAACTCCATCTCTGCAGGTATGCGTAGCG
GCTCTCTGCCCCGCTCCGAGCACTGCTCCGCTCTCTCCGGGAGCAAGCTC
GCCAACGCCATCTTCCGCGGCAGCAGCAGCAGCAGCATCGGCAACGTGAG
CTATAGCAGCCAAGGAGCAATCGGCGCAATGCACAGCCTGGGGGAGGCGC
TCAAGCCGTTGCTGAGTTTTCTGTGTGTTGTGCTGAGATCTATGGCGCCG
TCTCCTCGCGAGGCGCAGATGATGGCCCGGCTCCTGGTGGCGGCGTTGTT
GGGTATGTTCATCGGCACGGAGCGAAGGACGAGCCACAGACCGGCGGGTG
TGCGCACTATGTCTCTCGTGGCGCTCGGGGCCTGCACCTTCACGCTGGTG
TCACAGTTCGGATTCGTCGGGAAGGCCGACCAGGCGCGTGTGGCGGCCAG
CGTGGCCTCGGGCGTCGGTTTCATCGGAGCCGGGGTGATAACCACGTCCG
GAAAGGAAGCCAGCGTCCGAGACAGCTTCAGCTTTCGCAGCAGAGGCAGC
GGCAGCGGCAGCGGCAGCGGCAGCGGCAGCAACGCGTACAATGACCTTGA
CGGTGAGGTGAGGGGCCTCACCACGGCCGGCGCCATCTGGATCACGGCGG
GGCTGGGGATGGCTTGCGGGGCCGGGCTTTTCTTCGTGGCCACCTTTGGG
GCTGTGCTAACGCTAGGCATCCTGAAAATCTCCGAAGTGATCTGCACAGT
GGGGACCCTGTGGGCTAGGGTGCGTTCGATTCTGAGGCCGGAGTTGGCTC
AAAGACTCGAAGAGGAAGCGAAAGCTCGAAAGGAAATGGCAGAACACACA
GAGAAGAGCGGCGCGACTCCTGCTGTGCGTAGCGGCGAAGCTCGCGAGAG
AGAGGAAAAGGAGAAGAAGGAGGAG
back to top